|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence
[CCGGTTGTTCAGCATTAAATAAACAGTACGCTTGCAGTAGCAGCAGGATGAGCGGTGAACAAACGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAACTACGCTACAACACACAGACACCTTCGGTTCGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATGAATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCAC---------TAACTAGAACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGACCACGGTTTC---TG-TTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCATATACCTTTACACATATATACGGAATCGTTACACGCTCCTACGGGCAGACAAGGAGCGGGTGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTTTGAAGCTATAAAGCATGGTGAAGTGAGTGACGTGATGATAGACAAGCGCGCCCTCTCTCTATGCTAATCTGCATAGTGTAGTGAACATATCATTTGCAAGTTGAGAGTGCATGTGTGTGCATGTGTGTGTATCATCGTTCGGTGTGACGATTGAGTTTTTGTTTTGTGAGCATCCCGTTCTTGATGCTATATTAAAGATTGAACTACTAACACATTTATACTAAGGTATGCAATGAAGACGGAGATCGTTAACGAAGTAGTTTATGAAAACGCTAATAAGAACACTATTAAAGCCCCACGATCAAGGCATCAGGGGAAGAGTAGAGACAGATGATGTTCGGTAATTGCATATCGGCGGGCTTATAACATTTAATATTGGTGCCGAAGAAATGCGGGAATTGTTGTTAGGCTGATA]
[+] EMBL BM593790 [CCGGTTGTTCAGCATTAAATAAACAGTACGCTTGCAGTAGCAGCAGGATGAGCGGTGAACAAACGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAACTACGCTACAACACACAGACACCTTCGGTTCGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATGAATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCAC TAACTAGAACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGACCACGGTTTC CG TTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATGTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACCAATTAATATATCTTTATATATGCATATACCTTTACACATATATACGGAATCGTTACACGCTCCTACGGGCAGACAAGGAGCGGGTGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTTTGAAGCTATAAAGCATGGTGAAGTGAGTGACGTGATGATAGAC ]
[-] EMBL BX627401 [ AGACACTTTCGGTTNGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATGAATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCACTAACACGTATAACTAGAACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGATCACGGTTTCCGTTGTTTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCATATACCTa ]
[+] EMBL BX607672 [ GACCACGGTTTC TG TTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCATATACCTTTACACATATATACGGAACCGTTACACGCTCCTACGGGCAGACAAGGAGCGGGTGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTTTGAAGCTAT AAGCATGGTGAAGTGAGTGACGTGATGATAGACAAGCGCGCCCTCTCTCTATGCTAATCTGCATAGTGTAGTGAACATATCATTTGCAAGTTGAGAGTGCATGTGTGTGCATGTGTGTGTATCATCGTTCGGTGTGACGATTGAGTTTTTGTTTTGTGAGCATCCCGTTCTTGATGCTATATTAAAGATTGAACTACTAACACATTTATACTAAGGTATGCAATGAAGACGGAGATCGTTAACGAAGTAGTTTATGAAAACGCTAATAAGAACACTATTAAAGCCCCACGATCAAGGCATCAGGGGAAGAGTAGAGACAGATGATGTTCGGTAATTGCATATCGGCGGGCTTATAACATTTAATATTGGTGCCGAAGAAATGCGGGAATTGTTGTTAGGCTGATA]
consensusID : consensus_7349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 885 fasta sequence
[CCGCTCCAGCCTGCAAAGGAAAAAGACGCCATGAAAAGCCGTGCGAGCAAACCAAGCTCCAAGATAGCGGCACGCTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCACCAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACGCTCAGCACGGGCGATATTGTGATTACGAAGATATTTTTCAAGGAGGAGCAAAACAAGAAGGCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGAATTGCTCAAAAAGAACGGCACCACTACGGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGACGGCGCAAATGGTGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATAT-GACTT-GGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATAT-GATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTATGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTANGGTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGNTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAA]
[+] EMBL BM575522 [CCGCTCCAGCCTGCAAAGGAAAAAGACGCCATGAAAAGCCGTGCGAGCAAACCAAGCTCCAAGATAGCGGCACGCTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCACCAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACGCTCAGCACGGGCGATATTGTGATTACGAAGATATTTTTCAAGGAGGAGCAAAACAAGAAGGCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGAATTGCTCAAAAAGAACGGCACCACTACGGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGACGGCGCAAATGGTGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATTTGGACTTGGGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATATGGATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCAC ]
