These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1138 fasta sequence [CCGGGCACGGTAGTGCTGCAAAATTTTGTGCAATCATCTACAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAATTGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCGCATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGTGGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAA-TTGGTGCTGGATCACATGAACGAAGGCAGTGGTAATGTGACGATCGTGGATAACTTGGATGAGGCGAAGGTGAAACAATATTTGTTGAATTTACGTTAAAGTATAGTTCGTTAGAATTGATATCAAATACAAA] [+] EMBL BM652282 [CCGGGCACGGTAGTGCTGCAAAATTTTGTGCAATCATCTACAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACACGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCA ] [+] EMBL BM645695 [ ccgGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACACGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCA ] [+] EMBL BX608181 [ GATATCTTTGATTTTGTCAAGGTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCCAAACAAGAAGTAGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGTACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTAGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTG ] [+] EMBL BX608502 [ CGATGCCCTTCAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACTCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACTCGCTGATAAACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCTTTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACA CACAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAATTGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCGCATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGTGGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAA TTGGTGCTGGATCACATGAACGAAGGCAGTGGTAATGTGACGATCGTGGATAACTTGGATGAGGCGAAGGTGAAACAATATTTGTTGAATTTACGTTAAAGTATAGTTCGTTAGAATTGATATCAAATACAAA] [+] EMBL BX616289 [ CTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACTCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACTCGCTGATAAACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCTTTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACA CACAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAATTGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCGCATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGTGGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAATTTGGTGCTGGATCACATGAACGA ] consensusID : consensus_7348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence [AAAAGAGGGCGGCGGAATTCCTCGAGAACTGTTGGCCTACTGGACGATTCTAGTCGGTCTTACAACGGTCAAAAAGGCACGATAGTGCTG-CAAAATTTTGTGCAATCATCTAAAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGGTTCTTTAACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCAGCGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTTTCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGAAACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATAC-CGCCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTTAAGGGTTAAGAGCATAAAATGGAGCGAAAGAGACTTAAAAAAAAAAAAAAAAAAGAAAAAAGGCCACATGTGCCC] [-] EMBL CNS08UHK [AAAAGAGGGCGGCGGAATTCCTCGAGAACTGTTGGCCTACTGGACGATTCTAGTCGGTCTTACAACGGTCAAAAAGGCACGATAGTGCTG CAAAATTTTGTGCAATCATCTAAAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGGTTCTTTAACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCAGCGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTTTCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGAAACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATAC CGCCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTTAAGGGTTAAGAGCATAAAATGG ] [+] EMBL CNS08UHJ [ AACGGTC AGAAGGCACGATA GCTGACAAAATTTTGTGCAATCATCTAAAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGGTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCA CGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATACGCG CTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTTAAGGGTTAAGAGCATAAAATGGAGCGAAAGAGACTTAAAAAAAAAAAAAAAAAAGAAAAAAGGCCACATGTGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7348#0 ------------------------------------------------------------ consensus_7348#1 AAAAGAGGGCGGCGGAATTCCTCGAGAACTGTTGGCCTACTGGACGATTCTAGTCGGTCT 60 consensus_7348#0 ------------CCGGGCACGGTAGTGCTGCAAAATTTTGTGCAATCATCTACAATCAGC 48 consensus_7348#1 TACAACGGTCAAAAAGGCACGATAGTGCTGCAAAATTTTGTGCAATCATCTAAAATCAGC 120 ****** ****************************** ******* consensus_7348#0 TCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTC 108 consensus_7348#1 TCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTC 180 ************************************************************ consensus_7348#0 AAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAG 168 consensus_7348#1 AAGGTTCTTTAACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAG 240 *** ****** ************************************************* consensus_7348#0 GTGGTGATAAGCA-CGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGA 227 consensus_7348#1 GTGGTGATAAGCAGCGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTTTCTGCTGGA 300 ************* ************************************ ********* consensus_7348#0 AGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTAC 287 consensus_7348#1 AGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTAC 360 *************************** ******************************** consensus_7348#0 AAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGT 347 consensus_7348#1 AAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGT 420 ************************************************************ consensus_7348#0 ATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGAT 407 consensus_7348#1 ATACATTGGTTCGAATGAGCGGAAACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGAT 480 *********************** ************************************ consensus_7348#0 GTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCC 467 consensus_7348#1 GTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATACCGCCTCC 540 ************************************************** ** **** consensus_7348#0 TTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAA 527 consensus_7348#1 TTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTT----- 595 **************************************************** * consensus_7348#0 CGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTA 587 consensus_7348#1 --AAGGGTTAAGAGCATAAAATGGAGCGAAAGAGACTTAAAAAAAAAAAAAAAAAAGAAA 653 *** * ** * * *** ** * * * *** * consensus_7348#0 CCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCAT 647 consensus_7348#1 AAAGGCCACATGTGCCC------------------------------------------- 670 ** *** * * * consensus_7348#0 CGGTAACACGCAGAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCAT 707 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 CACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCC 767 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 TAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAAT 827 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 TGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCG 887 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 CATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGT 947 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 GGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAATT 1007 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 GGTGCTGGATCACATGAACGAAGGCAGTGGTAATGTGACGATCGTGGATAACTTGGATGA 1067 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 GGCGAAGGTGAAACAATATTTGTTGAATTTACGTTAAAGTATAGTTCGTTAGAATTGATA 1127 consensus_7348#1 ------------------------------------------------------------ consensus_7348#0 TCAAATACAAA 1138 consensus_7348#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||