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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1573 fasta sequence
[AAACCGGCCGTCGATGTCGTCTTCATCCATGGACTTTTGGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGTGATACCGAAACGAAAGAGCTAATTGAAGCACTGCAACAGGAGGAACCGCTCGGTGCCGACTGGACCGTCGTCTACCCGGACGTCCCCCTAGCAGCGGACGAGGATGCGCACACCGGCAAGCCCACCGCCACCGCAGACGGTGCCACCTGCAGCGTGTCGGGCGACCAGTGGCTACAGGAACCGCTCGACTCGACGCAGCGATCGTTCTGCTGGCCGATGGAATGGCTCCCAAAAGACTTCCCCAGCATACGCGTGCTCGGCCTGGACTACGAGTCCTCCCTGTCGCAGTGGTCGGCGACCGGCTGCCCGTGCGAGAAGTACGACGGCAAGCTGCAGAAGCGAGCGGCCGAATTCCTCGAAAAGCTGGCCACCTCGGACGTCGGGCAGGATCGGCCCATCATCTGGGTCGGCCACTCCATGGGCGGGCTGCTGATCAAGAGCATCATGGTGCAGGCGCTCGAGAGTCCCAACCCCAAAGTGCGCCGGTTGGCGGAAAACTCGCGCGTCGTCATGTTCCTCGGTACGCCCCACCGCGGCAGTGGTGTGGCGAAACTGAAGCAGCACACATCCGCCCTCGTGTGGCCCTCGGTCGAGGTGCAGGAGCTGGAGGAAAACTCCACCCATCTGCTGCATCTAAACAAAAGCTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAGGGCAAGCCAACCATGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCCGCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGGGTTAGGATCGTGTTGATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTTTTGCCTCGCAACACACAGAGCAACACCGCACACCACAGGGTTTAGTTTTGTAGTTATTTA-TTTTTTTGTTACACATAGGG--TTTTTTTTAATTTGCAACTGGTGTTACCCCCCTCCCTCGCTTGCGAAGAAGCATTACGAATTTGACGG]
[+] EMBL AGA281581 [AAACCGGCCGTCGATGTCGTCTTCATCCATGGACTTTTGGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGTGATACCGAAACGAAAGAGCTAATTGAAGCACTGCAACAGGAGGAACCGCTCGGTGCCGACTGGACCGTCGTCTACCCGGACGTCCCCCTAGCAGCGGACGAGGATGCGCACACCGGCAAGCCCACCGCCACCGCAGACGGTGCCACCTGCAGCGTGTCGGGCGACCAGTGGCTACAGGAACCGCTCGACTCGACGCAGCGATCGTTCTGCTGGCCGATGGAATGGCTCCCAAAAGACTTCCCCAGCATACGCGTGCTCGGCCTGGACTACGAGTCCTCCCTGTCGCAGTGGTCGGCGACCGGCTGCCCGTGCGAGAAGTACGACGGCAAGCTGCAGAAGCGAGCGGCCGAATTCCTCGAAAAGCTGGCCACCTCGGACGTCGGGCAGGATCGGCCCATCATCTGGGTCGGCCACTCCATGGGCGGGCTGCTGATCAAGAGCATCATGGTGCAGGCGCTCGAGAGTCCCAACCCCAAAGTGCGCCGGTTGGCGGAAAACTCGCGCGTCGTCATGTTCCTCGGTACGCCCCACCGCGGCAGTGGTGTGGCGAAACTGAAGCAGCACACATCCGCCCTCGTGTGGCCCTCGGTCGAGGTGCAGGAGCTGGAGGAAAACTCCACCCATCTGCTGCATCTAAACAAAAGCTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGAT ]
[+] EMBL BX619011 [ AACAAAAGCTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAGGGCAAGCCAACCATGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCCGCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCATCAAACCGATg ]
[+] EMBL BX617508 [ CTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAGGGCAAGCCAACCGTGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCCGCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGGGTTAGGATCGTGTTGATTTAAGGGTGCTCTCCCGTGTTTGGGTGGTCGT ]
[+] EMBL BM656107 [ ccgCGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCGGCCCGGATCGATGCCGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATTTAAATCCAGACATGGCACAAACACACACA CACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGAGTTAGGATCTTGTT ATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTTTTGCCTCGCAACACACAGAGCAACACCGCACACCACAGGGTTTAGTTTTGTAGTTATTTA TTTTTTTGTTACACATAGGGTTTTTTTTTTAATTTGCAACTGGTGTTACCCCCCTCCCTCGCTTGCGAAGAAGCATTACGAATTTGACGG]
