These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence [AGAATTGCCNGAGGTTATGTGGAGCTGATACTGGCACAACANGTGTGCTTNGANNGCGTCACGGAGCGCATCAACGGCAATGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACTGCCGCGTGCTTGATACTTGCACTTGAAGCGCTATCCAGGTCGGGCTGCGCAGTGTGTTCAAAAAGCTTGAACAANGCTTGGTGTTCCTTCCCGGTATACGTAGCTNGGGACATTTTGCGGCCGTTCTTGACGGGGGTCGCAAAGGTGTTGAAAAGCTGTGGACCGTTCTGGCAACAATATCTGACCCCGGTGCAGAAAAATGGATTTCCTTTGGTACGGCTCGACCTTGTTACCGGGGCTTGGGTTGGGAAACAACATTCCGGGGCTCGGAATTTGCCGACCTGGTGGAGTGGGGGCCNACGTTNAATTTGTTACCGACCGGGTTAACGGNTATGGNAACTGTGGNNTNGCAGTGGCGACCTGGAACNACCCTTATACCAGAGGGAGACCACCGNGGTGAGCCNGGTAATTACACCACGGNANGAGGATNNGTGGGACAAAGGNNTTTTATCCCAACTTATATANCACCCCCTAGNGCACANACATGTATGAGGTCCNACAACCTCGGTGCAAAAACAGGTTGTNAACNCTCGTGAAANAGTAGCCCTTTTGGGGGAAACCCCCTGCGTAACAACATACGNTTTACCCCCGGGACACAGAGCCCAACNNTGGAAAGGAATTTTTGTGGCGCCCCACACAAATANGCAANAGATACCACAATGCTGGCCCGGCACTNAGGGCCCGCCAAAC] [+] EMBL AL692198 [AGAATTGCCNGAGGTTATGTGGAGCTGATACTGGCACAACANGTGTGCTTNGANNGCGTCACGGAGCGCATCAACGGCAATGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACTGCCGCGTGCTTGATACTTGCACTTGAAGCGCTATCCAGGTCGGGCTGCGCAGTGTGTTCAAAAAGCTTGAACAANGCTTGGTGTTCCTTCCCGGTATACGTAGCTNGGGACATTTTGCGGCCGTTCTTGACGGGGGTCGCAAAGGTGTTGAAAAGCTGTGGACCGTTCTGGCAACAATATCTGACCCCGGTGCAGAAAAATGGATTTCCTTTGGTACGGCTCGACCTTGTTACCGGGGCTTGGGTTGGGAAACAACATTCCGGGGCTCGGAATTTGCCGACCTGGTGGAGTGGGGGCCNACGTTNAATTTGTTACCGACCGGGTTAACGGNTATGGNAACTGTGGNNTNGCAGTGGCGACCTGGAACNACCCTTATACCAGAGGGAGACCACCGNGGTGAGCCNGGTAATTACACCACGGNANGAGGATNNGTGGGACAAAGGNNTTTTATCCCAACTTATATANCACCCCCTAGNGCACANACATGTATGAGGTCCNACAACCTCGGTGCAAAAACAGGTTGTNAACNCTCGTGAAANAGTAGCCCTTTTGGGGGAAACCCCCTGCGTAACAACATACGNTTTACCCCCGGGACACAGAGCCCAACNNTGGAAAGGAATTTTTGTGGCGCCCCACACAAATANGCAANAGATACCACAATGCTGGCCCGGCACTNAGGGCCCGCCAAAC] consensusID : consensus_7282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence [TACTACGGACCAAAAAAAAAAGAATAAAAATAAATTTCTTCTACACTGAGTAGAAGATCCTAGGGAGTAATAACATAGTAACGAGACTGGCGGTAAACATGCATCTGTGCGGGTAACGAAATGCAAGAAAGATCACGGATCGGATGGATGACGAGAGCAGTTAGAATATGCGCTCATAGAATAGCAGGTAGGCCTGGACCTTCAGTACGCTCTCCTCCGTGACCTCGCGCACGTAGCTGTCCGATACGCAGTACCATTTGCCGGGCGGCGTTTCCACCTCCTCCGCCGCGGGCCGGGCTTGTGGCTTGTGGGCGTACCCGACCGCACCTTCCAGCTCGTCCTGCGGCTGCCTGTCCCGCGGCTGGGACCGCTTGCGGCCGCACTCGTCGTTGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGT-------ACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGACACCAGCTTGTTCAGCTTTTTGAACACACTGCGCAGCCCGACCTGGAAGCGCTTCAAGTGCAG] [-] EMBL BX614583 [TACTACGGACCAAAAAAAAAAGAATAAAAATAAATTTCTTCTACACTGAGTAGAAGATCCTAGGGAGTAATAACATAGTAACGAGACTGGCGGTAAACATGCATCTGTGCGGGTAACGAAATGCAAGAAAGATCACGGATCGGATGGATGACGAGAGCAGTTAGAATATGCGCTCATAGAATAGCAGGTAGGCCTGGACCTTCAGTACGCTCTCCTCCGTGACCTCGCGCACGTAGCTGTCCGATACGCAGTACCATTTGCCGGGCGGCGTTTCCACCTCCTCCGCCGCGGGCCGGGCTTGTGGCTTGTGGGCGTACCCGACCGCACCTTCCAGCTCGTCCTGCGGCTGCCTGTCCCGCGGCTGGGACCGCTTGCGGCCGCACTCGTCGTTGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCAT CGCATCGCCTGCTCTTTGGCCtc ] [+] EMBL AGA283959 [ TGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGT ACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGACACCAGCTTGTTCAGCTTTTTGAACACACTGCGCAGCCCGACCTGGAAGCGCTTCAAGTGCAG] [+] EMBL AGA281006 [ TGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGT ACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGACACCAGCTTGTTCAGCTTTTTGAACACACTGC ] [-] EMBL BM618504 [ GTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGTCGGCCGCACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGcgg ] consensusID : consensus_7282#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [GAATTCCCCCGAGGTTTCGATGCACGGCGGCACTATGTCGCGTACGTGAAGGTGCGGCCGACCTTCGGCCCGGGCGATCCGCGGTGGAAGTTCATTCCGCAGGGCACGAAGGACGAGCTGGACCGCAAGTCCGAGCAGGAGATGGCCAAAGAGCAGGCGATGCGCATGGGGCTGCACGTGCGGGACAGTGATGATTCGTTCAGCTCCTCGCACACGCCCAGCGACAACGACGAGTGCGGCCGCAAGCGGTCCCAGCCGCGGGACAGGCAGCCGCAGGACGAGCTGGAAGGTGCGGTCGGGTACGCCCACAAGCCACAAGCCCGGCCCGCGGCGGAGGAGGTGGAAACGCCGCCGGCAAATGGTACTGCGTATCGGACAGCTACGTGCGCGAGGTCACGGAGGAGAGCGTACTGAAGGTCCAGGCCTACCTGCTATTCTATGAGCGCATATTCTAACTGCTCTCGTCATCCATCCGATCCGTGATCTTTCTTGCATTTCGTNACCCGCACAGATGCATGTTTACCGGCAGTCTCGTTACTATGTTATTACTCCCTAGGATCTTCTACTCAGTGTAGGAAGAAATTTATTTTTATTTCTTTTATATTAGGTCCGTCAGTACACCGACAGCAATCGTGAGCCGTTTACTCANTTTTGATGAGTGGTCAATAATTTATAATTTTTGCCATCTATTTTCATGTTACTAT] [+] EMBL AL694678 [GAATTCCCCCGAGGTTTCGATGCACGGCGGCACTATGTCGCGTACGTGAAGGTGCGGCCGACCTTCGGCCCGGGCGATCCGCGGTGGAAGTTCATTCCGCAGGGCACGAAGGACGAGCTGGACCGCAAGTCCGAGCAGGAGATGGCCAAAGAGCAGGCGATGCGCATGGGGCTGCACGTGCGGGACAGTGATGATTCGTTCAGCTCCTCGCACACGCCCAGCGACAACGACGAGTGCGGCCGCAAGCGGTCCCAGCCGCGGGACAGGCAGCCGCAGGACGAGCTGGAAGGTGCGGTCGGGTACGCCCACAAGCCACAAGCCCGGCCCGCGGCGGAGGAGGTGGAAACGCCGCCGGCAAATGGTACTGCGTATCGGACAGCTACGTGCGCGAGGTCACGGAGGAGAGCGTACTGAAGGTCCAGGCCTACCTGCTATTCTATGAGCGCATATTCTAACTGCTCTCGTCATCCATCCGATCCGTGATCTTTCTTGCATTTCGTNACCCGCACAGATGCATGTTTACCGGCAGTCTCGTTACTATGTTATTACTCCCTAGGATCTTCTACTCAGTGTAGGAAGAAATTTATTTTTATTTCTTTTATATTAGGTCCGTCAGTACACCGACAGCAATCGTGAGCCGTTTACTCANTTTTGATGAGTGGTCAATAATTTATAATTTTTGCCATCTATTTTCATGTTACTAT] consensusID : consensus_7282#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [GCAACAACAAGTGTGCTGCGAGGCGTGCACGGAGCGCATCAACGGCAAGGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACCGCCCGCCGTGCTTGATACTGCACTTGCAAGCGCTTCCAGGTCGCTGCTGCGCAGTGTGTTCAAAAAGCTGAACAAGCTGGTGTCCTTCCCGTATCGTGCTGGAGCATTGCGCCCGTTCTTGCGGGGTCNGTAAGGTGAAGCGGGCGTCCGCACATCCGCC] [+] EMBL AL692255 [GCAACAACAAGTGTGCTGCGAGGCGTGCACGGAGCGCATCAACGGCAAGGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACCGCCCGCCGTGCTTGATACTGCACTTGCAAGCGCTTCCAGGTCGCTGCTGCGCAGTGTGTTCAAAAAGCTGAACAAGCTGGTGTCCTTCCCGTATCGTGCTGGAGCATTGCGCCCGTTCTTGCGGGGTCNGTAAGGTGAAGCGGGCGTCCGCACATCCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7282#0 -------AGAATTGCCNGAGGTTATGTGGAGCTGATACTGGCACAACANGTGTGCTTNGA 53 consensus_7282#3 ---------------------------------------GCAACAACAAGTGTGCTGCGA 21 consensus_7282#1 TACTACGGACCAAAAAAAAAAGAATAAAAATAAATTTCTTCTACACTGAGTAGAAGATCC 60 consensus_7282#2 -----------------------------------GAATTCCCCCGAGGTTTCGATGCAC 25 * * consensus_7282#0 NNGCGTCACGGAGCGCATCAACGGCAATGGCGGCC--CGTCGGTCAACACG---AACGCG 108 consensus_7282#3 GGCGTGCACGGAGCGCATCAACGGCAAGGGCGGCC--CGTCGGTCAACACG---AACGCG 76 consensus_7282#1 TAGGGAGTAATAACATAGTAACGAGACTGGCGGTAAACATGCATCTGTGCGGGTAACGAA 120 consensus_7282#2 GGCGGCACTATGTCGCGTACGTGAAGGTGCGGCCGACCTTCGGCCCGGGCGA--TCCGCG 83 * * * * * * * ** ** consensus_7282#0 AC-CAAGCAGTTCCTCATCTCGCA--ACTGCCG--CGTGCTTGATACTTGCACTTG-A-A 161 consensus_7282#3 AC-CAAGCAGTTCCTCATCTCGCA--ACCGCCCGCCGTGCTTGATACT-GCACTTGCA-A 131 consensus_7282#1 ATGCAAGAAAGATCACGGATCGGATGGATGACGAGAGCAGTTAGAATATGCGCTCATAGA 180 consensus_7282#2 GTGGAAGTTCATTC-CGCAGGGCACGAAGGACGAGCTGGACCGCAAGT-CCGAGCAGGAG 141 *** * * * * * * * * consensus_7282#0 GCGCTATCCAGGTCGG-GCT----GCGCAGTGTGTTCAAAAAGCTTGAACAANGCTTGGT 216 consensus_7282#3 GCGCT-TCCAGGTCGCTGCT----GCGCAGTGTGTTCAAAAAGCT-GAACAAG--CTGGT 183 consensus_7282#1 ATAGCAGGTAGGCCTGGACCTTCAGTACGCTCTCCTCCGTGACCTCGCGCACG--TAGCT 238 consensus_7282#2 ATGGCCAAAGAGCAGGCGAT----GCGCATGGGGCTGCACGTGCGGGACAGTGATGATTC 197 * * * * * * consensus_7282#0 GTTCC-TTCCCGGTATACGTAGCTNGGGACATTTTGCGGCCGTTCTTGACGGGGGTCGCA 275 consensus_7282#3 GTCCT-TCCC--GTAT-CGTG--CTGGAGCATT--GCGCCCGTTCTTGC--GGGGTCNGT 233 consensus_7282#1 GTCCGATACGCAGTAC-CATTTGCCGGGCGGCGTTTCCACCTCCTCCGCCGCGGGCCGGG 297 consensus_7282#2 GTTCAGCTCCTCGCACACGC---CCAGCGACAACGACGAGTGCGGCCGCAAGCGGTCCCA 254 ** * * * * * * * * ** * consensus_7282#0 AAGGTGTTGAAAAGCTGTGGACCGTTCTGGCAACAATATCTGACCCCGG-TGCAGAAAAA 334 consensus_7282#3 AAGGTG--AAGCGGGCGTCCGCACATCCGCC----------------------------- 262 consensus_7282#1 CTTGTGGCTTGTGGGCGTACCCGACCGCACCTTCCAGCTCGTCCTGCGGCTGCCTGTCCC 357 consensus_7282#2 GCCGCG--GGACAGGCAGCCGCAGGACGAGCTGGAAGGTGCGGTCGGGTACGCCCA-CAA 