cluster # 7271

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Anopheles gambiae
cluster # 7271 cluster # 7271 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7271#0 length = 760 sequences # 6

consensus_7271#1 length = 324 sequences # 1

consensusID : consensus_7271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 760
fasta sequence

                              [GAATTCCTCGAGAACTGTTGGCCTACTGGGTAAACAAACTTTCCTGGCGTGAAA-AAAGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAAAATATTTGCACAATACTAGCGTTTTTACCAATTAAAACACTTACCGAGAGCG-GCAAACAGCGAAACAAACACACGACAAAAGGGTTCAGTGTAGGACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTACGACGATGATGCCGAAGTGAATAACCTGGAAACGGAACATACGGAATGGCTAAACCGAATCACCTTAATCGGACAGGAACTGACGCCAATTGGCAAAAGTTCCAACGAGCAGCACATGGAAAACATGGACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAACTCGGACGACGACGATGACGATATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACCGTCGTTACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTCGCACGATTTACAATGTCCTGGCCACTCCCTTTACTGCGTGTCATTATATTAAGCTTGAGTTGCGTTACCTTATCGGTACTGGTACATTGTAAAAACTTACTTTAAAATAGATCATACGGCCAGTTCAATTCAAAAAAAAAAAAAAAGGCCACATGTCCCCCCCCTG]