[+] EMBL BX618595 [ CAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCGGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGA ]
[-] EMBL AGA283174 [ ATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGGGTTAGGATCGTGTTGATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTTTTGCCTCGCAACACACAGAGCAACACCGCACACCGCAGGGTTTAGTTTTGTAGTTATTTATTTTTTTTGTTACACATAGGG TTTTTTTTAATTTGCAACTGTTGTTACCCCCCTCCCTNGCTTGCGAAGAAGCATTAC ]
consensusID : consensus_7329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTCTATATTCTTTTTTCCCTCTCCAGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGGTAAGAAACACAAAGACGTTCATTTAGTGTCTACATCGTCGCCTTCCTTCACCTCGCTCACCAACGACATTGCACCGACGGACGTCGACATACCGCCGAACGGGACAGGACAGCGAACCGAGGTCGCTTACGCTGCTCGCACGTACAAAAGCTGGTCCGCTAGAAAGTCGTCCTTCGAGGAGGAGGACCACGCCCGGACAGCTGAAGGTAAGCGTAAGCGAAACGTGCTACGCTTTTCCGTTGTTTTTACACTTGCGCCCTTTTCACCTCCCCTTTCGGTCGCTCATGTCACTGCCACACCACACCTCATCTCCTGTCCCCGGTACGCAGGGGGAATCGGATGAGATAAAACATACAAACAAGTTGTAGAAATTCTTCATCCTGCGCGCTACGTTGACGATCGTGCTCACTCAGTTTCAATGTTGCAAAACATTACGATGTGCTCTAATTGCAATTTCTCTTTCCTTCCATTTCCAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGT]
[+] EMBL BM597726 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTATATTCTTTTTTCCCTCTCCAGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGGTAAGAAACACAAAGACGTTCATTTAGTGTCTACATCGTCGCCTTCCTTCACCTCGCTCACCAACGACATTGCACCGACGGACGTCGACATACCGCCGAACGGGACAGGACAGCGAACCGAGGTCGCTTACGCTGCTCGCACGTACAAAAGCTGGTCCGCTAGAAAGTCGTCCTTCGAGGAGGAGGACCACGCCCGGACAGCTGAAGGTAAGCGTAAGCGAAACGTGCTACGCTTTTCCGTTGTTTTTACACTTGCGCCCTTTTCACCTCCCCTTTCGGTCGCTCATGTCACTGCCACACCACACCTCATCTCCTGTCCCCGGTACGCAGGGGGAATCGGATGAGATAAAACATACAAACAAGTTGTAGAAATTCTTCATCCTGCGCGCTACGTTGACGATCGTGCTCACTCAGTTTCAATGTTGCAAAACATTACGATGTGCTCTAATTGCAATTTCTCTTTCCTTCCATTTCCAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7329#0 -------------AAACCGGCCGTCGATGTCGTCTTCATCCATGGACTTTTGGGGGGTGT 47
consensus_7329#1 CCGCCCACGCGTCCGCCCACGCGTCCGCTCTATATTCTTTTTTCCCTCTCCAGGGGGTGT 60
** **** * *** * * * ********
consensus_7329#0 ATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGAGGGCAT 107
consensus_7329#1 ATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGG------ 114
*****************************************************
consensus_7329#0 TACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGA 167
consensus_7329#1 TAAGAAACACAAAGACGTTCATTTAGTGTCTACATCGTCGCCT---------TCCTTCAC 165
** **** ** * * ** ** *** * **
consensus_7329#0 CGCATCGATCAGTGATACCGAAACGAAAGAGCTAATTGAAGCACTGCAACAGGAGGAACC 227
consensus_7329#1 CTCGCTCACCAACGACATTGCACCGACGGAC---GTCGACATACCGC--CGAACGGGACA 220
* * * ** ** * * * *** ** * ** ** ** * ** **
consensus_7329#0 GCTCGGTGCCGACTGGACCGTCGTCTACCCGGACGTCCCCCTAGCAGCGGACGAGGATGC 287
consensus_7329#1 GGACAGCG--AACCGAG--GTCGCTTACGCTG--------CTCGCA-CGTACAAAAGCTG 267
* * * * ** * **** *** * * ** *** ** ** *
consensus_7329#0 GCACACCGGCAAGCCCACCGCCACCGCAGACGGTGCCACCTGCAGCGTGTCGGGCGACCA 347
consensus_7329#1 GTCCGCTAGAAAGTCGTCCTTCGAGGAGGAGGACCACGCCCGGACAGCTGAAGGTAAGCG 327
* * * * *** * ** * * ** * * ** * * * ** * *
consensus_7329#0 GTGGCTACAGGAACCGCTCGACTCGACGCAGCGATCGTTCTGCTGGCCGATGGAATGGCT 407