311 * * * * * consensus_7282#0 TGGATTTCCTTTGGTACGGCTCGACCTTGTTACCGGGGCTTGGGTTGGGAAACAACATTC 394 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 GCGGCTGGGACCGCTTGCGGCCGCACTCGTCGTTGTCGCTGGGCGTGTGCGAGGAGCTGA 417 consensus_7282#2 GCCACAAGCCCGGCCCGCGGCGGAGGAGGTGGAAACGCCGCCGGCAAATGGTACTGCGTA 371 consensus_7282#0 CGGGGCTCGGAATTTGCCGACCTGGTGGAGTGGGGGCCNACGTTNAATTT--GTTACCGA 452 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 ACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCT--TTGGCCAT 475 consensus_7282#2 TCGGACAGCTACGTGCGCGAGGTCACGGAGGAGAGCGTACTGAAGGTCCAGGCCTACCTG 431 consensus_7282#0 CCGGGTTAACGGNTATGGNAACTGTGGNNTNGCAGTGGCGACCTGGAAC-NACCCTTATA 511 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 CTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATG-AACTTCCACC 534 consensus_7282#2 CTATTCTATGAGCGCATATTCTAACTGCTCTCGTCATCCATCCGATCCGTGATCTTTCTT 491 consensus_7282#0 CCAGAGGGAGACCACCGNGGTGAGCCNGGTAATTACACCACGGNANGAGG-ATNNGTGGG 570 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 GCGGATCGCCCGGGCCGAAGGTACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGA 594 consensus_7282#2 GCATTTCGTNACCCGCACAGATGCATGTTTACCGGCAGTCTCGTTACTATGTTATTACTC 551 consensus_7282#0 ACAAAGGNNTTTTATCCCAACTTATATANCACCCCCTAGNGCACANACATGTATGAGGTC 630 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 GCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGAT 654 consensus_7282#2 CCTAGGATCTTCTACTCAGTGTAGGAAGAAATTTATTTTTATTTCTTTTATATTAGGTCC 611 consensus_7282#0 CNACA-ACCTCGGTGCAAAAACAGGTTGTNAACNCTCGTGAAANAGTAGCCCTTTTGGGG 689 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 GTGCG-ACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGA 713 consensus_7282#2 GTCAGTACACCGACAGCAATCGTGAGCCGTTTACTCANTTTTGATGAGTGGTCAATAATT 671 consensus_7282#0 GAAACCCCCTGCGTAACAACATACGNTTTACCCCCGGGACACAGAGCCCAACNNTGGAAA 749 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 AGGACACCAGCTTGTTCAGCTTTTTGAACACACTGCGCAGCCCGACCTGGAAGCGCTTCA 773 consensus_7282#2 TATAATTTTTGCCATCTATTTTCATGTTACTAT--------------------------- 704 consensus_7282#0 GGAATTTTTGTGGCGCCCCACACAAATANGCAANAGATACCACAATGCTGGCCCGGCACT 809 consensus_7282#3 ------------------------------------------------------------ consensus_7282#1 AGTGCAG----------------------------------------------------- 780 consensus_7282#2 ------------------------------------------------------------ consensus_7282#0 NAGGGCCCGCCAAAC 824 consensus_7282#3 --------------- consensus_7282#1 --------------- consensus_7282#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||