[-] EMBL CNS08QMN             [GAATTCCTCGAGAACTGTTGGCCTACTGGGTAAACAAACTTTCCTGGCGTGAAACAAAGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAAAATATTTGCACAAAACTAGCGTTTTTACCAATTAAAACACTTACCGAGAGCG GCAAACAGCGAAACAAACACACGACAAAAGGGTTCAGTGTAGAACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTACGACGATGATGCCGAAGTGAATAACCTGGAAACGGCACATACGGAATGGCTAAACCGAATCACCTTAATCGGACAGGAACTGACGCCAATTGGCAAAAGTTCCAACGAGCAGGACATGGAAAACATGGACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAACTCGGACGACGACGATGACGATATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACCGTCGTTACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTCGCACGATTTACAATGTCCTGGCCACTCCCTTTACCGCGTGTCATTATATTAAGCTTGAGTTGCGTTACCTTATCGGTACTGGTACATTGTAAAAACT                                                                     ]
[+] EMBL CNS09182             [                     CCTACTGGGTAAACAAACTTGCCTGGCGTGAAA AAAGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAAAATATTTGCACAATACTAGCGTTTTTACCAATTAAAACACTTACCGAGAGCG GCAAACAGCGAAACAAACACACGACAAAAGGGTTCAGTGTAGGACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTACGACGATGATGCCGAAGTGAATAACCTGGAAACGGAACATACGGAATGGCTAAACCGAATCACCTTAATCGGACAGGAACTGACGCCAATTGGCAAAAGTTCCAACGAGCAGCACATGGAAAACATGGACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAACTCGGACGACGACGATGACGATATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACCGTCGTTACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTCGCACGATTTACAATGTCCTGGCCACTCCCTTTACTGCGTGTCATTATATTAAGCTTGAGTTGCGTTACCTTATCGGTACTGG                                                                                    ]
[+] EMBL CNS08QMM             [                                                             TCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAAAATATTTGCACAATACTAGCGTTTTTACCAATTAAAACACTTACCGAGAGCG GCAAACAGCGAAACAAACACACGACAAAAGGGTTCAGTGTAGGACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTACGACGATGATGCCGAAGTGAATAACCTGGAAACGGAACATACGGAATGGCTAAACCGAATCACCTTAATCGGACAGGAACTGACGCCAATTGGCAAAAGTTCCAACGAGCAGCACATGGAAAACATGGACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAACTCGGACGACGACGATGACGATATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACCGTCGTTACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTCGCACGATTTACAATGTCCTGGCCACTCCCTTTACCGCGTGTCATTATATTAAGCTTGAGTTGCGTTACCTTATCGGTACTGGTACATTGTAAAAACTTACTTTAAAATAGATCATACGGCCAGTTCAATTCAAAAAAAAAAAAAAAGGCCACATGTCCCCCCCCTG]
[+] EMBL BM624838             [                                                                                                                    AGCGTATTTACCGATTACAACACTTACCGAGAGCG GCAAACAGCGAAACAAACACACGACAAAAGGGTTCAGTGTACGACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTACGACGATGATGCCGAAGTGAATAACCTGGAAACGGAACACACGGAATGGCTAAACCGAATCACCTTAATCGGACAGGAACTGACGCCAATTGGCAAAAGCTCCAACGAGCAGCACATGGAAAACATGGACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAATTCGGACGACGACGATGACGACATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACCGTCGTTACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTCGCACGATTTACAATGTCCTGGCCACTTCCTCTGCTGCGTATCATTATATTAAGCCTGAGTTGGGTTAagtt                                                                                               ]
[-] EMBL CNS09183             [                                                                                                                         TTTTACCAATTAAAACACTTACCGAGAGCG GCAAACAGCGAAACAAACACACGACAAAAGGGTTCAGTGTAGGACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTACGACGATGATGCCGAAGTGAATAACCTGGAAACGGAACATACGGAATGGCTAAACCGAATCACCTTAATCGGACAGGAACTGACGCCAATTGGCAAAAGTTCCAACGAGCAGCACATGGAAAACATGGACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAACTCGGACGACGACGATGACGATATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACCGTCGTTACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTCGCACGATTTACAATGTCCTGGCCACTCCCTTTACTGCGTGTCATTATATTAAGCTTGAGTTGCGTTACCTTATCGGTACTGGTACATTGTAAAAACTTACTTTAAAATAGATCATACGGCCAGTTCAATTCAAAAAAAAAAAAAAAag                  ]
[+] EMBL CNS08XNK             [                                                                                                                            TACCAATTAAAACACTTACCGAGAGCGCGCAAACAGCGAAACAAACACACGACAAAAGGGTTCAGTGTAGGACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_7271#0
GAATTCCTCGAGAACTGTTGGCCTACTGGGTAAACAAACTTTCCTGGCGTGAAAAAAGCT
TCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAAAATATTTGCACAATACTAGCGT
TTTTACCAATTAAAACACTTACCGAGAGCGGCAAACAGCGAAACAAACACACGACAAAAG
GGTTCAGTGTAGGACTGTCGATAAAGGTTTGATACTTCCACAATGATACCGTTCTACCCT
TCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTACGACGAT
GATGCCGAAGTGAATAACCTGGAAACGGAACATACGGAATGGCTAAACCGAATCACCTTA
ATCGGACAGGAACTGACGCCAATTGGCAAAAGTTCCAACGAGCAGCACATGGAAAACATG
GACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAACTCGGACGACGAC
GATGACGATATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACCGTCGTT
ACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTCGCACGA
TTTACAATGTCCTGGCCACTCCCTTTACTGCGTGTCATTATATTAAGCTTGAGTTGCGTT
ACCTTATCGGTACTGGTACATTGTAAAAACTTACTTTAAAATAGATCATACGGCCAGTTC
AATTCAAAAAAAAAAAAAAAGGCCACATGTCCCCCCCCTG

consensusID : consensus_7271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [CAGAATCGCACGCAGGTGTNATGCTAATTTTGTTGGTGTTAATCATTATTTGAATTCAAATCAACATCGTAATAAGGAACTTGTACGGAAACGTAAACAAACTTGCCTGGCGTGAAACAAAGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAATATATTTGCACAATACAAGCGTTTTTACCAACTTAAAACACTTACCGAGAGCGGCAAACAGCGAAATAAACACACGACGAAAGGGTCAGTGTACGACTGTCGATAACAGGTTTGATACTTCCACAATGATTCCGTTCTAACCTTCGCTGNAACGTCTGCGGC]

