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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1124 fasta sequence
[CCGGGTGACGGGACCGACTGCGGCCATCCTCAGCTGGAACCCGGTGACGCCCGAATCGCTGCGCGGCCACTTCAAGGGCTACAAGATCCAAACCTGGACCGAGGCGGACGGCGAGGAGAACCTGCGCGAGATACTGATCACCGCCGACTCGAAGCAGGCGCTCGTGACGGACTTCGTGCCGGACGCGACCAACTACGCCCGCATCCTCGCGTACAACGGCCGGTACAACGGGCCGGCCAGCACGACGCTGTCGTTCGACACGCCCG-GGGCGTGCCGAACACGATCCAGGCGCTCGAGGCGTACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGA-GGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGG-AGGCGAAA-CTGGGCCGCCTGAAGCCGGCTGCCAAGTA-TCGTATTCACGTCGTCGCCACCACCAAGGCTGGCGAAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACGTACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGGTGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCAAGGACGAATCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT-GGTTCATCGGCATGATGCT--GGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCTTTGGACAATAAAAGCCAGGGCCGACAATCGCTGAACTC]
[+] EMBL BM605648 [CCGGGTGACGGGACCGACTGCGGCCATCCTCAGCTGGAACCCGGTGACGCCCGAATCGCTGCGCGGCCACTTCAAGGGCTACAAGATCCAAACCTGGACCGAGGCGGACGGCGAGGAGAACCTGCGCGAGATACTGATCACCGCCGACTCGAAGCAGGCGCTCGTGACGGACTTCGTGCCGGACGCGACCAACTACGCCCGCATCCTCGCGTACAACGGCCGGTACAACGGGCCGGCCAGCACGACGCTGTCGTTCGACACGCCCGAGGGCGTGCCGAACACGATCCAGGCGCTCGAGGCGTACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGAGGGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGGAAGGCGAAAGCTGGGCCGCCTGAAGCCGGCTGCCAAGTATTCGTATTCACGTCGTCGCCACCACCAGGG ]
[+] EMBL BM631547 [ ccACGCGTCCG GGGCGTGCCGAACACGATCCAGGCGCTCGAGGCGTACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGA GGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGG AGGCGAAA CTGGGCCGCCTGAAGCCGGCTGCCAAGTA TCGTATTCACGTCGTCGCCACCACCAAGGCTGGCGAAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACGTACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGGTGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCAAGGACGAATCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCTGGGTTCATCGGCATGATGCTTGGGCG ]
[+] EMBL BM601113 [ ccgCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGA GGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGG AGGCGAAG CTGGGCCGCCTGAAGCCGGCTGCCAAGTA TCGTATTCACGTCGTCGCCACCACCAAGGCTGGCGAAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACGTACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGGTGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCAAGGACGAGTCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT GGTTCATCGGCATGATGCT GGCGATCGCGTTCCTCATACT ]
[+] EMBL AGA282565 [ AGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT GGTTCATCGGCATGATGCT GGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCTTTGGACAATAAAAGCCAGGGCCGACAATCGCTGAACTC]
consensusID : consensus_7319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1050 fasta sequence
[CCGGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCTGGTTCATCGGCATGATGCTGGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCAAGGTATGAATGAGGACGGTTCCTTCATTGGGCAGTACGGCCGGAAGGGTGGCAAAAACGCGGATAGCAATTCGCAGGCGTTCGCAACACTAGTTTAGTGAGGGATGCGTGTGTGTGGTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGTCCAAACCGCCTTTCTAGCGTGTATACGTACGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCAACAGTAGCGTACAGATTGTAGAGTAAATGTGGATTGGAAACGAAAGCCGAATTCATGTTAGCGATACGAAAGAAGAATGTATTAGGATTAAAAAAAAAGGTAACAGGAACGGCGAGAGTTGGGAAAAGGGGGAGTATGATTAAGGGACAGTTACAGGTCAAAAGCCCCGTTCAAAAAGGCTAATTTGAAAATTTTGTACCGAAATGATGATGTTCTCCAACATCGATTCTCTGTAATTATGGATTGAGTTTCAAAGCTCACTAAAACAAACTTATAAAATCCACAACCGCTGCTCTCCTTTCCCACCTCTCCCCACACATCAACTCTCCCTCCAACTGCGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAAAGCCACTACACTAGCTAGTAAGCGATCGAAGCGATGAAAAATGGCCTCAATAAAAACGGGCTGGGGTAGAATATTGGTGTGTTAGTCCGGGAACCGCACGATGATACCCCTTTTTTATCTCTCCGGCCACCTCTCGGCCGGCGGATGGGAAGGAAAAAAAA]
[+] EMBL BM605860 [CCGGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCTGGTTCATCGGCATGATGCTGGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCAAGGTATGAATGAGGACGGTTCCTTCATTGGGCAGTACGGCCGGAAGGGTGGCAAAAACGCGGATAGCAATTCGCAGGCGTTCGCAACACTAGTTTAGTGAGGGATGCGTGTGTGTGGTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGTCCAAACCGCCTTTCTAGCGTGTATACGTACGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCAACAGTAGCGTACAGAT ]
[+] EMBL BM601571 [ ccgGGTTCCTTCATTGGGCAGTACGGCCGGAAGGGTGGCAAAAACGCGGATAGCAATTCGCAGGCGTTCGCAACACTAGTTTAGTGAGGGATGCGTGTGTGTGGTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGTCCAAACCGCCTTTCTAGCGTGTATACGTACGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCAACAGTAGCGTACAGATTGTAGAGTAAATGTGGATTGGAAACGAAAGCCGAATTCATGTTAGCGATACGAAAGAAGAATGTATTAGGATTAAAAAAAAAGGTAACAGGAACGGCGAGAGTTGGGAAAAGGGGGAGTATGATTAAGGGACAGTTACAGGTCAAAAGCCCCGTTCAAAAAGGCTAATTTGAAAATTTTGTACCGAAATGATGATGTTCTCCAACATCGATTCTCTGTAATTATGGATTGAGTTTCAAAGCTCACTAAAACAAACTTATAAAATCCACAACCGCTGCTCTCCTTTCCCACCTCTCCCCACACATCAACTCTCCCTCCAACTGCGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAAAGCCACTACACTAGCTAGTAAGCGATCGAAGCGATGA ]
[-] EMBL AGA280936 [ CCGCTGCTCTCCTATCCCACCTATCCCCACACATCAACTCTCCCACCAACTGAGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAAAGCCACTACCCTAGCTAGTAAGAGATCGAAGCGATGAAAAATGGCCTCAATAAAAACGGGCTGGGGTAGAATATTGGTGTGTTAGTCCGGGAACCGCACGATGATACCCCTTTTTTATCTCTCCGGCCACCTCTCGGCCGGCGGATGGGAAGGAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7319#0 CCGGGTGACGGGACCGACTGCGGCCATCCTCAGCTGGAACCCGGTGACGCCCGAA-TCGC 59
consensus_7319#1 --------CCGGTCGGTCGACGGCGAATATCAGACGGAATC-GGCCACGCAGGAAGTCGA 51
* ** * * * **** * **** **** * ** **** *** ***
consensus_7319#0 TGCGCGGCCACTTCAAGGGCTAC---AAGATCCAAACCTGGACCGAGGCGGACGGCGAGG 116
consensus_7319#1 CAC-CTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT 110
* * * * ** ** *** * *** * * * * * *** * **
consensus_7319#0 AGAACCTGCGCGAGATACTGATCACCGCCGACTCGAAGCAGGCGCTCGTGACGGACTTCG 176
consensus_7319#1 GGTTCATCGGCATGATGCTGGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCA 170
* * * ** *** *** * *** * * * ** *** * * ** *
consensus_7319#0 TGCCGGACGCGACCAACTACGCCCGCATCCTCGCGTACAACGGCCGGTACAACGGGCCGG 236
consensus_7319#1 TCGTGAA-GCG--CAACCGGGGCGGCAA------ATACGACGTGCACGATCGGGAGCTGG 221
* * * *** **** * * *** *** *** * * * ** **
consensus_7319#0 CCAGCACGACGCTGTCGTTCGACACGCCCGGGGCGTGCCGAACACGATCCAGGCGCTCGA 296
