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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1264 fasta sequence
[CCGGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTAGCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA-GGGCAACGAT-GTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAGGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATAC-GGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC-TTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACTGACTCAGGACCGCT-CCCCCCTCAAATGGCACTCTAGTGGATCTAGCCCATTGACACTTTCTTTGCAAACTATTCTTTATCCGTGCTTTTGCCATCATCTTGTTACAGGCAAAGCTCGTCGTTTCTCCACCGTACGGGTCCGACTACTAATCATCTTCATCATTACAGTTAACGTTTTTCCTTTGCGTTTATCATTTCTTAACACTCTACGTTTAACCATCATGATGGTATATTTAAATGTCTCCCCACTCACTGCAAACAGCCTTGCGTGCCTGCGACCGTTCGCAAATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCACCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGTTAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTACATCGTATCACCGC-GGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAACAT]
[+] EMBL BM585482 [CCGGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTATCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAAAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA GGGCAACGAT GTCGGCGAGGTGCACGTCA ]
[+] EMBL BM584492 [ ccgGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTAGCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA GGGCAACGAT GTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAGGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATACGGGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATCTTTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACA ]
[+] EMBL BX627759 [ CTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTAGCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA GGGCAACGAT GTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAGGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATAC GGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC TTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACCGACTCAGGACCGCT C ]
[+] EMBL BM589546 [ ccgGCGTGTCCCGATGTTTTAGCGCGCATCGTCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCTGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGAGGGGCAACGATGGTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAAGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATAC GGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC TTTTGCCTCTGGTGGAGCTGCTGGCACACGTGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACTGACTCAGGACCTCTCCCCCCCTCAAATGGCACTCT ]
[+] EMBL BM653779 [ ccGGTGCGAAATACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC TTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACTGACTCAGGACCGCT CCCCCCTCAAATGGCACTCTAGTGGATCTAGCCCATTGACACTTTCTTTGCAAACTATTCTTTATCCGTGCTTTTGCCATCATCTTGTTACAGGCAAAGCTCGTCGTTTCTCCACCGTACGGGTCCGACTACTAATCATCTTCATCATTACAGTTAACGTTTTTCCTTTGCGTTTATCATTTCTTAACACTCTACGTTTAACCATCATGATGGTATATTTAAATGTCTCCCCACTCACTGCAAACAGCCTTGCGTGCCTGCGACCGTTCGCAAATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCACCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGTTAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTACATCGTATCACCGC GGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAACA ]
[+] EMBL BM633439 [ GATGGCATATTTATATGTGTCCCCACTCGCTGGAAACAGACTTGCGTGCCTGCGACCGTTCGCAAATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCACCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGTTAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTACATCGTATCACCGCGGGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAACAT]
