These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence [TACAACATAAAGGGTTTGCCTGCCCAGGTTCTCGTCNCGGGCCGAGCTTGTATGNGTGGGGTCCCAGTAACCGGTGCCCTGGCACCATGACAGGGCTACAAGGCGTACGGNNCTTGTCTGTGCGGGGCGTGTGCAATCGGTGGGCANACGGGGGTNCAAACCTGGCTTCGTAGCATAGGATACGGCCCGATNACGCCTCATTCGGTGCTAAATCTCGTACCCGTACGTCTAATATCGGTAAGCTACACACTACGCACACGCGGTACAACTCAAGCCGTGGTTGATCCAATAAGCTCGTTGTTACACCTTCGTGTGTACAACATTNCTCGCACTACTAGCATAACAGCCGCCGGACGTACACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACCGGGACGACAACATAGTACAAGCGGCGCACGCCGAAGGAAATCTTCTCGCGCTGGTCCCGCCAGCTGTACGCACCGTCCAGCCCGGCCCGTTTGGCGCATAGACCTGGTTCCTGGTCGGCACCGGGCTGCTCGGGTTCGTCTGCATCGTGTACGTGATGGCCACGTATCAGCCGAGGGGTACGACCAGGGCGACCGGGAGCTCGGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTNACGGCGAGC--GGTAACTCGGCCAGC-GCCTCC-TTTAATCCGAAGGTGTAACCGTCGGATTAGCAAAACGAAAGAAAAAAACGAAACATTCTCTGCTCCCAAATGTGATGTATGTGTGCAAGCGTGTGTATGGATGTGTTTGACTGTGTGTGTGTGTGTGTGTGTGGGTACGCTCCGGTGAGAAAGAGAACGATATATGTTGGTGCGTGTGTGTGTATGTATAGAGAGATGGGAACGACAGCATGTCGAGTGGGCGGGCAGGAAAGGTTGAGCTGTATCACTATATATTAATATTTTAATTGTTTTCAATTATAAAAATACATTATCTATTAATAATTTCAGCT] [-] EMBL AL695798 [TACAACATAAAGGGTTTGCCTGCCCAGGTTCTCGTCNCGGGCCGAGCTTGTATGNGTGGGGTCCCAGTAACCGGTGCCCTGGCACCATGACAGGGCTACAAGGCGTACGGNNCTTGTCTGTGCGGGGCGTGTGCAATCGGTGGGCANACGGGGGTNCAAACCTGGCTTCGTAGCATAGGATACGGCCCGATNACGCCTCATTCGGTGCTAAATCTCGTACCCGTACGTCTAATATCGGTAAGCTACACACTACGCACACGCGGTACAACTCAAGCCGTGGTTGATCCAATAAGCTCGTTGTTACACCTTCGTGTGTACAACATTNCTCGCACTACTAGCATAACAGCCGCCGGACGTACACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACCGGGACGACAACATAGTACAAGCGGCGCACGCCGAAGGAAATCTTCTCGCGCTGGTCCCGCCAGCTGTACGCACCGTCCAGCCCGGCCCGTTTGGCGCATAGACCTGGTTCCTGGTCGGCACCGGGCTGCTCGGGTTCGTCTGCATCGTGTACGTGATGGCCACGTATCAGCCGAGGGGTACGACCAGGGCGACCGGGAGCTCGGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTNACGGCGAGC GGTAACTCGGCCAGC GCCTCC TTTAATCC ] [+] EMBL BM644900 [ ccgCTGCATCGTGTACGTGATGGCCACG ATCAGCCGAGGGG ACGACCAGGGCGACCGGGAGCTCGGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTGACGGCGAGCGGGGTAACTCGGCCAGCGGCCTCCTTTTGAT TGAAGGTGTAACCGTCGGATTAGCAAAACGAAAGAAAAAAACGAAACATTCTCTGCTCCCAAATGTGATGTATGTGTGCAAGCGTGTGTATGGATGTGTTTGACTGTGTGTGTGTGTGTGTGTGTGGGTACGCTCCGGTGAGAAAGAGAACGATATATGTTGGTGCGTGTGTGTGTATGTATAGAGAGATGGGAACGACAGCATGTCGAGTGGGCGGGCAGGAAAGGTTGAGCTGTATCACTATATATTAATATTTTAATTGTTTTCAATTATAAAAATACATTATCTATTAATAATTTCAGCT] consensusID : consensus_7269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 876 fasta sequence [CCGAGAAACTGAACGAGACGTGGCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT-GACGACG-CAGTTCTGCTTCGAGCATCGGG-TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGCAACCTGGCTTCGAGCAAGGAACGGCCCGAAACGCCTCATTCGGTGCTAAATCTCGACCCGTACGTCAATATCGCAAACAGCCGCCGGACGACACTGCTCGCCCNGGAGNCACCGATCGGTGGGTCCGACCGGGGACGACAACAAGTACAAGCGGCGCACGCCGAANGAAATCTTCTCGCGCTGGTC] [+] EMBL BM613928 [CCGAGAAACTGAACGAGACGTGGCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCTGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCGTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAAAACGGTGCCGGCACCATGACAGGCT ] [+] EMBL BM580969 [ ccgGGCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAGCAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTGTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAAAACGGTGCCGGCA ] [+] EMBL BX621692 [ GCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGCAACCTGGCTTCGAGCAAGGAACGGCCCGAAACGCCTCATTCGGTGCTAAATCTCGACCCGTACGTCAATATCGCAAACAGCCGCCGGACGACACTGCTCGCCCNGGAGNCACCGATCGGTGGGTCCGACCGGGGACGACAACAAGTACAAGCGGCGCACGCCGAANGAAATCTTCTCGCGCTGGTC] [+] EMBL BX622518 [ GCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCT ] [+] EMBL AL696906 [ GCAGATCGCNGAGGTCA TTCTGCTTCGAGCATCGGGCTGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTG CCGCGAACACGG ACCCGG GG CATACCTG CCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGG TACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGCAACCTGGCTTCGAGCAAGGAACGGCCCGAAACGCCTCATTCGGTGCTAAATCTCGACCCGTACGTCAATATCGCAAACAG CGCCGGACGACACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACC GGGACGACAACAAGTACAAGCGG GCACGCCGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7269#0 TACAACATAAAGGGTTTGCCTGCCCAGGTTCTCGTCNCGGGCCGAGCTTGTATGNGTGGG 60 consensus_7269#1 ------------------------------------CCGAG---AAACTGAACGAGACGT 21 ** * * ** * * * * consensus_7269#0 GTCCCAGTAACCGGTGCCCTGGCACCATGACAGGGCTACAAGGCGTACGGNNCTTGTCTG 120 consensus_7269#1 GGCCGATACACTGCCG--ATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAG--TGCATT 77 * ** * ** * * * *** * * * * * *** * * ** * consensus_7269#0 TGCGGGGCGTGTGCAATCGGTGGGCANACGGGGGTNCAAACCTGGCTTCGTAGCATAGGA 180 consensus_7269#1 TGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGA-ACACACAAACCAGCGAAGGCGATGG 136 *** ** * *** *** *** * * * ** ** * ** ** * * consensus_7269#0 TACGGCCCGATNACGCCTCATTCGGTGCTAAATCTCGTACCCGTACGTCTAATATCGGTA 240 consensus_7269#1 GTCTGTGCA--AGTGTCCCAAGCGGCAGGTGACGACGCAGTTCTGCTTCGAGCATCGG-- 192 * * * * * ** *** * ** * * * ** * ***** consensus_7269#0 AGCTACACACTACGCACACGCGGTACAACT-CAAGCCGTGGTTGATCCAATAAGCTCGTT 299 consensus_7269#1 --GTGAACGTT-TGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCAC--AGTGCAGT 247 * ** * ** * * *** * ** * ** ** * * consensus_7269#0 GTTACACCTTCGTGTGTACAACATTNCTCGCACTACTAGCATAACAGCCGCCGGACGTAC 359 consensus_7269#1 CATACATCCA-GTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCG----- 301 **** * *** * * ** * * *** * ** ** * consensus_7269#0 ACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACCGGGACGACAACATAGTACAAGC 419 consensus_7269#1 GCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTG--TTACCATGTCTTTCACTG 359 * * * * * *** ** * *** * * * * * ** * * * ** consensus_7269#0 GGCGCACGCCGAAGGAAATCTTCTCGCGCTGGTCCCGCCAGCTGTACGCACCGTCCAGCC 479 consensus_7269#1 GAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATAC 419 * * * * * * * **** * ** * * ** * ** *** * consensus_7269#0 CGGCCCGTTTGGCGCATAGACCTGGTTCCTGGTCGGCACCGGGCTGCTCGGGTTCGTCTG 539 consensus_7269#1 CTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCA-------ATCTGGTGTCGCCGG 472 * ***** * ** ** ** *** * * * *** ** *** * * consensus_7269#0 CATCGTGTACGTGATGGCCACGTATCAGCCGAGGGGTACGACCAGGGCGACCGGGAGCTC 599 consensus_7269#1 --TCGCGGACGTGCTG----CGTGTCCGGCTCGGG-------CAGGTGAACTGGGGCCGG 519 *** * ***** ** *** ** * * *** **** ** *** * consensus_7269#0 GGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTNACGGCGAGCGGTAACT 659 consensus_7269#1 AACGAGCTAG-GCTTACCGTTGATTT------TGGATGAGAAGCACGAC-ACCGCCGGCT 571 ** * * ** * * * * * * *** *** * * ** ** consensus_7269#0 CGGCCAGCGCCTCCTTTAATCCGAAGGTGTAACCGTCGGATTAGCAAAACGAAAGAAAAA 719 consensus_7269#1 ACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGT-GCCGGC 630 * * * **** * * * * * * * ** ** **** * consensus_7269#0 AACGAAACATTCT-CTGCTCCCAAATGTGATGTATGTGTGCAAGCGTGTGTA-TGGATGT 777 consensus_7269#1 ACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGC 690 * * *** ** * ** * ** * * ****** ** * * * ** * consensus_7269#0 G-TTTGACTGTGTGTGTGTGTGTGTGTGTGGGTACGCTCCGGTGAGAAAGAGAACGATAT 836 consensus_7269#1 AACCTGGCTTCGAGCAAG---GAACGGCCCGAAACGCCTCATTCGG--------TGCTAA 739 ** ** * * * * * * **** * * * * ** consensus_7269#0 ATGTTGGTGCGTGTGTGTGTATGTATAGAGAGATGG-GAACGACAGCATGTCGAGTGGGC 895 consensus_7269#1 ATCTCGACCCGTACGTCAATAT-CGCAAACAGCCGCCGGACGACACTGC-TCGCCCNGG- 796 ** * * *** ** *** * * ** * * ****** *** ** consensus_7269#0 GGGCAGGAAAGGTTGAGCTGTATCACTATATATTAATATTTTAATTGTTTTCAATTATAA 955 consensus_7269#1 AGNCACCGATCGGTGGGTCCGACCGGGGACGACAACAAGTACAAGCGGCGCACGCCGAAN 856 * ** * * ** * * * * * * * ** * * consensus_7269#0 AAATACATTATCTATTAATAATTTCAGCT 984 consensus_7269#1 GAAATCTTCTCGCGCTGGTC--------- 876 ** * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||