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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 890 fasta sequence
[CCGCCCACGCGTCCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGAAATAAC-TTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATGCGCCACTGCGC-TT-CCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCGGTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACGACATGAACGAGCTGTACTGCTTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTGCCTGTCGCCGGCCGATANANGAGCGGGTTGTCACCGCGCTGGGAAAGCATTGGC]
[+] EMBL BM630724 [CCGCCCACGCGTCCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGAAATAACTTTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGCGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGA ]
[+] EMBL BM588954 [ CCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGAAATAAC TTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATGCGCCACTGCGCTTT CCGGGGTG ]
[+] EMBL BM649754 [ ccgGGCGAAGAAAATCAACACGAAAGGAGATGAAATAAC TTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTT TTATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTTCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCGAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATCGACGATGCGCCACTGCGC TTACCGGGGTGAAGTTTACCACGGGTATCACTTC ]
[+] EMBL BX622034 [ gGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATGCGCCACTGCGC TT CCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCGGTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACGACATGAACGAGCTGTACTGCTTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTGCCTGTCGCCGGCCGATANANGAGCGGGTTGTCACCGCGCTGGGAAAGCATTGGC]
[-] EMBL AGA284149 [ ATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTAATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATCGACGATGCGCCACTGCGC TT CCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCGGTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACGACATGAACGAGCTGTACTGCCTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTGCCTGT ]
consensusID : consensus_7280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[CCGGGAAATAACTTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCAATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCC]
[+] EMBL BM628016 [CCGGGAAATAACTTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCAATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCC]
consensusID : consensus_7280#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[GTTCGCATCAAGTAGGCCCAGCAAGAACGTAGAGACCGAGTACCACCTACCTAGATATCGTCCCACCGTACCGTGCAAGGTCTTTTTGTATGGTTACCATCTCGAGTTTTAGTGACTTTGCAATACACCACGCCAAGTGGGATCGTAAAGATATCGAAACAGTGTTGATAATTCGACGCAACTTACACACGCTGTACACCCCTTTTTTGTAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCGATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCCGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTG]
[+] EMBL AGA285445 [GTTCGCATCAAGTAGGCCCAGCAAGAACGTAGAGACCGAGTACCACCTACCTAGATATCGTCCCACCGTACCGTGCAAGGTCTTTTTGTATGGTTACCATCTCGAGTTTTAGTGACTTTGCAATACACCACGCCAAGTGGGATCGTAAAGATATCGAAACAGTGTTGATAATTCGACGCAACTTACACACGCTGTACACCCCTTTTTTGTAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCGATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCCGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7280#0 CCGCCCACGCGTCCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGA-AATAACTTTTTT 59
consensus_7280#1 -----------------------------------------CCGGGA-AATAACTTTTTT 18
consensus_7280#2 ----------GTTCG-CATCAAGTAGGCCCAGCAAGAACGTAGAGACCGAGTACCACCTA 49
* * ** *
consensus_7280#0 TTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCAT 119
consensus_7280#1 TTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCAT 78
consensus_7280#2 CCTAGATATCGTCCCACCGTACCGTGCAAGGTCTTTTTGTATGGTTACCATCTCGAGTTT 109
* *** * * * * * *** * *** * * * *
consensus_7280#0 CGTTTACGTCGTCATCGAGTGC-CTTATCAATACTTTGACCAGATTACCGTCCTCTGCAA 178
consensus_7280#1 CGTTTACGTCGTCATCGAGTGC-CTTATCAATACTTTGACCAGATTACCGTCCTCTGCAA 137
consensus_7280#2 TAGTGACTTTGCAATACACCACGCCAAGTGGGATCGTAA--AGATATCGAAACAGTGTTG 167
* ** * * ** * * * * * * * **** * * **
consensus_7280#0 ATAAT------CAACGTAC---CACCGTCCAGGTGCCGAAAG-AG--------------- 213
consensus_7280#1 ATAAT------CAACGTAC---CACCGTCCAGGTGCCGAAAG-AGTTTTTCACATCCGTT 187
consensus_7280#2 ATAATTCGACGCAACTTACACACGCTGTACACCCCTTTTTTGTAGTTTTTCACATCCGTT 227
***** **** *** * * ** ** * **
consensus_7280#0 ------------------------------------------------------------
consensus_7280#1 GGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCAATCACCCCGGGGGGAGAGATTC 247
consensus_7280#2 GGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCGATCACCCCGGGGGGAGAGATTC 287
consensus_7280#0 -------------------------------------CGTCACCACCAACAACATGTCGC 236
consensus_7280#1 GTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGC 307
consensus_7280#2 GTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGC 347
***********************
consensus_7280#0 TCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCA 296
consensus_7280#1 TCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCA 367
consensus_7280#2 TCCGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCA 407
** *********************************************************
consensus_7280#0 ACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGT 356
consensus_7280#1 ACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGT 427
consensus_7280#2 ACTCCAACGGGCAGCTCTG----------------------------------------- 426
*******************
consensus_7280#0 TCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACA 416
consensus_7280#1 TCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACA 487
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 TCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGG 476
consensus_7280#1 TCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGG 547
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 CGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGG 536
consensus_7280#1 CGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCC----- 602
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 CCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGG 596
consensus_7280#1 ------------------------------------------------------------
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 AGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATG 656
consensus_7280#1 ------------------------------------------------------------
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 CGCCACTGCGCTTCCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCG 716
consensus_7280#1 ------------------------------------------------------------
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 GTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACG 776
consensus_7280#1 ------------------------------------------------------------
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 ACATGAACGAGCTGTACTGCTTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTG 836
consensus_7280#1 ------------------------------------------------------------
consensus_7280#2 ------------------------------------------------------------
consensus_7280#0 CCTGTCGCCGGCCGATANANGAGCGGGTTGTCACCGCGCTGGGAAAGCATTGGC 890
consensus_7280#1 ------------------------------------------------------
consensus_7280#2 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||