consensusID : consensus_7281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1006 fasta sequence
[AGAATCCCCGAGGTTTAAGAAGAAGAAGAAGAAGAAGAAAAAGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTACCCGATGTTTTAGCGCGCATACATACTACCACAAAGATGCCTATCGTCGCCCAAGCGCAGTGAAGGCAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGGACCGCAGGCGAACAGAGATCGATCCGGAGGGCCGGGACGGNAAACGCGTCAATCAGGCAGCGGGAAAAGGAGACCGGGGACCCGTGAGCCGANGANNCAGCGNGGCCGGCGGAACAGGTACAACGGAATCCCAGCATCAAAGATACGACAGTATACGCAGAATTCGANGGTNCACGTAACAGAAACCCGATTGCCCATACGGACAAAACACGGTACACGACCCGATTGCTACCAACNAGGATGAAGCCCCATGGGGNAACCCGGAAANCGCCGGAACCGACCGCAAAGGGCCACAAACACAGCCCCCGGAACAGCACCAACCAGNAGAANGCCGTCAAACGCACCCGCAGCANGGGNNGCCACACCATGGAACGCGCCCACCCAGGCACCACCGGAACCGGACAAANAGNGCACCAAACCCCACACGGCCGAGCCCGCGCCACAAACCANAAATGAACNAAGAACNCCAAAAAGCAGCNCACCCGNCAATCANAAATACACACGATCACAANAAGCCCGAGCCAAAATAACCNATAAAATACCAAACCCACNAAGATCACCACCATGGGAAAAAACCCTGGACCAACGGAGANNCGNCTCGCGAACACTACATCCACAAATACGNAGCANCACCCATANNGAGCAAAAACACAACAGCNCCACAGGCCCCGACAACNTGCGANGCAAAANAGGCCACNCACAGACCAACCANCCCCGCGCACGTGCAAAAAACGAAGANATGACGGAATAGCCCGCNACACACCCNACGCAACATTGACCC]
[+] EMBL AL693134 [AGAATCCCCGAGGTTTAAGAAGAAGAAGAAGAAGAAGAAAAAGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTACCCGATGTTTTAGCGCGCATACATACTACCACAAAGATGCCTATCGTCGCCCAAGCGCAGTGAAGGCAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGGACCGCAGGCGAACAGAGATCGATCCGGAGGGCCGGGACGGNAAACGCGTCAATCAGGCAGCGGGAAAAGGAGACCGGGGACCCGTGAGCCGANGANNCAGCGNGGCCGGCGGAACAGGTACAACGGAATCCCAGCATCAAAGATACGACAGTATACGCAGAATTCGANGGTNCACGTAACAGAAACCCGATTGCCCATACGGACAAAACACGGTACACGACCCGATTGCTACCAACNAGGATGAAGCCCCATGGGGNAACCCGGAAANCGCCGGAACCGACCGCAAAGGGCCACAAACACAGCCCCCGGAACAGCACCAACCAGNAGAANGCCGTCAAACGCACCCGCAGCANGGGNNGCCACACCATGGAACGCGCCCACCCAGGCACCACCGGAACCGGACAAANAGNGCACCAAACCCCACACGGCCGAGCCCGCGCCACAAACCANAAATGAACNAAGAACNCCAAAAAGCAGCNCACCCGNCAATCANAAATACACACGATCACAANAAGCCCGAGCCAAAATAACCNATAAAATACCAAACCCACNAAGATCACCACCATGGGAAAAAACCCTGGACCAACGGAGANNCGNCTCGCGAACACTACATCCACAAATACGNAGCANCACCCATANNGAGCAAAAACACAACAGCNCCACAGGCCCCGACAACNTGCGANGCAAAANAGGCCACNCACAGACCAACCANCCCCGCGCACGTGCAAAAAACGAAGANATGACGGAATAGCCCGCNACACACCCNACGCAACATTGACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7281#0 ---------------------------------------CCGGCGGAGAAGAGTGTCAGA 21
consensus_7281#1 AGAATCCCCGAGGTTTAAGAAGAAGAAGAAGAAGAAGAAAAAGCGGAGAAGAGTGTCAGA 60
******************
consensus_7281#0 AGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGT 81
consensus_7281#1 AGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGT 120
************************************************************
consensus_7281#0 -CCCGATGTTTTAGCGCGCAT---CATCTCCACAAAGATGCCT-TCGTCGCCCAAGCGCA 136
consensus_7281#1 ACCCGATGTTTTAGCGCGCATACATACTACCACAAAGATGCCTATCGTCGCCCAAGCGCA 180
******************** * ************** ****************
consensus_7281#0 G-GAAGG-AGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGG-ACCGCAG-CGAA-AG 191
consensus_7281#1 GTGAAGGCAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGGACCGCAGGCGAACAG 240
* ***** ************************************ ******* **** **
consensus_7281#0 AGATCGATCCGGAGGGC-GGGACCGCAAACGC-TCATCAGAGCGGGAAAGAGACCGGGAC 249
consensus_7281#1 AGATCGATCCGGAGGGCCGGGACGGNAAACGCGTCAATCAGGCAGCGG-GAAAAGGAGAC 299
***************** ***** * ****** *** ** * ** * * ***
consensus_7281#0 CGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCG 309
