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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence
[GCAGATCGCGCACGAGGTCAGTAAGCAAAGCGAGCAAACCGTGCCGCTGCTAATACCGTGCGTTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAATTCGTTCCGGCGGCGCGCAAGTAGTAAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAGCAGCCCAATCCACCACCTGCTGCTGCTGGTGACGGTCGGGCCGCGGCCGGCGGACGCCCACGGCCGGCTGATGGAACCGCCCGCCCGCAATGCGATGTGGCGCTTCGGCTTCCCGAACCCGGTCAACTACAACGACAACGAGCTGTTCTGCGGCGGGTACGCGGTCCAGTGGGAGCAGAACCAGGGCAACTGTGGCGTGTGCGGCGACGCGTACCATCTGCGGGCGCCCCGGCCGCACGAGGCCGGCGGCGAGTACGGCAAGGGCATCGTGTCGCGCCGGTACGTGGCCGGCCAGGAGCTGGAGGTCGAGATCGAGGCTGACCGCAACCATATGGGCCGGTTCGAGCTGTACCTCTGCCCGAACAACAACCCGCGGGCGGGAGGGCAACGCAGGGACTTGCTTTCCGATCGCTAACCCGGGTTCTAACTTGTTCCCGGGGACGGCGCGAGGTCCGGGTTCCTTCCATACCCGGCCCGACTCGAAGAAGCAAGGACCGGTTGTTTCCCCGGGGTTAACCCCCGGGGGGTTTNGCCAAGCCTTGGACACGGCTAGTCCTTACACGGTTTGAAAGCCTTGNGACACGCNCCAGATTGTGCGCTGTTTCATTCGCAANGTTGGGNACCCTACATTTTCACACCCGGGGGCAACAACAACTTTCTTTGNGGGACCCCCGGTTGGCGAACAAAACAGGGGGAAACCANAAGATCCGGGAC]
[+] EMBL BX467472 [GCAGATCGCGCACGAGGTCAGTAAGCAAAGCGAGCAAACCGTGCCGCTGCTAATACCGTGCGTTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAATTCGTTCCGGCGGCGCGCAAGTAGTAAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAGCAGCCCAATCCACCACCTGCTGCTGCTGGTGACGGTCGGGCCGCGGCCGGCGGACGCCCACGGCCGGCTGATGGAACCGCCCGCCCGCAATGCGATGTGGCGCTTCGGCTTCCCGAACCCGGTCAACTACAACGACAACGAGCTGTTCTGCGGCGGGTACGCGGTCCAGTGGGAGCAGAACCAGGGCAACTGTGGCGTGTGCGGCGACGCGTACCATCTGCGGGCGCCCCGGCCGCACGAGGCCGGCGGCGAGTACGGCAAGGGCATCGTGTCGCGCCGGTACGTGGCCGGCCAGGAGCTGGAGGTCGAGATCGAGGCTGACCGCAACCATATGGGCCGGTTCGAGCTGTACCTCTGCCCGAACAACAACCCGCGGGCGGGAGGGCAACGCAGGGACTTGCTTTCCGATCGCTAACCCGGGTTCTAACTTGTTCCCGGGGACGGCGCGAGGTCCGGGTTCCTTCCATACCCGGCCCGACTCGAAGAAGCAAGGACCGGTTGTTTCCCCGGGGTTAACCCCCGGGGGGTTTNGCCAAGCCTTGGACACGGCTAGTCCTTACACGGTTTGAAAGCCTTGNGACACGCNCCAGATTGTGCGCTGTTTCATTCGCAANGTTGGGNACCCTACATTTTCACACCCGGGGGCAACAACAACTTTCTTTGNGGGACCCCCGGTTGGCGAACAAAACAGGGGGAAACCANAAGATCCGGGAC]
consensusID : consensus_7314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 886 fasta sequence
[GAACTGGGCAGGATTTCCAAGACTTCACCGCGGGTGAACACCAAAATCCGGTACCGACCAGGCGGCGTTCATCATGCCTTATCTAAGCACGTTCTACTACAACGGTGCGCCATTGATAGGAATGGATCAGCTGAGCATTAAGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC-AACAGGGGGCGGCGGCGAC-GGCGGCGGCGGTTCCTGCGCCGACA-TCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCA-GGTGGCCTCGAAGATCCTGTCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAA]
[-] EMBL BM591654 [GAACTGGGCAGGATTTCCAAGACTTCACCGCGGGTGAACACCAAAATCCGGTACCGACCAGGCGGCGTTCATCATGCCTTATCTAAGCACGTTCTACTACAACGGTGCGCCATTGATAGGAATGGATCAGCTGAGCATTAAGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC AACAGGGGGCGGCGGCcgg ]
[+] EMBL BM591332 [ ccgCATTGATAGGAATGGATCAGCTGAGCATTAAGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGCAAACAGGGGGCGGCGGCGACGGGCGGCGGCGGTTCCTGCGCC ACATTCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCAGGGGGGCCTCGAAGATCCTGCCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGC ]
