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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1138 fasta sequence
[CCGGGCACGGTAGTGCTGCAAAATTTTGTGCAATCATCTACAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAATTGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCGCATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGTGGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAA-TTGGTGCTGGATCACATGAACGAAGGCAGTGGTAATGTGACGATCGTGGATAACTTGGATGAGGCGAAGGTGAAACAATATTTGTTGAATTTACGTTAAAGTATAGTTCGTTAGAATTGATATCAAATACAAA]
[+] EMBL BM652282 [CCGGGCACGGTAGTGCTGCAAAATTTTGTGCAATCATCTACAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACACGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCA ]
[+] EMBL BM645695 [ ccgGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACACGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCA ]
[+] EMBL BX608181 [ GATATCTTTGATTTTGTCAAGGTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCACGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCCAAACAAGAAGTAGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGTACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAACGAAGTGATATTTGTTAACCTAGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACACGCAGAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTG ]
[+] EMBL BX608502 [ CGATGCCCTTCAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACTCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACTCGCTGATAAACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCTTTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACA CACAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAATTGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCGCATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGTGGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAA TTGGTGCTGGATCACATGAACGAAGGCAGTGGTAATGTGACGATCGTGGATAACTTGGATGAGGCGAAGGTGAAACAATATTTGTTGAATTTACGTTAAAGTATAGTTCGTTAGAATTGATATCAAATACAAA]
[+] EMBL BX616289 [ CTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACTCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACTCGCTGATAAACCAGCATCCAAACGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCTTTGCTGTTGAAAGTTTACCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCATCGGTAACA CACAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCATCACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCCTAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAATTGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCGCATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGTGGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAATTTGGTGCTGGATCACATGAACGA ]
consensusID : consensus_7348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence
[AAAAGAGGGCGGCGGAATTCCTCGAGAACTGTTGGCCTACTGGACGATTCTAGTCGGTCTTACAACGGTCAAAAAGGCACGATAGTGCTG-CAAAATTTTGTGCAATCATCTAAAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGGTTCTTTAACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCAGCGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTTTCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGAAACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATAC-CGCCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTTAAGGGTTAAGAGCATAAAATGGAGCGAAAGAGACTTAAAAAAAAAAAAAAAAAAGAAAAAAGGCCACATGTGCCC]
[-] EMBL CNS08UHK [AAAAGAGGGCGGCGGAATTCCTCGAGAACTGTTGGCCTACTGGACGATTCTAGTCGGTCTTACAACGGTCAAAAAGGCACGATAGTGCTG CAAAATTTTGTGCAATCATCTAAAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGGTTCTTTAACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCAGCGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTTTCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGAAACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATAC CGCCTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTTAAGGGTTAAGAGCATAAAATGG ]
