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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1112 fasta sequence
[TTTGATAAATACTTTATTCGTGTACGAAACCATTGCCACTACACCGCGCGTTTAACTGGGGCTGCCATCCGCTTGCGCACTACTCGCACAACGCATCTAGGTCGGGAACGCACATGCCCATCAGCGGATCGAACCGCTCGCCGGCAGCGCACTTGAACTTGCTCTTCTTGAACTTGTCCAGCTTCTTGAGCGTGCAGACGAAGTAGCGACCGCAGTTGTTCGGATCGGCAAAGGTGCCCTCCTCCAGACACTGGAACTTTACCTTCAGCTTCGGTTGCTCCTCAGCTACCGGGGTGACGGGCTCAACCTCCGTTTCCACCGGCTCCACCGCACTATCGACTTCCGCTGGGTGCGACTCCTCGGCAACTTCAGCCGCCGCCAGCTCGTCGTCCAGCTCATCAAACGGCAGCGAACGTCCCGCCACCGCAAAGGCACACCGTCCGCGGAACGCATTGTACACCTGGCCCATCGGGCACTGCATCTTGTACTGCAGGTAGCCACCGAACATGTTCCACACGCACCAGAAGTAAAAAGTCGGATCGGCCGGATCGGGGAACCGACCCGGGCCCATGCACGTGAACTCCCCGGGGAAGCAAACGCTCTGGTCGGCCGTACAAAAAAAGCTTCAGGAGTCTCTGGTGCCTCGGTGCCGGTGGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGATTCCTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGAGCTCTACCGATGGTTCGGAGCTAGCTTCCGGAGCCTCAGTCTCCACAGGCGATGCTGGTGTCGTTTCCGAAGCTTCAGGTTCCACGGATGCTTCCGAGGTAACTTCCTCAACTTCGGCTTCCACCTCAGGCTCTGATGGTACCGTTTCGGAACCCGTTTCCTCTTCTACCTCTGGGAGAACTGGTGCTTCGGTTTCTTCCGGAACTTCCGGTCTCTCTGTTTCTACCTGCTCTGGTGTTTCTGGAACTGCGGCTGTAGAAGCGTCCTCCGAGACTTCGGTCTCAGCAGCTACGCCCTCCGTCGATTGTTCGGACTGTACACTTTCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG]
[+] EMBL CNS08FBJ [TTTGATAAATACTTTATTCGTGTACGAAACCATTGCCACTACACCGCGCGTTTAACTGGGGCTGCCATCCGCTTGCGCACTACTCGCACAACGCATCTAGGTCGGGAACGCACATGCCCATCAGCGGATCGAACCGCTCGCCGGCAGCGCACTTGAACTTGCTCTTCTTGAACTTGTCCAGCTTCTTGAGCGTGCAGACGAAGTAGCGACCGCAGTTGTTCGGATCGGCAAAGGTGCCCTCCTCCAGACACTGGAACTTTACCTTCAGCTTCGGTTGCTCCTCAGCTACCGGGGTGACGGGCTCAACCTCCGTTTCCACCGGCTCCACCGCACTATCGACTTCCGCTGGGTGCGACTCCTCGGCAACTTCAGCCGCCGCCAGCTCGTCGTCCAGCTCATCAAACGGCAGCGAACGTCCCGCCACCGCAAAGGCACACCGTCCGCGGAACGCATTGTACACCTGGCCCATCGGGCACTGCATCTTGTACTGCAGGTAGCCACCGAACATGTTCCACACGCACCAGAAGTAAAAAGTCGGATCGGCCGGATCGGGGAACCGACCCGGGCCCATGCACGTGAACTCCCCGGGGAAGCAAACGCTCTGGTCGGCCGTACAAAAAAAGCTTCAGGAGTCTCTGGTGCCTCGGTGCCGGTGGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGATTCCTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGAGCTCTACCGATGGTTCGGAGCTAGCTTCCGGAGCCTCAGTCTCCACAGGCG ]
[-] EMBL BM580460 [ gGCTTCAGGAGTCTCTGGTGCCTCGGTGCCGGTGGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGTTTCCTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGGGCTCTACCGACGGTTCGGAGCTAGCTTCCGGAGCCTCAGTCTCCACAGGCGATGCTGGTGTCGTTTCCGAAGCTTCAGGTTCCACGGATGCTTCCGAGGTAACTTCCTCAACTTCGGCTTCCACCTCAGGCTCTGATGGTACCGTTTCGGAACCCGTTTCCTCTTCTACCTCTGGGAGAACTGGTGCTTCGGTTTCTTCCGGAACTTCCGGTCTCTCTGTTTCTACCTGCTCTGGTGTTTCTGGAACTGCGGCTGTAGAAGCGTCCTCCGAGACTTCGGTCTCAGCAGCTACGCCCTCCGTCGATTGTTCGGACTGTACACTTTCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG]
consensusID : consensus_7291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence
[CCGCGGACGCGTGGGCGAGCGTCTCACCAACTCGCTGATGATGAAGGGCCGCAACAACGGCAAGAAGCTGAAGGCGGTGCGCATCGTGCGCCACGCGTTCGAAATCATGCATCTGCTGACCGGCGAGAACCCGCTGCAGATTGTGGTGCACGCCATCATCAACTCGGGTCCGCGTGAAGACTCCACCCGTATCGGCCGTGCCGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGCATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAAGGGTTCGTCGAACTCGTACGCCATCAAGAAAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAACCGTTGCTTGGCGGTGGTGGTCCCTCTCCTCCTAACAAAAAAT]