consensus_7319#1 CCAACG-GCCGCAACGACTACAC-CGAGGAGGGCG-GCTTCCCGGAGTACTCGCAACCAA 278
*** * * *** * ** ** ***** ** * * * ** * *
consensus_7319#0 GGCGT--ACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAAC-C 353
consensus_7319#1 GGTATGAATGAGGACGGTTCCTTCATTGGGCAGTACGGCCGGAAGGG-TGGCAAAAACGC 337
** * * * *** ** * * * * ** ***** ** *** *
consensus_7319#0 GAACGGCAAGCTCACCGGCTACCGGATCTACTACGAGGAGGTGAAGGGCACGACGGTGGG 413
consensus_7319#1 GGATAGCAA-TTCGCAGGCGTTCGCAAC-ACTA--GTTTAGTGAGGGATGCGTGTGTGTG 393
* * **** ** * *** ** * * **** **** ** ** *** *
consensus_7319#0 CCCGCGGATGGAGCGCGAACCGC-ACATCTCCGATCCGGCCGTGCTGGAGGCGAAACTGG 472
consensus_7319#1 GTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGT--CCAA 451
*** ** ** * * * * ** * *
consensus_7319#0 GCCGCCTGAAGCCGGCTGCCAAGTATCGTATTCACGTCGTCGCCACCACCAAGGCTGGCG 532
consensus_7319#1 ACCGCCTTTCTAGCGTGTATACGTA-CGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCA 510
****** * * *** ** * ** * ** * * **
consensus_7319#0 AAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACG 592
consensus_7319#1 ACAGT---AGCGTACAGATTGTAGAGTAAATGTGGATTGGAAACGAAAGCCGAATTCATG 567
* ** * * * ** * * * * * ** * * * * *
consensus_7319#0 TACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGG 652
consensus_7319#1 TTAGCGATACGAAAGAAGAATGTATTAGGATTAAAAAAAAAGGTAACAGGAACGGCGAGA 627
* * * * *** ** ** * ** ** * * * *
consensus_7319#0 TGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCA 712
consensus_7319#1 GTTGGGAAAAGG-----GGGAGTATGATTAAGGGACAGTTACAGGTCAAAAGCCCCGTTC 682
*** * ** ** * * * * ** ** * ***** ** ***
consensus_7319#0 AGGACGAATCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGC 772
consensus_7319#1 AAAAAGGCT--AATTTGAAAATT------------TTGTACCGAAATGA--TGATGTTCT 726
* * * * * * * * * ***** *** * **** *
consensus_7319#0 ACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATC 832
consensus_7319#1 CCAACATCGATTCT--CTGTAATTATGGATTGAGTTTCAAAGCTCACTAAAACAAACTT- 783
* **** * * * * ** * ** * ** * * * * ** *
consensus_7319#0 AGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGC 892
consensus_7319#1 --ATAAAATCCACAACCGCTGCTCTCCTTTCCCACCTCTCCCCACACATC---AACTCTC 838
* **** * ** * ** ** ** * ** * * ** *
consensus_7319#0 CGGGCGATAACATTGCGACGGCCGGCTGGTTCATCGGCATGATGCTGGCGATCGCGTTCC 952
consensus_7319#1 CCTCCAACTGCGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAA----AGCCA 894
* * * * * * * * * ** * * * *
consensus_7319#0 TCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACG 1012
consensus_7319#1 CTACACTA--GCTAGTAAGCGATCGAA--GCGATGAAAAATGGCCTCAATAAAAACGGGC 950
* *** *** * * * * * * ** * ** * * *** ***
consensus_7319#0 TGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGG 1072
consensus_7319#1 TGG--GGTAGAATATTGGTGTGTTAGTCCGGGAACCGCAC-GATGATACCCCTTTTTTAT 1007
** * * * *** * ** *** ** ** * **
consensus_7319#0 AGTACTCGCAACCTTT-GGACAATAAAAGCCAGGGCCGACAATCGCTGAACTC 1124
consensus_7319#1 CTCTCCGGCCACCTCTCGGCCGGCGGATGGGAAGGAAAAAAAA---------- 1050
* ** **** * ** * * * * ** * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||