[+] EMBL BM590984 [ ccgGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC AACAGGGGGCGGCGGCGAC GGCGGCGGCGGTTCCTGCGCCGACA TCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCA GGTGGCCTCGAAGATCCTGTCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCG ]
[+] EMBL AGA285328 [ ATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTTGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGTCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC ATCAGGGGGCGGC ]
[-] EMBL AGA284033 [ TGCGATGAACTTTGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGTCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC AACAGGGGGCGGCGGCGAC GGCGGCGGCGGTTCCTGCGCCGACA TCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCA GGTGGCCTCGAAGATCCTGTCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAA]
consensusID : consensus_7314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[AAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAACAGCCCAATCCACCATCGACTGCTGCTGGCGGTGGGAAGAAGGGTAAGGCGGCCCAACAGCATGGGAGTGGTAGCGAGGGAGGCAAGGAAGGCAAAACGGTGAAGGTGGACTAGAAGCCTGCGGAAGCAACTGCACAGCCGGAAGAGGAATCAGCCGAACAGCAGCAACAACAGCCACAACCATAGGCCGCCTTATTGAAGGAAGTGAATAGAAGATCTCGGTCGAGTCAATCTCACCCTCAGCAAGCACCAGCGCAGCAGCAGCAGCAGCAGCTCGCAAAACAATCATCATCGCAGCAGGCGAA]
[+] EMBL AGA280944 [AAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAACAGCCCAATCCACCATCGACTGCTGCTGGCGGTGGGAAGAAGGGTAAGGCGGCCCAACAGCATGGGAGTGGTAGCGAGGGAGGCAAGGAAGGCAAAACGGTGAAGGTGGACTAGAAGCCTGCGGAAGCAACTGCACAGCCGGAAGAGGAATCAGCCGAACAGCAGCAACAACAGCCACAACCATAGGCCGCCTTATTGAAGGAAGTGAATAGAAGATCTCGGTCGAGTCAATCTCACCCTCAGCAAGCACCAGCGCAGCAGCAGCAGCAGCAGCTCGCAAAACAATCATCATCGCAGCAGGCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7314#0 GCAGATCGCGCACGAGGTCAGTAAGCAAAGCGAGCAAACCGTGCCGCTGCTAATACCGTG 60
consensus_7314#1 ------------------------------------------------------------
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 CGTTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCA 120
consensus_7314#1 ----GAACTGGGCAG-GATTTCCAAGACTT-CACCGC----GGGTGAACACCAAAATCCG 50
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 ATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACT 180
consensus_7314#1 GTACCGACCAGGCGG--CGTTCATCA--TGCCTTATCTAAGCACGTTCTACTACAACGGT 106
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 TAAACCCCGACGTGCCGGAATTCGTTCCGGCGGCGCGCAAGTAGTAAATAAGCCACCGAA 240
consensus_7314#1 GCGCCATTGATAGGAATGGATCAGCTG-AGCATTAAGGAGTGTATTAAAAAGCAAATTGA 165
consensus_7314#2 ---------------------------------------------AAATAAGCCACCGAA 15
** **** * *
consensus_7314#0 AAGTAAAGCGAACGAGAAAAAGCAGCCCAATCCACCACCTGCTGCTGCTGGTGACGGTCG 300
consensus_7314#1 ATATTACTTTAGCGAGGAAAA----TCTAAATCGTGATTT-CTACCTGCGGCGAAAAATG 220
consensus_7314#2 AAGTAAAGCGAACGAGAAAAAACAGCCCAATCCACCATCGACTGCTGCTGGCGGTGGGAA 75