[+] EMBL BM612507 [CCGCGGACGCGTGGGCGAGCGTCTCACCAACTCGCTGATGATGAAGGGCCGCAACAACGGCAAGAAGCTGAAGGCGGTGCGCATCGTGCGCCACGCGTTCGAAATCATGCATCTGCTGACCGGCGAGAACCCGCTGCAGATTGTGGTGCACGCCATCATCAACTCGGGTCCGCGTGAAGACTCCACCCGTATCGGCCGTGCCGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGCATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAAGGGTTCGTCGAACTCGTACGCCATCAAGAAAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAACCGTTGCTTGG ]
[-] EMBL AGA281564 [ TGTCTCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGCATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAAGGGTTCGTCGAACTCGTACGCCATCAAG AAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAACCGTTGCTTGTCGGTGGTGGTCCCTCTCCTCCTAACAAAAAAT]
consensusID : consensus_7291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 387 fasta sequence
[AGACACATCACACCACCCGGGATCATAATTTGGCATGGTGGCCAAAGGGAAGAAAAAGTTCATCAAGCTTCTCGAACGGGAGGATATGCATTCATGCATCTACATCCAGCTGTGTGCGTTCCGATCTGCCATAACTATTGGTTATACAGCTTTTTCCGTCTCTAAAAAGAGGACAAATCAATAGAACATCGCTGGTGTGTCCATCTACAGGTTAATGAGGACTAGAGGAGCAAAATACCCGCTTCTTGCAGGATACTTACCCATGAGTGTGTTTGTTCTAATTGGCTACAGCAACAAAACGATACGCCCTACAGCAAATTCACGATAGCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTGGAAGCAAAAAAAAAA]
[+] EMBL CF541628 [AGACACATCACACCACCCGGGATCATAATTTGGCATGGTGGCCAAAGGGAAGAAAAAGTTCATCAAGCTTCTCGAACGGGAGGATATGCATTCATGCATCTACATCCAGCTGTGTGCGTTCCGATCTGCCATAACTATTGGTTATACAGCTTTTTCCGTCTCTAAAAAGAGGACAAATCAATAGAACATCGCTGGTGTGTCCATCTACAGGTTAATGAGGACTAGAGGAGCAAAATACCCGCTTCTTGCAGGATACTTACCCATGAGTGTGTTTGTTCTAATTGGCTACAGCAACAAAACGATACGCCCTACAGCAAATTCACGATAGCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTGGAAGCAAAAAAAAAA]
[+] EMBL BM578283 [ ccgGGATAAGAGGAGCAGAATACCCGCTTCTTGCAAGACACTTACCCTTGAGTGTGTTTGTTCTAATTGGCTACTGCAACAAAACGATACGCCCTACAGCAAATTCACGATAGCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTG ]
consensusID : consensus_7291#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 86 fasta sequence
[CTTCAGTGGGAGGCACTTCCGTTTCGGTTGGAATCTCGGGCGCTGGTTCCGAGGCCGGTTCGGTAAAACCAGTAGGCCAAAAGTTC]
[+] EMBL CNS08G4X [CTTCAGTGGGAGGCACTTCCGTTTCGGTTGGAATCTCGGGCGCTGGTTCCGAGGCCGGTTCGGTAAAACCAGTAGGCCAAAAGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7291#0 TTTGATAAATACTTTATTCGTGTACGAAACCATTGCCACTACACCGCGCGTTTAACTGGG 60
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 GCTGCCATCCGCTTGCGCACTACTCGCACAACGCATCTAGGTCGGGAACGCACATGCCCA 120
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 TCAGCGGATCGAACCGCTCGCCGGCAGCGCACTTGAACTTGCTCTTCTTGAACTTGTCCA 180
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 GCTTCTTGAGCGTGCAGACGAAGTAGCGACCGCAGTTGTTCGGATCGGCAAAGGTGCCCT 240
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 CCTCCAGACACTGGAACTTTACCTTCAGCTTCGGTTGCTCCTCAGCTACCGGGGTGACGG 300
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 GCTCAACCTCCGTTTCCACCGGCTCCACCGCACTATCGACTTCCGCTGGGTGCGACTCCT 360
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 CGGCAACTTCAGCCGCCGCCAGCTCGTCGTCCAGCTCATCAAACGGCAGCGAACGTCCCG 420
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 CCACCGCAAAGGCACACCGTCCGCGGAACGCATTGTACACCTGGCCCATCGGGCACTGCA 480
