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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1278 fasta sequence
[CCGATCGGCGCCCAAAAATTTTCACGTTTGTATCTGTAGCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCCCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAGCATGCTCAACTACTACTCTACGCTGAACACGTTTGAAAAGGCTGCCGCATTCGAGACGCGCTTCGTCAATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTTCAAGTTATGCGACGTGTTAACCAGACGCTGATCCGCATCAAAAACCTGGACCTGGTGCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGATCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCGACGCAAACGGTGCAACATCTAGCAATTGTGCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGCACAGCACGACGGATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCAACAAGAGTGTGGAGGAAGCGCTCACGGC-GCCATCGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACC-AATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAA-CCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGGGCACGTGAGTGAATCGTGCATCGC-TTCAATAAAGCAGAAACT]
[+] EMBL BM621641 [CCGATCGGCGCCCAAAAATTTTCACGTTTGTATCTGTAGCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCCCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAGCATGCTCAACTACTACTCTACGCTGAACACGTTTGAAAAGGCTGCCGCATTCGAGACGCGCTTCGTCAATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTTCAAGTTATGCGACGTGTTAACCAGACGCTCATCCGCATCAAAAACCTGGACCTGGTGCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGATCCAACCTCGAGTATCTGCTGGTCAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCGGTATGCAGACGAA ]
[+] EMBL BX617604 [ TCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAACTACTACTCTACGCTGAACTCGTTTGAAAAGGCTGCCGCATTCGAGACGCGCTTTGTCAATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTTCAAGTTATGCGACGTGTTAACCAGACGCTGATCCGCATCAAAAACCTGGACCTGGTTCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATTCCGCAGACCGTGAACTTGCCAGTACGATCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTTTCCCGCTCGGTATGCAGAAGGACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTACGAGC ]
[+] EMBL CNS08SKG [ GTTAA CAGACGCTGATCCGCATCAAAAACCTGGACCTGGTGCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGCTCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGCCAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCGACGCAAACGGTGCAACATCTAGCAATTGTGCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGCACAGCACGACGGATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCAACAAGAGTGTGGAGGAAGCGCTCACGGC GCCATCGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACC AATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAA CCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGGG ]
[+] EMBL CNS08YVZ [ TTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGCTCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGC ]
[-] EMBL CNS08SKH [ GCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCCACGTACGTGATGTTTCTCGGCTTAATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCCACGCAAACGGTGCCACATCTAGCAATTG GCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGCACAGCACGACGGATGGGGGAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCCACAAGAGTGTGGAGGAAG GCTCACGGCAGCCAACGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACCGAATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAACCCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGGGGGCACGTGAGTGAATCGTGCATCGCTTTCAATAAAGCAGAA ]
[-] EMBL CNS08YW0 [ GATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCAACAAGAGTGTGGAGGAAGCGCTCACGGC GCCATCGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACC AATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAA CCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGGGCACGTGAGTGAATCGTGCATCGC TTCAATAAAGCAGAAACT]
consensusID : consensus_7274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[CGNGGGTTACGGCGCTCCAATTATTTTCACGTTTGTATCTTGTATCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAACTACTACTCTACGCTGAACTCGTTTTGAAAAGGCTGCGCATTCGAGACGCGCTTTTGTCATCGCTTCAAGTTCCCGTGCGTAATATGCACGGCTTTTCAAGTTATCGCGACGTAGTTAACCAGACGCTTGATCCGACATCAAGAAAGCTTGGANCTGGTTTCAGGTTCATTATGGACTTATGCAACACGGCTTTCCTTGCCCCGAGTCGGGAAATTACAATTTGCCCGACATGTGAGCCCGGTTGAAACTTNGGCGCAGTTAACGGACTCCAACCGTTGGGAAGATAATCTTGGCGTTAGGGTTGANAGAAATTGCACAGGGATTAG]
