These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCGAGAACGAGCCAAAAACGGCGGCCCCCGGCTGTGCGGTAATGAGCAATAATCTCTGACAGATTTGTGTGTGTTTTCGCGTTGTGTGAAGGGGAGAGAGAAGGAAAAGGAGAATGTGGTGGGTGAGGTGTTCAAATGCAACTTGTTTGCATTGGCTCGACCGCCCCAGCCGCAGCAAAATTACACGCTACACCGAGTGCAAAGTGTAAATAAATACGGCACACGGGGCAGGGCAAGAGTGTAGTTCCGGCCTGCTTCTTCTTCTTCTTCTTCTTCTTTTATCTTCTATCAACGTGCTCAAGTGTGTCTGTGTCTGTGTCTAGCTGGTGTCCTTGAAGCAGGAAGACGGACCCCAAAAAGCCAAACCGGGAATGAGTAAACAACAAAAGCCTACTGCGAGACAAACAAAAAATCATGCGGGCATACTGAACTGTCAACCGGTTGAGAGCACACTCCAGCCAATCCTTTGTTTACATCCGTGTCATCCTCCCAAATGAAGAAGGCAAAAAGAAACTTCATTAATTAATAACCCTTTTCTTTCTTTTCCTTTTCCTTTTGTTGCAGAAATGATTGTAACCTTCTTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGACGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTTCTCGCTC] [+] EMBL BM638129 [CCGCGAGAACGAGCCAAAAACGGCGGCCCCCGGCTGTGCGGTAATGAGCAATAATCTCTGACAGATTTGTGTGTGTTTTCGCGTTGTGTGAAGGGGAGAGAGAAGGAAAAGGAGAATGTGGTGGGTGAGGTGTTCAAATGCAACTTGTTTGCATTGGCTCGACCGCCCCAGCCGCAGCAAAATTACACGCTACACCGAGTGCAAAGTGTAAATAAATACGGCACACGGGGCAGGGCAAGAGTGTAGTTCCGGCCTGCTTCTTCTTCTTCTTCTTCTTCTTTTATCTTCTATCAACGTGCTCAAGTGTGTCTGTGTCTGTGTCTAGCTGGTGTCCTTGAAGCAGGAAGACGGACCCCAAAAAGCCAAACCGGGAATGAGTAAACAACAAAAGCCTACTGCGAGACAAACAAAAAATCATGCGGGCATACTGAACTGTCAACCGGTTGAGAGCACACTCCAGCCAATCCTTTGTTTACATCCGTGTCATCCTCCCAAATGAAGAAGGCAAAAAGAAACTTCATTAATTAATAACCCTTTTCTTTCTTTTCCTTTTCCTTTTGTTGCAGAAATGATTGTAACCTTCTTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGACGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTTCTCGCTC] consensusID : consensus_728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGCGCGTCGAACGAGGCGGATGTGTGCGCACTCTCCGGTAGTTGGTGTGGGAAACGCGCCACAAAAACATTTTTCGAGTACGTCTGATGATTGAAAGCTCGTAGGTGTTTTTTCGGCAGTTTAGGTCGCGGGCAGTACACATACACACATTTAGTACACAAATATACAATTCATATACGGTCCTTCACAACCTCTGCGCGCTCCCCCCCCCCCGCTCACAAACCCACATGCATACGAGATTAGGTTCGCGGCTAGACGACGACACAGTGCAAGCAAGGATTAGTGGTGGTGGTGGTGGTGGTGGTGGCCGTGGTTGCGGGAAAAGTGCCAGCGGTGTTAGGGGGAGTGACGGAGGCGGCAAAGGATTAACTCGTTCGTGGCAACAAGAGCGATGTCGTTGCTGCCGGTCGCGTGTTTGTTTATAAAAGGAAATGATTGTAACCTTCTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGCGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTCTCGCTCGGTTCCAATCCAACACACACACACCCAGGTTCCGGCCGGACGGATCGGGGGGAGGGAAAGGAAACCACAAAGAAAGGTAGAAAAAGAGTAAACCAGCAGCAGACAATCAA] [+] EMBL BM618938 [CCGCGCGTCGAACGAGGCGGATGTGTGCGCACTCTCCGGTAGTTGGTGTGGGAAACGCGCCACAAAAACATTTTTCGAGTACGTCTGATGATTGAAAGCTCGTAGGTGTTTTTTCGGCAGTTTAGGTCGCGGGCAGTACACATACACACATTTAGTACACAAATATACAATTCATATACGGTCCTTCACAACCTCTGCGCGCTCCCCCCCCCCCGCTCACAAACCCACATGCATACGAGATTAGGTTCGCGGCTAGACGACGACACAGTGCAAGCAAGGATTAGTGGTGGTGGTGGTGGTGGTGGTGGCCGTGGTTGCGGGAAAAGTGCCAGCGGTGTTAGGGGGAGTGACGGAGGCGGCAAAGGATTAACTCGTTCGTGGCAACAAGAGCGATGTCGTTGCTGCCGGTCGCGTGTTTGTTTATAAAAGGAAATGATTGTAACCTTCTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGCGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTCTCGCTCGGTTCCAATCCAACACACACACACCCAGGTTCCGGCCGGACGGATCGGGGGGAGGGAAAGGAAACCACAAAGAAAGGTAGAAAAAGAGTAAACCAGCAGCAGACAATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_728#0 