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 TCTTGTACTGCAGGTAGCCACCGAACATGTTCCACACGCACCAGAAGTAAAAAGTCGGAT 540
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------CCGCGGACGCGTGGGCGAGCGTCTCACCAACTCGCTGATGATGAAGGGCCGCAA 54
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 CGGCCGGATCGGGGAACCGACCCGGGCCCATGCACGTGAACTCCCCGGGGAAGCAAACGC 600
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 CAACGGCAAGAAGCTGAAGGCGGTGCGCATCGTGCGCCACGCGTTCGAAATCATGCATCT 114
consensus_7291#2 ------------------------AGACACATCACACCACCCGGGATCATAATTTGGCAT 36
consensus_7291#0 TCTGGTCGGCCGTA---CAAAAAAAGCTTCAGGA---GTCTCTGGTGCCTCGGTGCCGGT 654
consensus_7291#3 --------------------------CTTCAGTG---GGA---GGCACTTCCGTTTCGGT 28
consensus_7291#1 GCTGACCGGCGAGAACCCGCTGCAGATTGTGGTGCACGCCATCATCAACTCGGGTCCGCG 174
consensus_7291#2 GGTGGCCAAAGGGAAGAAAAAGTTCATCAAGCTTCTCGAACGGGAGGATATGCATTCA-- 94
* *
consensus_7291#0 GGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGATTC 714
consensus_7291#3 TGGAATCTCGGGCGCTGGTTCCGAGGCCGGTTCGGTAA---AACCAGTAGGCCAAAAGTT 85
consensus_7291#1 TGAAGACTCCACCCGTATCGGCCGTGCCGGTACCGTCCGTCGTCAGGCCGTCGATGTGTC 234
consensus_7291#2 TGCATCTACATCCAGCTGTGTGCGTTCCGATCTGCCAT---AACTATTGGTTATACAGCT 151
* * * * *
consensus_7291#0 CTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGAGCTCTACCGATGGTTCGGAGCTAGC 774
consensus_7291#3 C----------------------------------------------------------- 86
consensus_7291#1 TCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGC 294
consensus_7291#2 TTTTC--CGTCTCTAAAAAGAGGACAAATCAATAGAACATCGCTGGTGTGTCCATCTACA 209
consensus_7291#0 TTCCGGAGCCTCAGTCTCCACAGGCGATGCTGGTGTCGTTTCCGAAGCTTCAGGTTCCAC 834
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAA 354
consensus_7291#2 GGTTAATGAGGACTAGAGGAGCAAAATACCCGCTTCTTGCAGGATACTTACCCATGAGTG 269
consensus_7291#0 GGATGCTTCCGAGGTAACTTCCTCAACTTCGGCTTCCACCTCAGGCTCTGATGGTACCGT 894
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 GGGTTCGTCGAACTCGTACGCCATCAAGAAAGAAGGATGAGCTGGAGCGTGTGGCCAAGT 414
consensus_7291#2 TGTTTGTTCTAATTGG--CTACAGCAACAAAACGATACGCCCTACAGCAAATTCACGATA 327
consensus_7291#0 TTCGGAACCCGTTTCCTCTTCTACCTCTGGGAGAACTGGTGCTTCGGTTTCTTCCGGAAC 954
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 CTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAA 474
consensus_7291#2 GCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTGGAAGCAAAAAAAAAA 387
consensus_7291#0 TTCCGGTCTCTCTGTTTCTACCTGCTCTGGTGTTTCTGGAACTGCGGCTGTAGAAGCGTC 1014
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 CCGTTGCTTGGCGGTGGTGGTCCCTCTCCTCCTAACAAAAAAT----------------- 517
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 CTCCGAGACTTCGGTCTCAGCAGCTACGCCCTCCGTCGATTGTTCGGACTGTACACTTTC 1074
consensus_7291#3 ------------------------------------------------------------
consensus_7291#1 ------------------------------------------------------------
consensus_7291#2 ------------------------------------------------------------
consensus_7291#0 GGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG 1112
consensus_7291#3 --------------------------------------
consensus_7291#1 --------------------------------------
consensus_7291#2 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||