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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 688 fasta sequence
[CCGATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG-TTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG-AGTGTATGA--GTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGATCATTGTTGCACTACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCAGCGTGGAGAGATTCGGTCGTGATTGGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGTGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCT-GCCAC-GGTCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGG]
[+] EMBL BM643687 [CCGATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCGTTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTT ]
[+] EMBL BM616867 [ ccgGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG TTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG AGTGTATGA GTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGATCATTGTTGCACTACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCAGCGTGGAGAGATTCGGTCGTGATTGGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGTGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCT GCCAC GGTCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAA ]
[+] EMBL BM641223 [ ccgGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG TTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG AGTGTATGA GTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGATCATTGTTGCACTACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCAGCGTGGAGAGATTCGGTCGTGATTGGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGTGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTAGCCACGGGTCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGG]
consensusID : consensus_7268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence
[CCGGTTCGCACAAGTAGTGGCGCATATGCGTTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCG--GTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCG--GAGAGAGAGAGATCATTGTTGCAC-TACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCATCGTGGAGAGATTCGGTCGTGATTGGTGCCGCACATAAGAACGAACAACAGGCGCACAAGCGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGGTCGCCGCCGTCAGCAGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGGCGGCCCCGGCGGCGGCGCTCGCGATCGATCCGATCATCAACCACGTCGGGGACGGCATCTTCCTGCAGGCC]
[+] EMBL BM642666 [CCGGTTCGCACAAGTAGTGGCGCATATGCGTTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCG GTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCG GAGAGAGAGAGATCATTGTTGCAC TACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCATCGTGGAGAGATTCGGTCGTGATTGGTGCCGCACATAAGAACGAACAACAGGCGCACAAGCGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGGTCGCCGCCGTCAGCAGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGGCGGCCCCGGCGGCGGCGCTCGCGATCGATCCGATCATCAACCACGTCGGGGACGGCATCTTCCTGCAGGCC]
[+] EMBL BM620042 [ ccgTGCG TTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCGGTGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGAGATCATTGTTGCACATACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCATCGTGGAGAGATTCGGTCGTGATTGGTGCCGCACATAAGAACGAACAACAGGCGCACAAGCGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAAC ]
consensusID : consensus_7268#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[AAGAATCCCCCGAGGTTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCTAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCGTTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAGAGTGTATGAGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGANGAGAGAGAGATCATNTGTTGCACTACAGTACATTGTTGGCGACGAGTGGCTGGATATAGGGCTGGCAGTGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGACGCACNTCAGCGTGGAGAGATTCGGTCGTGACTCTGGTGTCGCACATAACAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGNTGGGTTTGCGTGTGCACGCANGCAGCAGCTAGCAGCACCGAGCGCCACGATGAGTACGGAACATACGGCAGCGAGTGAGCTGCTGGCCAATGGTACGTGCCACGGGTCGCCGCGNCAGCGGCAGCACGGC]
[+] EMBL AL693121 [AAGAATCCCCCGAGGTTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCTAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCGTTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAGAGTGTATGAGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGANGAGAGAGAGATCATNTGTTGCACTACAGTACATTGTTGGCGACGAGTGGCTGGATATAGGGCTGGCAGTGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGACGCACNTCAGCGTGGAGAGATTCGGTCGTGACTCTGGTGTCGCACATAACAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGNTGGGTTTGCGTGTGCACGCANGCAGCAGCTAGCAGCACCGAGCGCCACGATGAGTACGGAACATACGGCAGCGAGTGAGCTGCTGGCCAATGGTACGTGCCACGGGTCGCCGCGNCAGCGGCAGCACGGC]
consensusID : consensus_7268#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[CCGATTCGTGTTTCCATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAATGCTGCTCCGTGCGCTTCCGCAGCCAAAAGATTTGAACAAATTGGCCGGACAACGCATTCACAAAAAGAACTCAAACATCAACCGACTGCAGTAACCCATAATCAAACGAAAGGAATCAGGACAATCGGCCACCGTCCGTCTGCCTAGTGATGGTTGTTTTGACGTATAAATAATTAAATCTCCTGCGATTGCTCTTTGCACGTGCTGCACTACTACTTCT]