[+] EMBL AL697421 [CGNGGGTTACGGCGCTCCAATTATTTTCACGTTTGTATCTTGTATCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAACTACTACTCTACGCTGAACTCGTTTTGAAAAGGCTGCGCATTCGAGACGCGCTTTTGTCATCGCTTCAAGTTCCCGTGCGTAATATGCACGGCTTTTCAAGTTATCGCGACGTAGTTAACCAGACGCTTGATCCGACATCAAGAAAGCTTGGANCTGGTTTCAGGTTCATTATGGACTTATGCAACACGGCTTTCCTTGCCCCGAGTCGGGAAATTACAATTTGCCCGACATGTGAGCCCGGTTGAAACTTNGGCGCAGTTAACGGACTCCAACCGTTGGGAAGATAATCTTGGCGTTAGGGTTGANAGAAATTGCACAGGGATTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7274#0 --CCGAT--CGGCGC-CCAAAAATTTTCACGTTTGTATCT-GTAGCGGTTCTCCCAAGAA 54
consensus_7274#1 CGNGGGTTACGGCGCTCCAATTATTTTCACGTTTGTATCTTGTATCGGTTCTCCCAAGAA 60
* * ****** **** ****************** *** ***************
consensus_7274#0 AATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCCCCGTGTAA 114
consensus_7274#1 AATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAA 120
*************************************************** ********
consensus_7274#0 ATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAGCATGCTCAA 174
consensus_7274#1 ATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAA 180
************************************************** *********
consensus_7274#0 CTACTACTCTACGCTGAACACGTTT-GAAAAGGCTGCCGCATTCGAGACGCGCTTCGTCA 233
consensus_7274#1 CTACTACTCTACGCTGAACTCGTTTTGAAAAGGCTGC-GCATTCGAGACGCGCTTTTGTC 239
******************* ***** *********** *****************
consensus_7274#0 ATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTT-CAAGTTAT-GCGACGT-GTTA 290
consensus_7274#1 ATCGCTTCAAGTTCC-CGTGCGTAATATGCACGGCTTTTCAAGTTATCGCGACGTAGTTA 298
*************** ******************** ******** ******* ****
consensus_7274#0 ACCAGACGCT-GATCCG-CATCAAAAA--CCTGGACCTGGTG-CAGGTT-ATTATGGATT 344
consensus_7274#1 ACCAGACGCTTGATCCGACATCAAGAAAGCTTGGANCTGGTTTCAGGTTCATTATGGACT 358
********** ****** ****** ** * **** ***** ****** ******** *
consensus_7274#0 TGCACAGC-------TTCCTGCCC-GAGTCGGAATACATCCCGCAGACGGTGAACTTGCC 396
consensus_7274#1 TATGCAACACGGCTTTCCTTGCCCCGAGTCGGGAAATTAC---AATTTGCCCGACATGTG 415
* ** * * * ***** ******* * * * * * ** **
consensus_7274#0 GGTACGATCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGAT 456
consensus_7274#1 AGCCCGGTTGAAACTTNGGCG-CAGTTAACG-GACTCCAACCGTTGGG-AAGATAAT--- 469
* ** * ** ** * * * * ** * *** *** * *** * *
consensus_7274#0 GCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACAT 516
consensus_7274#1 -CTTGGCGTTAGGGTTGANAGAAATTGCACAGGGATTAG--------------------- 507
* ** *** ** * * * ** * *
consensus_7274#0 GCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTC 576
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 CCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGAT 636
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 TCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGC 696
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 GGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCGACGCAAACGGTGC 756
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 AACATCTAGCAATTGTGCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGC 816
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 ACAGCACGACGGATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCA 876
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 ACAAGAGTGTGGAGGAAGCGCTCACGGCGCCATCGTTCAGTTCCGTACCGAAAGCGATGC 936
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 TACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCAC 996
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 CTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGC 1056
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 AGTTCCTGAAGCAGGAGCGAACCAATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAG 1116
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 GGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAACCGAC 1176
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 TTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGG 1236
consensus_7274#1 ------------------------------------------------------------
consensus_7274#0 GCACGTGAGTGAATCGTGCATCGCTTCAATAAAGCAGAAACT 1278
consensus_7274#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||