[+] EMBL AL696984             [CAGAATCGCACGCAGGTGTNATGCTAATTTTGTTGGTGTTAATCATTATTTGAATTCAAATCAACATCGTAATAAGGAACTTGTACGGAAACGTAAACAAACTTGCCTGGCGTGAAACAAAGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAATATATTTGCACAATACAAGCGTTTTTACCAACTTAAAACACTTACCGAGAGCGGCAAACAGCGAAATAAACACACGACGAAAGGGTCAGTGTACGACTGTCGATAACAGGTTTGATACTTCCACAATGATTCCGTTCTAACCTTCGCTGNAACGTCTGCGGC]




>consensus_7271#1
CAGAATCGCACGCAGGTGTNATGCTAATTTTGTTGGTGTTAATCATTATTTGAATTCAAA
TCAACATCGTAATAAGGAACTTGTACGGAAACGTAAACAAACTTGCCTGGCGTGAAACAA
AGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAATATATTTGCACAATACAA
GCGTTTTTACCAACTTAAAACACTTACCGAGAGCGGCAAACAGCGAAATAAACACACGAC
GAAAGGGTCAGTGTACGACTGTCGATAACAGGTTTGATACTTCCACAATGATTCCGTTCT
AACCTTCGCTGNAACGTCTGCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7271#0      ------------------------------------------------------------
consensus_7271#1      CAGAATCGCACGCAGGTGTNATGCTAATTTTGTTGGTGTTAATCATTATTTGAATTCAAA 60
                                                                                  

consensus_7271#0      -GAATTCCTCGAGAACTG--TTGGCCTACTGGGTAAACAAACTTTCCTGGCGTGAAA-AA 56
consensus_7271#1      TCAACATCGTAATAAGGAACTTGTACGGAAACGTAAACAAACTTGCCTGGCGTGAAACAA 120
                        **   *   * **     ***  *      ************ ************ **

consensus_7271#0      AGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAAAATATTTGCACAATACTA 116
consensus_7271#1      AGCTTCCCACCGCTTTGGTCGGCATTTTCATGCTGATCCGAATATATTTGCACAATACAA 180
                      ****************************************** *************** *

consensus_7271#0      GCGTTTTTACCAA-TTAAAACACTTACCGAGAGCGGCAAACAGCGAAACAAACACACGAC 175
consensus_7271#1      GCGTTTTTACCAACTTAAAACACTTACCGAGAGCGGCAAACAGCGAAATAAACACACGAC 240
                      ************* ********************************** ***********

consensus_7271#0      AAAAGGGTTCAGTGTAGGACTGTCGATAA-AGGTTTGATACTTCCACAATGATACCGTTC 234
consensus_7271#1      GAAAGGGT-CAGTGTACGACTGTCGATAACAGGTTTGATACTTCCACAATGATTCCGTTC 299
                       ******* ******* ************ *********************** ******

consensus_7271#0      TACCCTTCGCTGCAACCGTCTGCGGCGTACAACTTTTGGTTTTCCGTTGATGAGTCGTAC 294
consensus_7271#1      TAACCTTCGCTGNAAC-GTCTGCGGC---------------------------------- 324
                      ** ********* *** *********                                  

consensus_7271#0      GACGATGATGCCGAAGTGAATAACCTGGAAACGGAACATACGGAATGGCTAAACCGAATC 354
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      ACCTTAATCGGACAGGAACTGACGCCAATTGGCAAAAGTTCCAACGAGCAGCACATGGAA 414
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      AACATGGACACGGAGGATGAGGATGCGAACGACGAAAGCGATGATTCGGACAACTCGGAC 474
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      GACGACGATGACGATATGGATGATATGAACAATACGCGGAACCTGCCGGATGAAATTACC 534
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      GTCGTTACCGGTGGATACATGGGGGATGACACGCACGCAGACACGCTGTAGAAAGGAGTC 594
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      GCACGATTTACAATGTCCTGGCCACTCCCTTTACTGCGTGTCATTATATTAAGCTTGAGT 654
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      TGCGTTACCTTATCGGTACTGGTACATTGTAAAAACTTACTTTAAAATAGATCATACGGC 714
consensus_7271#1      ------------------------------------------------------------
                                                                                  

consensus_7271#0      CAGTTCAATTCAAAAAAAAAAAAAAAGGCCACATGTCCCCCCCCTG 760
consensus_7271#1      ----------------------------------------------