These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1231 fasta sequence [CCGGCGGCGATGAACGTCTTCCTCAACAGCCTGTCGCTGCAGGTGGTGGTGGCCCTGATCGTCGGCAGCCTGCTCTCGAGTACGTTTAAGTACCATGCGAAAATGTTTATCATCGTGCTGATGTCGTTTCTGGTACTGGTCGTCCCAATTCCGCTGTTCCTGTTCAAGCCCCGCTGGCCACTGAATGCGCTAATTCCAGGCATTGTGGCCTGTGCATTTATTCGCCTGTTCGGCGTGGAGTACGAAATCCGTGGCCAGGAGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAACCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACATCGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCTGGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACGGGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCGGCACGACAACGACACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTCGCAATCGATCATACAGCCGGTGATAGTGTCCAAGTACCACTTTCTCGACCACAAGCGGAAGCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCATGACCAAGGCGGACGTGACCGAGCTGACCGAGCGCTGTCAGCAGCTGATGCAGACCGAGTTCGATGCGCTCAGTGCGGAGGCGAAACAGTACTGCCATAACTGAGGGGCCTGGGCTGCAGTCGAGCAGAAGTGGGATGTATCGGGCAATGCGAAAAGCAATAATAGTCGTACTTGTTGTTGTT-----GTTGTTGCGGGGACCAGTGCTGCCGGTGCAGCTAGTAGTAGCGAGTAGCACACAGG--AAAAAAAACACTCACCAAAAACAAAAAAAATCATTTGCCTGAGTGAGCGAAAACAGCACGGGCACGGGAAAGCCGGCTTGGTGGAAGAAGAGAGAGAGGAAGCATTTTCGTGCGGTACTAAGCGAAGAGACAATCTGTGATCAAATCCTGGTACTATACTGGTCATCATATTCGTGCTTCGCGGCGATATTATCAATGGGAAGGATAAAACAAAACAAAAGAGAGAGAGGGAGAAAGCGGAAGTGGATGCTTCGGGATGGAACACCAAAAAAAA] [+] EMBL BM578961 [CCGGCGGCGATGAACGTCTTCCTCAACAGCCTGTCGCTGCAGGTGGTGGTGGCCCTGATCGTCGGCAGCCTGCTCTCGAGTACGTTTAAGTACCATGCGAAAATGTTTATCATCGTGCTGATGTCGTTTCTGGTACTGGTCGTCCCAATTCCGCTGTTCCTGTTCAAGCCCCGCTGGCCACTGAATGCGCTAATTCCAGGCATTGTGGCCTGTGCATTTATTCGCCTGTTCGGCGTGGAGTACGAAATCCGTGGCCAGGAGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAACCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACATCGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCTGGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACGGGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCGGCACGACAACGACACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTCGCAATCGATCATACAGCCG ] [+] EMBL BX611969 [ AGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAACCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACATCGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCTGGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACGGGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCGGCACGACAACGACACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTCGCAATCGATCATACAGCCGGTGATAGTGTCCAAGTACCACTTTCTCGACCACAAGCGGAAGCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCATGACCAAGGCGGACGTGACCGAGCTGACCGAGCGCTGTCAGCAGCTGATGCAGACCGAGTTCGATGCGCTCAGTGCGGAGGCGAAACAGTACTGCCATAACTGAGGGGCCTGGGCTGCAGTCGAGCAGAAGTGGGATGTATCGGGCAATGCGAAAAGCAATAATAGTCGTACTTGTTGTTGTT GTTGTTGCGGG ] [+] EMBL BX612055 [ AGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAACCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACATCGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCTGGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACGGGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCGGCACGACAACGACACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTCGCAATCGATCATACAGCCGGTGATAGTGTCCAAGTACCACTTTCTCGACCACAAGCGGAAGCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCATGACCAAGGCGGACGTGACCGAGCTGACCGAGCGCTGTCAGCAGCTGATGCAGACCGAGTTCGATGCGCTCAGTGCGGAGGCGAAACAGTACTGCCATAACTGAGGGGCCTGGGCTGCAGTCGAGCAGAAGTGGGATGTATCGGGCA ] [+] EMBL BM639057 [ ccgAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCTGGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACGGGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCGGCACGACAACGACACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTCGCAATCGATCATACAGCCGGTGATTGTGTCCAAGTACCACTTTCTCGACCACAAGCGAAAGCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCATGACCAAGGCGGACGTGACCGAGCTGACCGAGCGCTGCCAGCAGCTGATGCAGACCGAGTTCGATGCGCTCAGTGCGGAGGCGAAACAGTACTGCCATAACTGAGGAGCCTGGGCTGCAGTCGAGCAGAAGTGGGATGTATCGGGCAATGCGAAAAGCAATAATAGTCGTACTTGTTGTTGTTGGTTGGTTGTTGCGGGGACCAGTGCTGCCGGTGCAGCTAGTAGTAGCGAGTAGCACACAGGAAAAAAAAAACACTCACCAAAAAC AAAAAATCATTTGC ] [+] EMBL AGA285522 [ CAGTGCGGAGGCGAAACAGTACTGCCATAACTGAGGGGCCTGGGCTGCAGTCGAGCAGAAGTGGGATGTATCGGGAAATGCGAAAAGCAATAATAGTCGTACTTGTTGTTGTT GTTGTTGCGGGGACCAGTGCTGCCGGTGCAGCTAGTAGTAGCGAGTAGCACACAGG AAAAAAAACACTCACCAAAAACAAAAAAAATCATTTGCCTGAGTGAGCGAAAACAGCACGGGCACGGGAAAGCCGGCTTGGTGGAAGAAGAGAGAGAGGAAGCATTTTCGTGCGGTACTAAG ] [-] EMBL AGA284221 [ GGGCCTGGGCTGCAGTCGAGCAGAAGTGGGATGTATCGGGAAATGCGAAAAGCAATAATAGTCGTACTTGTTGTTGTT GTTGTTGCGGGGACCAGTGCTGCCGGTGCAGCTAGTAGTAGCGAGTAGCACACAGG AAAAAAAACACTCACCAAAAACAAAAAAAATCATTTGCCTGAGTGAGCGAAAACAGCACGGGCACGGGAAAGCCGGCTTGGTGGAAGAAGAGAGAGAGGAAGCATTTTCGTGCGGTACTAAGCGAAGAGACAATCTGTGATCAAATCCTGGTACTATACTGGTCATCATATTCGTGCTTCGCGGCGATATTATCAATGGGAAGGATAAAACAAAACAAAAGAGAGAGAGGGAGAAAGCGGAAGTGGATGCTTCGGGATGGAACACCAAAAAAAA] consensusID : consensus_7294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGATCCTTGTTTTTTTTGCAGAATTCCAGGCATTGTGGCCTGTGCATTTATTCGCCTGTTCGGCGTGGAGTACGAAATCCGTGGCCAGGAGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAACCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACATCGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCTGGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACGGGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCGGCACGACAACGACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTCGCAATCGATCATACAGCCGGTGATTGTGTCCAAGTACCACTTTCTCGACCACAAGCGAAAGCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCATGACCAAGGCGGACGTGAC] [+] EMBL BM624304 [CCGATCCTTGTTTTTTTTGCAGAATTCCAGGCATTGTGGCCTGTGCATTTATTCGCCTGTTCGGCGTGGAGTACGAAATCCGTGGCCAGGAGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAACCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACATCGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCTGGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACGGGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCGGCACGACAACGACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTCGCAATCGATCATACAGCCGGTGATTGTGTCCAAGTACCACTTTCTCGACCACAAGCGAAAGCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCATGACCAAGGCGGACGTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7294#0 CCGGCGGCGATGAACGTCTTCCTCAACAGCCTGTCGCTGCAGGTGGTGGTGGCCCTGATC 60 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 GTCGGCAGCCTGCTCTCGAGTACGTTTAAGTACCATGCGAAAATGTTTATCATCGTGCTG 120 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 ATGTCGTTTCTGGTACTGGTCGTCCCAATTCCGCTGTTCCTGTTCAAGCCCCGCTGGCCA 180 consensus_7294#1 --------------------------------------------------CCGATCCTTG 10 *** * consensus_7294#0 CTGAATGCGCT-AATTCCAGGCATTGTGGCCTGTGCATTTATTCGCCTGTTCGGCGTGGA 239 consensus_7294#1 TTTTTTTTGCAGAATTCCAGGCATTGTGGCCTGTGCATTTATTCGCCTGTTCGGCGTGGA 70 * * ** ************************************************ consensus_7294#0 GTACGAAATCCGTGGCCAGGAGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAA 299 consensus_7294#1 GTACGAAATCCGTGGCCAGGAGCACATTAACGTGCGGAACGGGGGCGTCGTGCTGCTGAA 130 ************************************************************ consensus_7294#0 CCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACAT 359 consensus_7294#1 CCACCAGAGTGCAATCGATATCGTGATGTTATCGCGATTGCTGCGCGAGTTCCGCAACAT 190 ************************************************************ consensus_7294#0 CGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCT 419 consensus_7294#1 CGTGCCGGTGGTGAAGAAGGAGCTGTTCTACATGCTCCCGTTCGGTATTGCCTCCTACCT 250 ************************************************************ consensus_7294#0 GGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACG 479 consensus_7294#1 GGTCGGGGTAGTGTTTATCGATCGCAAAAATACCGCCTCCGCGAAGGACGTCATGAAACG 310 ************************************************************ consensus_7294#0 GGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCG 539 consensus_7294#1 GGAAGCGGTCGCCATTACCAAAGACCATCTTAAACTGGCCATCTTCCCCGAGGGTACGCG 370 ************************************************************ consensus_7294#0 GCACGACAACGACACGCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTC 599 consensus_7294#1 GCACGACAACGAC--GCTGCTGCCGTTCAAGAAGGGCTCCTTCCACGTGGCGGTCGATTC 428 ************* ********************************************* consensus_7294#0 GCAATCGATCATACAGCCGGTGATAGTGTCCAAGTACCACTTTCTCGACCACAAGCGGAA 659 consensus_7294#1 GCAATCGATCATACAGCCGGTGATTGTGTCCAAGTACCACTTTCTCGACCACAAGCGAAA 488 ************************ ******************************** ** consensus_7294#0 GCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCAT 719 consensus_7294#1 GCGGTTCGGGCGGGGCCGGGTAATCATCAAGATTATGCCGGAAATCCCGACCAAGGGCAT 548 ************************************************************ consensus_7294#0 GACCAAGGCGGACGTGACCGAGCTGACCGAGCGCTGTCAGCAGCTGATGCAGACCGAGTT 779 consensus_7294#1 GACCAAGGCGGACGTGAC------------------------------------------ 566 ****************** consensus_7294#0 CGATGCGCTCAGTGCGGAGGCGAAACAGTACTGCCATAACTGAGGGGCCTGGGCTGCAGT 839 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 CGAGCAGAAGTGGGATGTATCGGGCAATGCGAAAAGCAATAATAGTCGTACTTGTTGTTG 899 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 TTGTTGTTGCGGGGACCAGTGCTGCCGGTGCAGCTAGTAGTAGCGAGTAGCACACAGGAA 959 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 AAAAAACACTCACCAAAAACAAAAAAAATCATTTGCCTGAGTGAGCGAAAACAGCACGGG 1019 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 CACGGGAAAGCCGGCTTGGTGGAAGAAGAGAGAGAGGAAGCATTTTCGTGCGGTACTAAG 1079 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 CGAAGAGACAATCTGTGATCAAATCCTGGTACTATACTGGTCATCATATTCGTGCTTCGC 1139 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 GGCGATATTATCAATGGGAAGGATAAAACAAAACAAAAGAGAGAGAGGGAGAAAGCGGAA 1199 consensus_7294#1 ------------------------------------------------------------ consensus_7294#0 GTGGATGCTTCGGGATGGAACACCAAAAAAAA 1231 consensus_7294#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||