consensus_7281#1 CGGGGAC----CCGTGAGCCGANGANNCAGCGNGGCCGGC--GGAACAGGTACAA---CG 350
** * * ** * * * * ** * * ** * ** * * **
consensus_7281#0 AGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATG 369
consensus_7281#1 GAATCCCA-GCATCAAAGATA-CGACAGTAT-ACGCAGAATTCGANGGTNCACGTAACAG 407
** * * * * * * * ** ** * **** * ** * * * * *
consensus_7281#0 GTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGA-GATGCTTAAGACGAT 428
consensus_7281#1 AAACCCGATTGCCCATACGGACAAAACACGGTACACGACCCGATTGCTACCAACNAGGAT 467
*** ** * * * ** ** *** * ** * * * * * * * ***
consensus_7281#0 GGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGG----TGGAGGGCAACGATGTCG 484
consensus_7281#1 GAAGCCCCATGGGGN-AACCCGGAAANCGCCGGAACCGACCGCAAAGGGCCACAAACACA 526
* * *** * ** * * * ** * ***** ** * *
consensus_7281#0 GCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAG-TACATGAACCGCAAGGGTGGA 543
consensus_7281#1 GCCCCCGGAACAGCACCAACCAGNA-GAANGCCGTCAAACGCACCCGCAGCANGGGNNGC 585
** * ** ** * ** ** ** ** ** * *** *** *
consensus_7281#0 TTCAATCGGCCGTTGGATTTTGTTGCGTAG-CGGCATTGCAGATATACGGGGGAACGATG 602
consensus_7281#1 CACA-----CCATGGAACGCGCCCACCCAGGCACCACCGGAACCGGACAAANAGNGCACC 640
** ** * * * * ** * ** * * ** *
consensus_7281#0 GTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATCTTTTGCCTCTGGTGGAG 662
consensus_7281#1 AAACCCCACACGGCCGAGCCCGCGCCACAAACCANAAATGAACNAAGAACNCCAA-AAAG 699
* **** * **** * * ** * * * * * **
consensus_7281#0 CTGCTGGCACACGCGTTGTTGACATGTGCCATT-CGATCATCATCTATCGGGTCTGCAGG 721
consensus_7281#1 CAGCNCACCCGNCAATCANAAATACACACGATCACAANAAGCCCGAGCCAAAATAACCNA 759
* ** * * * * * * ** * * * * * *
consensus_7281#0 TGCAGATCTAACTGACTCAGGACCGCTCCCCCCTCAAATGGCACTCTAGTGGATCTAGCC 781
consensus_7281#1 TAAAATACCAAACCCACNAAGATCAC--CACCATGGGAAAAAACCCTGG--------ACC 809
* * * ** * ** * * * ** * * ** ** * **
consensus_7281#0 CATTGACACTTTCTTTGCAAACTATTCTTTATCCGTGCTTTTGCCATCATCTTGTTACAG 841
consensus_7281#1 AACGGAGANNCGNCTCGCGAAC-ACTACATCCACAAATACGNAGCANCACCCATANNGAG 868
* ** * * ** *** * * * * ** ** * **
consensus_7281#0 GCAAAGCTCGTCGTTTCTCCACCGTACGGGTCCGACTACTAATCATCTTCATCATTACAG 901
consensus_7281#1 CAAAAACACAACAGCNCCACA------GGCCCCGACAACNTGCGANG-----CAAAANAG 917
*** * * * * ** ** ***** ** * ** * **
consensus_7281#0 TTAACGTTTTTCCTTTGCGTTTATCATTTCTTAACACTCTACGTTTAACCATCATGATGG 961
consensus_7281#1 GCCACNCAC-------AGACCAACCANCCCCGCGCAC-----GTGCAAAAA--ACGAAGA 963
** * ** * *** ** ** * * ** *
consensus_7281#0 TATATTTAAATGTCTCCCCACTCACTGCAAACAGCCTTGCGTGCCTGCGACCGTTCGCAA 1021
consensus_7281#1 NATGACGGAATAGCCCGCNACACACCCNACGCAACATTGACCC----------------- 1006
** *** * * * ** *** * ** * ***
consensus_7281#0 ATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCA 1081
consensus_7281#1 ------------------------------------------------------------
consensus_7281#0 CCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGT 1141
consensus_7281#1 ------------------------------------------------------------
consensus_7281#0 TAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTAC 1201
consensus_7281#1 ------------------------------------------------------------
consensus_7281#0 ATCGTATCACCGCGGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAA 1261
consensus_7281#1 ------------------------------------------------------------
consensus_7281#0 CAT 1264
consensus_7281#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||