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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 711 fasta sequence
[CCGGTCCAGGAAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCAAGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCATGGTGTTTGAG]
[+] EMBL BM599767 [CCGGTCAAGGAAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCTGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTGCTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGTCAGCAGGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCAT ]
[+] EMBL BM587785 [ CCGGGAAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCAAGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCATGGTGTTTGAG]
[+] EMBL BM589276 [ ccgCAAGGAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCAAGTCCGGTCGCCGGTAACGAACATC ]
consensusID : consensus_7288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence
[CGACCCACGCGTCCGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGCGAGAGAGAATTTAGGATAGATTCCTTCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAAGTGCTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGGCAGCAGGTCCGTTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCAT]
[+] EMBL BM647101 [CGACCCACGCGTCCGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGCGAGAGAGAATTTAGGATAGATTCCTTCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAAGTGCTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGGCAGCAGGTCCGTTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCAT]
[+] EMBL BM577900 [ GGTGCGCAAGTGTGTTTGTGCGGCTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGATGTTTGATAAGCACGCACACGGGCTGTG ]
consensusID : consensus_7288#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[CGACCCACGCGTCCGAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCACAATGTGAACGCCGCCATGGTGTTTGAGTTTCTGCTGAAGATAATCGACGTGATGCAGTCGTACTTTGGCAAGATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGTGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGCCGGGAAGGCATCAAGTACCGCCGGAACGAGCTGTTCCTGGACGTGCTCGAGTACGTGAATCTGCT]
[+] EMBL BM602965 [CGACCCACGCGTCCGAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCACAATGTGAACGCCGCCATGGTGTTTGAGTTTCTGCTGAAGATAATCGACGTGATGCAGTCGTACTTTGGCAAGATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGTGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGCCGGGAAGGCATCAAGTACCGCCGGAACGAGCTGTTCCTGGACGTGCTCGAGTACGTGAATCTGCT]
consensusID : consensus_7288#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[GCAGAATCGCCCGAGGTATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGCGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGGCGGGAAGGCATCAAGTACCGCGGAACGAGCTGTTCCTCGACGTGCTCGAGTACGTGAATCTGCTGATGAGCCCGCAGGGCCAGGTGCTGTCCGCGCACGTCGCCGGTAAGGTCGTGATGAAGTCGTACCTGTCCGGCATGCCGGAGTGCA]
[+] EMBL AL695716 [GCAGAATCGCCCGAGGTATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGCGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGGCGGGAAGGCATCAAGTACCGCGGAACGAGCTGTTCCTCGACGTGCTCGAGTACGTGAATCTGCTGATGAGCCCGCAGGGCCAGGTGCTGTCCGCGCACGTCGCCGGTAAGGTCGTGATGAAGTCGTACCTGTCCGGCATGCCGGAGTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7288#2 ------------------------------------------------------------
consensus_7288#3 ------------------------------------------------------------
consensus_7288#0 CCGGTCCAGGAA---GGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTG 57
consensus_7288#1 -CGACCCACGCGTCCGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTG 59
consensus_7288#2 -----------------CGACCCACGCGTCCGAGCGGGCAAATATCTGGCTGGCGGCCGT 43
consensus_7288#3 ------------------------------------------------------------
consensus_7288#0 ATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGT 117
consensus_7288#1 ATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGT 119
consensus_7288#2 AACGAAGCACAATGTGAACGCCGCCATGGTGTTTGAGTTTCTGCTGAAGATAATCG---A 100
consensus_7288#3 ------------------------------------------------------------
consensus_7288#0 GTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCG 177
consensus_7288#1 GTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCG 179
consensus_7288#2 CGTGATGCAGTCGTACTTT-GGCAAGATTTCGGAGGAAAACATCAAGAACAACTTCGTGC 159
consensus_7288#3 ------GCAGAATCGCCCG-AG--GTATTTCGGAGGAAAACATCAAGAACAACTTCGTGC 51
consensus_7288#0 CGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGG 237
consensus_7288#1 CGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGG 239
** * *** * * * ** * * ***
consensus_7288#2 T----------GATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAA--A 207
consensus_7288#3 T----------GATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAA--A 99
consensus_7288#0 GACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTG 297
consensus_7288#1 GACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTG 299
* * ** * * ** ** **** ***** * *
consensus_7288#2 ACTCG---GACACGGGTGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGA 264
consensus_7288#3 ACTCG---GACACGGGCGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGA 156
consensus_7288#0 TCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGA 357
consensus_7288#1 TCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGA 359
**** *** * * * * * * * * * ** * *** ** **
consensus_7288#2 CGAAG----GAGGAGCAGGCCCAGATAACGTCC--CAGGTGACGGGCCAGATCGGAT--G 316
consensus_7288#3 CGAAG----GAGGAGCAGGCCCAGATAACGTCC--CAGGTGACGGGCCAGATCGGAT--G 208
consensus_7288#0 GAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTG 417
consensus_7288#1 GAG-----CGAGAGAGAATTTAGGATAGATTCCTTCGCCTGGCCGAGTGCATTGCATTTG 414
*** * **** *** * ** * * ** * ** *
consensus_7288#2 GCGCCGGGAAGGCATCAAGTACCGCCGGAACGAGCTGTTCCTGGACGTGCTCG----AGT 372
consensus_7288#3 GCGGCGGGAAGGCATCAAGTACCGC-GGAACGAGCTGTTCCTCGACGTGCTCG----AGT 263
consensus_7288#0 GGACCAACAATATACTGA-TAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGAT 476
consensus_7288#1 GGACCAACAATATACTGA-TAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGAT 473
* * ** * * ** *** * * *** * * * * * * *
consensus_7288#2 ACGTGAATC--TGCT--------------------------------------------- 385
consensus_7288#3 ACGTGAATC--TGCTGATGAGCCCGCAGGGCCAGGTGCTGTCCGCGCACGTCGCCGGTAA 321
consensus_7288#0 CGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGA 536
consensus_7288#1 CGGTGGATTGTTCGTGTACAACCATAAGGGAGAAGTGCTGATCTCCCGCGTGTACCGCGA 533
*** ** * *
consensus_7288#2 ------------------------------------------------------------
consensus_7288#3 GGTCGT--GATGAAGTCGTACCTGTCCGGCATGCCGGAGTGCA----------------- 362
consensus_7288#0 TGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCA 596
consensus_7288#1 TGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGGCAGCA 593
consensus_7288#2 ------------------------------------------------------------
consensus_7288#3 ------------------------------------------------------------
consensus_7288#0 AGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAA 656
consensus_7288#1 GGTCCGTTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAA 653
consensus_7288#2 -------------------------------------------------------
consensus_7288#3 -------------------------------------------------------
consensus_7288#0 TATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCATGGTGTTTGAG 711
consensus_7288#1 TATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCAT---------- 698
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||