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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1006 fasta sequence
[AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACAC-C-ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCA-TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGCGCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGGAAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAGACGC-GGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACTCAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA]
[+] EMBL CNS08RPB [AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACAC C ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCA TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGCGCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGGAAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAGACGC GGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACTCAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA]
[+] EMBL CNS09996 [ TCCTTTCGATTTCACCAAAACGCAAGATGTTGG CCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCTTTAGTGCAGAGCCCACACATACACACACACGACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCATTCGGTTTGTGCGGATCACGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTTGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTACTGTGGTTCGTCGTGCGCCGCA GATAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGC ]
[-] EMBL CNS09997 [ AAGGATAGCGGCTAATTTTTGGAACACGCGTTCCAAGTAGGTAGTAAGCGAAGAC GGGGAAGCCG AGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAAACGCGGGGGGGAAGTTGGTTGATTTGTGTGTTTGTGACCCCCGGCTAGACACACTCAAGCTTTACAAGTAA ]
consensusID : consensus_7334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 844 fasta sequence
[GGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACCACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGC]
[+] EMBL BX608085 [GGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACCACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTT ]
[+] EMBL BX616888 [ AACACCCGGATAGCATTCCGCCCGGGGTCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGC]
[+] EMBL BM639397 [ ccgCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGG ]
[-] EMBL CNS08RPC [ GTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7334#0 AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCC 60
consensus_7334#1 -----------------------------------------GGCCCACCACGGCGGGCCC 19
*******************
consensus_7334#0 GTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACC 120
consensus_7334#1 GTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACC 79
************************************************************
consensus_7334#0 ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAA-CGCA 179
consensus_7334#1 ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCA 139
******************************************************* ****
consensus_7334#0 TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCC 239
consensus_7334#1 TCGGTTTGT-------------GCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCC 186
********* **************************************
consensus_7334#0 GCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGC 299
consensus_7334#1 GCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGC 246
************************************************************
consensus_7334#0 TGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACA 359
consensus_7334#1 TGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACA 306
************************************************************
consensus_7334#0 CGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGG 419
consensus_7334#1 CGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGG 366
************************************************************
consensus_7334#0 TTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGC 479
consensus_7334#1 TCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGC 426
* *************************************** ******************
consensus_7334#0 GCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATA 539
consensus_7334#1 GCCGCACGAA-GCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATA 485
********** *************************************************
consensus_7334#0 TGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTC 599
consensus_7334#1 TGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTC 545
************************************************************
consensus_7334#0 TGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAG 659
consensus_7334#1 TGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAG 605
************************************************************
consensus_7334#0 ATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCAC 719
consensus_7334#1 ATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCAC 665
************************************************************
consensus_7334#0 GTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAG 779
consensus_7334#1 GTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAG 725
***************** ******************************************
consensus_7334#0 AAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGG 839
consensus_7334#1 AAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGG- 784
******************* *************** ***********************
consensus_7334#0 AAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGG 899
consensus_7334#1 AAGCCG-AGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGG 843
****** * **************************************************
consensus_7334#0 CGGGAGACGCGGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACT 959
consensus_7334#1 C----------------------------------------------------------- 844
*
consensus_7334#0 CAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA 1006
consensus_7334#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||