consensus_7329#1 -----TAAGCGAAACGTGCTACGCTTTTCCGTTGTTTTTACACTTGC---------GCCC 373
** *** ** * ** * * * * ** ** ** * *
consensus_7329#0 CCCAAAAGACTTCCCCAGCATACGCGTGCTCGGCCTGGACTACGAGTCCTC-CCTGTCGC 466
consensus_7329#1 TTTTCACCTCCCCTTTCGGTCGCTCATGTCACTGCCACACCACACCTCATCTCCTGTCCC 433
* * * * * * ** * ** ** ** ** ****** *
consensus_7329#0 AGTGGTCGGCGACCGGCTGCCCGTGCGA-GAAGTACGACGGCAAGCTGCAGAAGCGAGCG 525
consensus_7329#1 --CGGTACGCAGGGGGAATCGGATGAGATAAAACATACAAACAAGTTGTAGAA------- 484
*** ** ** * ** ** ** * **** ** ****
consensus_7329#0 GCCGAATTCCTCGAAAAGCTGGCCACCTCGGACGTCGGGCAGGATCGGCCCATCATCTGG 585
consensus_7329#1 -----ATTCTTCATCCTGCGCGCTACGTTGACGATCGTGCTCACTCAGTT--TCAATGTT 537
**** ** ** ** ** * * *** ** ** * ***
consensus_7329#0 GTCGGCCACTCCATGGGCGGGCTGCTGATCAAGAGCATCATGGTGCAGGCGCTCGAGAGT 645
consensus_7329#1 GCAAAACATTAC---GATGTGCT-CTAAT--------------TGCAATTTCTCTTTCCT 579
* ** * * * * *** ** ** **** *** *
consensus_7329#0 CCCAACCCCAAAGTGCGCCGGTTGGCGGAAAACTCGCGCGTCGTCATGTTCCTCGGTACG 705
consensus_7329#1 TCCATTTCCAGAGGGCATTACCGCGTACAAGGATGAGCTGCTA--ACGTTCCAGGAATCG 637
*** *** ** ** * ** * * * ***** * **
consensus_7329#0 CCCCACCGCGGCAGTGGTGTGGCGAAACTGAAGCAGCACACATCCGCCCTCGTGTGGCCC 765
consensus_7329#1 ACCAACAGTGG--ACCCCGGGACGCATC--GATCAGT----------------------- 670
** ** * ** * * ** * * * ***
consensus_7329#0 TCGGTCGAGGTGCAGGAGCTGGAGGAAAACTCCACCCATCTGCTGCATCTAAACAAAAGC 825
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 TTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAG 885
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 GGCAAGCCAACCATGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCC 945
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 GCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAA 1005
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 CCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATC 1065
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 CGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCC 1125
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 GCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCG 1185
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 TCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTT 1245
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 ATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCT 1305
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 CAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGAT 1365
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 GAACTTAGGGTTAGGATCGTGTTGATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTT 1425
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 TTGCCTCGCAACACACAGAGCAACACCGCACACCACAGGGTTTAGTTTTGTAGTTATTTA 1485
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 TTTTTTTGTTACACATAGGGTTTTTTTTAATTTGCAACTGGTGTTACCCCCCTCCCTCGC 1545
consensus_7329#1 ------------------------------------------------------------
consensus_7329#0 TTGCGAAGAAGCATTACGAATTTGACGG 1573
consensus_7329#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||