* * * * **** **** * ** * * ** * ** *
consensus_7314#0 GGCCGCGGCCGGCGGACGCCCACGGCCGGCTGATGGAACCGCCCGCCCGCAATGCGATGT 360
consensus_7314#1 GACC-CGGAGGGCTTCCTTCCG-GTTACGCTTATCGCATCGTTCCATCG-AGTGCAAG-- 275
consensus_7314#2 GA----AGGGTAAGGCGGCCCA---ACAGC--ATGGGAGTGGTAGCGAGGGAGGCAAGGA 126
* * ** ** ** * * * * ** *
consensus_7314#0 -GGCGCTTCGGCTTCCCGAACCCGGTCAACTACAACGACAACGAGCTGTT----CTGCGG 415
consensus_7314#1 -CGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAG 334
consensus_7314#2 AGGCAAAACGGTGAAGGTGGACTAGAAGCCTGCGGAAGCAACTGCACAGC----CGGAAG 182
** ** * *** * * *
consensus_7314#0 CGGGTACGCGGTCCAGTGGGAGCAGAACCAGG-GCAACTGTGGCGTGTGCGGCGACGCGT 474
consensus_7314#1 CTGAT-CGAAGACTACAAGGTGCGCACGCGCG-TCAACCCCACGATGT--GGCCAATCG- 389
consensus_7314#2 AGGAA--TCAGCCGAACAGCAGCAACAACAGCCACAACCATAGGCCGCCTTATTGAAGGA 240
* * * * * ** * **** * *
consensus_7314#0 ACCATCTGCGGGCGCCCCGGCCGCACGAGGCCGGCGGCGAG-TACGGCAAGGGCATCGTG 533
consensus_7314#1 ATCACTCG-----GTCACGATCGTGAATGGT--GCGATGAACTTCGGAGTTACTTTCGCC 442
consensus_7314#2 AGTGAATAGAAG-ATCTCGGTCGAGTCAATC------TCACCCTCAGCAAGCAC-CAGCG 292
* * ** ** * * * *
consensus_7314#0 TCGCGCCGGTACGTGGCCGGCCAGGAGCTGGAGGTCGAGATCGAGGCTGACCGCAACCAT 593
consensus_7314#1 GACCAGCAGCA-GCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGT-GCAGGGAG 500
consensus_7314#2 CAGCAGCAGCA-GCAGCAGCTCGCAAAACAATCATCATCGCAGCAGGCGAA--------- 342
* * * * * ** * * * * * * *
consensus_7314#0 ATGGGCCGGTTCGAGCTGTACCTCTGCCCGAACAACAAC--CCGCGGGCGGGAG-GGCAA 650
consensus_7314#1 AGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGCAACAGGGGGCGGCGG 560
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 CGCAGGGACTTGCTTTCCGATCGCTAACCCGGGTTCTAACTTGTTCCCGGGGACGGCGCG 710
consensus_7314#1 CGACGGCGGCGGCGGTTCCTGCGCCGACATCGGTTCCG----GTCGCTGGCGACGGAGCC 616
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 AGGTCCGGGTTCCTTCCATACCCG--GCCCGACTCGAAGAAGCAAGGACCGGTTGTTTCC 768
consensus_7314#1 GATGTCGCAGCCGTGCCGCAGCTGCAGGTGGCCTCGAAGATCC---TGTCTAGTATTCCA 673
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 CCGGGGTTAACCCCCGGGGGGTTTNGCCAAGCCTTGGACACGGCTAGT----CCTTACAC 824
consensus_7314#1 CCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGC-C 732
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 GGTTTGAAAGCCTTGNG---ACACGCNCCAGATTGTG---CGCTGTTTCATTCGCAANGT 878
consensus_7314#1 GCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGT 792
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 TGGGNACCCTACATTTTCACACCCGGGGGCAACAACAACTTTCTTTGNGGGACCCCCGGT 938
consensus_7314#1 AGCGCAGAAGACCAATGCTGCCCCTGCCGCT-CAGCCGCCGCCCGCGGAGAGTGGGAAAT 851
consensus_7314#2 ------------------------------------------------------------
consensus_7314#0 TGGCGAACAAAACAGGGGGAAACCANAAGATCCGGGAC 976
consensus_7314#1 CGGCAGA--AGAAAACTTAAACCCCGACGTGCCGGAA- 886
consensus_7314#2 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||