[+] EMBL CNS08UHJ [ AACGGTC AGAAGGCACGATA GCTGACAAAATTTTGTGCAATCATCTAAAATCAGCTCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTCAAGGTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAGGTGGTGATAAGCA CGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGAAGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTACAAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGTATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGATGTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATACGCG CTCCTTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTTAAGGGTTAAGAGCATAAAATGGAGCGAAAGAGACTTAAAAAAAAAAAAAAAAAAGAAAAAAGGCCACATGTGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7348#0 ------------------------------------------------------------
consensus_7348#1 AAAAGAGGGCGGCGGAATTCCTCGAGAACTGTTGGCCTACTGGACGATTCTAGTCGGTCT 60
consensus_7348#0 ------------CCGGGCACGGTAGTGCTGCAAAATTTTGTGCAATCATCTACAATCAGC 48
consensus_7348#1 TACAACGGTCAAAAAGGCACGATAGTGCTGCAAAATTTTGTGCAATCATCTAAAATCAGC 120
****** ****************************** *******
consensus_7348#0 TCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTC 108
consensus_7348#1 TCTTGTTAACGGCGGAAGGAACTTACGGCGTGTGAAAAAATGGATATCTTTGATTTTGTC 180
************************************************************
consensus_7348#0 AAGCTTCTTTCACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAG 168
consensus_7348#1 AAGGTTCTTTAACTGCTATGCGCATTAGTGGCTAATGTAAACAGTGCAGATCGCACCAAG 240
*** ****** *************************************************
consensus_7348#0 GTGGTGATAAGCA-CGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTATCTGCTGGA 227
consensus_7348#1 GTGGTGATAAGCAGCGGATGCAGGTGCAGATGATGCATGGGCGTTGTATTTTCTGCTGGA 300
************* ************************************ *********
consensus_7348#0 AGCTAAACAAGAAGTGGACGTACTCGCTATTTGCTGCACGAAGGGCAACACCAATGTTAC 287
consensus_7348#1 AGCTAAACAAGAAGTGGACGTACTCGCCATTTGCTGCACGAAGGGCAACACCAATGTTAC 360
*************************** ********************************
consensus_7348#0 AAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGT 347
consensus_7348#1 AAATGTGGCCACAAACGTGCTGCGAGTGCTCGATGCCCTACAGCGTACGGATATTCCGGT 420
************************************************************
consensus_7348#0 ATACATTGGTTCGAATGAGCGGATACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGAT 407
consensus_7348#1 ATACATTGGTTCGAATGAGCGGAAACTGCTTCCCGAGCCATCGGTAAACCCGGACGAGAT 480
*********************** ************************************
consensus_7348#0 GTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGACACGCGCTCC 467
consensus_7348#1 GTACTTTGGCGCCGATGGCTTTTCAGATGTCGTCTTCGAACGGGAACCGATACCGCCTCC 540
************************************************** ** ****
consensus_7348#0 TTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGCATCCAAA 527
consensus_7348#1 TTTACAGGAGCGACAACACGCACTGCAAGAGCTATACACGCTGATAGACCAGGTT----- 595
**************************************************** *
consensus_7348#0 CGAAGTGATATTTGTTAACCTTGGTCCGCTGACGGATCTTGCATTGCTGTTGAAAGTTTA 587
consensus_7348#1 --AAGGGTTAAGAGCATAAAATGGAGCGAAAGAGACTTAAAAAAAAAAAAAAAAAAGAAA 653
*** * ** * * *** ** * * * *** *
consensus_7348#0 CCCTGCTACACGCACGCTCTTGAAGGCCATCTACCTGATGGGGGGAAATCGTCACGGCAT 647
consensus_7348#1 AAAGGCCACATGTGCCC------------------------------------------- 670
** *** * * *
consensus_7348#0 CGGTAACACGCAGAGTGCAGCTGAATTTAACTTCTACAACGATCCCGAATCGGCTAGCAT 707
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 CACGTTTAATGCCTACCAAGGTCCGATCGTTGTTATACCATGGGAAACGGCCTTGCGCCC 767
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 TAACCTTGTTACCAGCTTCGAGTGGCGGATGGACGTGCTGGGGAATAGCAACAAAACAAT 827
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 TGTCGACATTTTGAACCAGGTCGAACGTGTAGCGCTAGAAAAGCTGCCGGAAAAGGATCG 887
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 CATTTGGATGCCTTGCGATTTGCTGGTTTCGATGCTGCTGGTACACCCTCACCTGCTCGT 947
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 GGAAAGTAAACGGTACAGCGGAGACGTTGAGTTGAATGGCCGGCTAACCCGCGGCCAATT 1007
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 GGTGCTGGATCACATGAACGAAGGCAGTGGTAATGTGACGATCGTGGATAACTTGGATGA 1067
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 GGCGAAGGTGAAACAATATTTGTTGAATTTACGTTAAAGTATAGTTCGTTAGAATTGATA 1127
consensus_7348#1 ------------------------------------------------------------
consensus_7348#0 TCAAATACAAA 1138
consensus_7348#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||