CCGCGAGAACGAGCCAAAAACGGCGGCCCCCGGCTGTGCGGTAATGAGCAATAATCTCTG 60 consensus_728#1 -------------------------------------------CCGCGCGTCGAACGA-G 16 * ** * * * consensus_728#0 ACAGATTTGTGTGTGTTTTCGCGTTGT--GTGAAGGGGAGAGAGAAGGAAAAGGAGAATG 118 consensus_728#1 GCGGATGTGTGCGCACTCTCCGGTAGTTGGTGTGGGAAACGCGCCACAAAAACATTTTTC 76 * *** **** * * ** ** ** *** ** * * **** * consensus_728#0 TGGTGGGTGAGGTGTTCAAATGCAACTTGTTTGCATTGGCTCGACCGCCCCAGCCGCAGC 178 consensus_728#1 GAGTACGTCTGATGATTGAA---AGCTCGTAGGTGTTTTTTCGGCAGTTTAGGTCGCGG- 132 ** ** * ** * ** * ** ** * ** *** * * * *** * consensus_728#0 AAAATTACACGCTACACCGAGTGCAAAGTGTAAATAAATACGGCACACGGGGCAGGGCAA 238 consensus_728#1 -GCAGTACACA-TACACACATTT---AGTACACAAATATACAATTCATA----------- 176 * ***** ***** * * *** * * * **** ** consensus_728#0 GAGTGTAGTTCCGGCCTGCTTCTTCTTCTTCTTCTTCTTCTTTTATCTTCTATCAACGTG 298 consensus_728#1 ---TACGGTCCTTCACAACCTCTGCGCGCTCCCCCCCCCCCGCT--CACAAACCCACATG 231 * ** * * * *** * ** * * * * * * * ** ** consensus_728#0 CTCAAGTGTGTCTGTGTCTGTGTCTAGCTGGTGTCCTTGAAGCAGGAAGACGGACCCCAA 358 consensus_728#1 --CATACGAGATTAGGTTCGCGGCTAGACGACGACAC---AGTGCAAGCAAGGATTAGTG 286 ** * * * ** * * **** * * * ** * * *** consensus_728#0 AAAGCCAAACCGGGAATGAGTAAACAACAAAAGCCTACTGCGAGACAAACAAAAAATCAT 418 consensus_728#1 GTGGTGGTGGTGGTGGTG-GTGGCCG--------TGGTTGCGGGA-----AAAGTGCCA- 331 * ** ** ** * **** ** *** ** consensus_728#0 GCGGGCATACTGAACTGTCAACCGGTTGAGAGCACACTCCAGCCAATCCTTTGTTTACAT 478 consensus_728#1 GCGGTGTTAGGGGG------AGTGACGGAGG--------CGGCAAAGGATTAACT--CGT 375 **** ** * * * *** * ** ** ** * * * consensus_728#0 CCGTGTCATCCTCCCAAATGAAGAAGGCAAAAAGAAACTTCATTAATTAATAACCCTTTT 538 consensus_728#1 TCGTGGCAAC-------------------AAGAGCGATGTCGTTG--------------- 401 **** ** * ** ** * ** ** consensus_728#0 CTTTCTTTTCCTTTTCCTTTTGTTGCAG-AAATGATTGTAACCTTCTTTCCCGTGTTGTG 597 consensus_728#1 CTGCCGGTCGCGTGTTTGTTTATAAAAGGAAATGATTGTAACCTTCTT-CCCGTGTTGTG 460 ** * * * * * *** * ** ******************* *********** consensus_728#0 CCGACTAGGGATGCTGTAGGACGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATA 657 consensus_728#1 CCGACTAGGGATGCTGTAGG-CGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATA 519 ******************** *************************************** consensus_728#0 CGCTACAATATCCCTTTTCTCGCTC----------------------------------- 682 consensus_728#1 CGCTACAATATCCCTTT-CTCGCTCGGTTCCAATCCAACACACACACACCCAGGTTCCGG 578 ***************** ******* consensus_728#0 ------------------------------------------------------------ consensus_728#1 CCGGACGGATCGGGGGGAGGGAAAGGAAACCACAAAGAAAGGTAGAAAAAGAGTAAACCA 638 consensus_728#0 --------------- consensus_728#1 GCAGCAGACAATCAA 653 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||