[+] EMBL BM598181 [CCGATTCGTGTTTCCATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAATGCTGCTCCGTGCGCTTCCGCAGCCAAAAGATTTGAACAAATTGGCCGGACAACGCATTCACAAAAAGAACTCAAACATCAACCGACTGCAGTAACCCATAATCAAACGAAAGGAATCAGGACAATCGGCCACCGTCCGTCTGCCTAGTGATGGTTGTTTTGACGTATAAATAATTAAATCTCCTGCGATTGCTCTTTGCACGTGCTGCACTACTACTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7268#1 ------------------------------------------------------------
consensus_7268#2 -----------------------AAGAATCCCCCGAGGTTTTGCACAATATTGAACGCTG 37
consensus_7268#0 ------------CCGATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTG 48
consensus_7268#3 CCGATTCGTGTTTCCATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAATGCTG 60
consensus_7268#1 ------------------------------CCGGTTCGCACAAGTAGTGGCGCATATGCG 30
consensus_7268#2 CTCCGTGCGCTTCCGCTAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG 97
consensus_7268#0 CTCCGTGCGCTTCCGC-AGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG 107
consensus_7268#3 CTCCGTGCGCTTCCGC-AGCCAAAAG-------ATTTGAACAAATTG-GCCGGACA-ACG 110
** * **** * * * * * * **
consensus_7268#1 TTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTG 90
consensus_7268#2 TTTTTT-CGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG-AGTGTATGAGT--AATTG 153
consensus_7268#0 TTTTTT-CGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG-AGTGTATGAGT--AATTG 163
consensus_7268#3 CATTCACAAAAAGAACTCAAACA----TCAACCGACTGCAGTAACCCATAA--------- 157
** ** **** ** * ** ** ***** * ** *
consensus_7268#1 TTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCGGTGTGTGTGGC-AGTG 149
consensus_7268#2 TTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAG-TGGCGGTGTGTGTGGC-AGTG 211
consensus_7268#0 TTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAG-TGGCGGTGTGTGTGGC-AGTG 221
consensus_7268#3 TCAA------------ACGAAAGGAATCAGGACAATCGGCCACCGTCCGTCTGCCTAGTG 205
* ** ** * * * *** * * * ** ** ** * ****
consensus_7268#1 AAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCAC 209
consensus_7268#2 AAAACTGTACGTGAAATTGTGAAAACTAC-TCCCCACGCACTTGCGCTGGTGGTACGCAC 270
consensus_7268#0 AAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCAC 281
consensus_7268#3 ATGGTTGT-TTTGACGTATAAATAATTAAATCTCC-TGCGATTGCTCT--TTGCACGTGC 261
* *** *** * * ** ** ** ** ** **** ** * * *** *
consensus_7268#1 GCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAG-AGAGAGAGATCATT-GTTGCACT 267
consensus_7268#2 GCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGANGAGAGAGAGATCATNTGTTGCACT 330
consensus_7268#0 GCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAG-AGAGAGAGATCATT-GTTGCACT 339
consensus_7268#3 TGCACTACTACTTCT--------------------------------------------- 276
** * *
consensus_7268#1 ACAGTACATTGTTGGCGA-GAGTGGCTGGATATAGGGCTGGCAG-GCGCCGGCACAGCTT 325
consensus_7268#2 ACAGTACATTGTTGGCGACGAGTGGCTGGATATAGGGCTGGCAGTGCGCCGGCACAGCTT 390
consensus_7268#0 ACAGTACATTGTTGGCGA-GAGTGGCTGGATATAGGGCTGGCAG-GCGCCGGCACAGCTT 397
consensus_7268#3 ------------------------------------------------------------
consensus_7268#1 CACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGA-GCACATCATCGTGGAGAGAT 384
consensus_7268#2 CACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGACGCACNTCAGCGTGGAGAGAT 450
consensus_7268#0 CACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGA-GCACATCAGCGTGGAGAGAT 456
consensus_7268#3 ------------------------------------------------------------
consensus_7268#1 TCGGTCGTGATT--GGTGCCGCACATAAGAACGAACAACAGGCGCACAAGC--------- 433
consensus_7268#2 TCGGTCGTGACTCTGGTGTCGCACATAACAACGAACAACAGGCGTACAAGCACACACATC 510
consensus_7268#0 TCGGTCGTGATT--GGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATC 514
consensus_7268#3 ------------------------------------------------------------
consensus_7268#1 --------------GGGTTTGCGTGTGCACGCAG-CAGCAG-TAGCAGCACCGAGCGCCA 477
consensus_7268#2 TCAGTAAGGCGGNTGGGTTTGCGTGTGCACGCANGCAGCAGCTAGCAGCACCGAGCGCCA 570
consensus_7268#0 TCAGTAAGGCGGT-GGGTTTGCGTGTGCACGCAG-CAGCAG-TAGCAGCACCGAGCGCCA 571
consensus_7268#3 ------------------------------------------------------------
consensus_7268#1 CGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGG 537
consensus_7268#2 CGATGAGTACGGAACATACGGCAGCGAGTGAGCTGCTGGCCAATGGTAC--GTGCCACGG 628
consensus_7268#0 CGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGG 631
consensus_7268#3 ------------------------------------------------------------
consensus_7268#1 -TCGCCGCCGTCAGCAGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGGCG 596
consensus_7268#2 GTCGCCGC-GNCAGCGGCAGCACGGC---------------------------------- 653
consensus_7268#0 -TCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGG-- 688
consensus_7268#3 ------------------------------------------------------------
consensus_7268#1 GCCCCGGCGGCGGCGCTCGCGATCGATCCGATCATCAACCACGTCGGGGACGGCATCTTC 656
consensus_7268#2 ------------------------------------------------------------
consensus_7268#0 ------------------------------------------------------------
consensus_7268#3 ------------------------------------------------------------
consensus_7268#1 CTGCAGGCC 665
consensus_7268#2 ---------
consensus_7268#0 ---------
consensus_7268#3 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||