[+] EMBL BX621717 [ CTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCACCAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACGCTCAGCACGGGCGATATTGTGATTACGAANATATTTTTCAAGGAGGAGCAAAACAAGAAGGCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGAATTGCTCAAAAAGAACGGCACCACTACNGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGACGGCGCAAATGGNGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATAT GACTT GGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATAT GATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTATGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTANGGTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGNTCACCGCTCATCCTGCTGCTACT ]
[+] EMBL BM576429 [ ccgGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATAT GACTT GGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATAT GATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTAGGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTAGGTTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAA]
consensusID : consensus_7349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[AGATCCCGAGGTTAATATTTGTCTCCCGCATTACGGATTGACGCGATCGTATCAGGACGTCTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTAGGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTAGGTTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAATCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCACGCACTTTGCAAAACTACGCTACAACCCACAGACACCTCTCGCGTCTCGCNCATTCCGCAAACACCNGTACTCTCACTGCTTTCCAAACTGAACTTACGCACTACTAACACTTCTCACACTGTACCGNCTCTGCGCCACATACCTACAACTCACTAACACGTATAACC]
[+] EMBL AL931038 [AGATCCCGAGGTTAATATTTGTCTCCCGCATTACGGATTGACGCGATCGTATCAGGACGTCTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTAGGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTAGGTTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAATCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCACGCACTTTGCAAAACTACGCTACAACCCACAGACACCTCTCGCGTCTCGCNCATTCCGCAAACACCNGTACTCTCACTGCTTTCCAAACTGAACTTACGCACTACTAACACTTCTCACACTGTACCGNCTCTGCGCCACATACCTACAACTCACTAACACGTATAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7349#1 CCGCTCCAGCCTGCAAAGGAAAAAGACGCCATGAAAAGCCGTGCGAGCAAACCAAGCTCC 60
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 -------------CCGGTTGTTCAGCATTAAATAAACAGTACGCTTGCAGTAGCAGCAGG 47
consensus_7349#1 AAGATAGCGGCACGCTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCAC 120
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 ATGAGCGGTGAACAAACGTACTGTTTATTTA-ATGTTGTTCAGCATTTGCAAAACTACGC 106
consensus_7349#1 CAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACG 180
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 TACAACACACAGACACCTTCGGTTCGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATG 166
consensus_7349#1 CTCAGCACGGGCGATATTGTGATTACGAAGATATTTTTCAAGGAGGAGCAAAACAAGAAG 240
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 AATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCACTAACTAG 226
consensus_7349#1 GCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGA-ATTGCTCAAAAAGAA 299
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 AACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGAC 286
consensus_7349#1 CGGCACCACTACGGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGA 359
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 CACGGTTTCTGTTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAA 346
consensus_7349#1 CGGCGCAAATGGTGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAG 419
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 CAAAACCAGAAACATACACAC-CTTATATATACACCGTAGCAACCGTAGCATTAGACAAC 405
consensus_7349#1 CAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATATGACTTGGGTGTGTGAGATC 479
consensus_7349#2 ------------------------------------------------------------
consensus_7349#0 CACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGA 465
consensus_7349#1 ACACACACCACAGCATATGTCCTCGGCATATATGATCCCGGGGTTTGATAACTATATTTG 539
consensus_7349#2 --------------------------------AGATCCCGAGGTTA-------ATATTTG 21
consensus_7349#0 GCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCA 525
* * ****
consensus_7349#1 TCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGC 599
consensus_7349#2 TCTCCCGCATTACGGATTGACGCGATCGTATCAGGACGTCTGTAG----------GCAGC 71
consensus_7349#0 TATACCTTTACACATATATACGGAATCGTTACACGCTCCTACGGGCAGACAAGGAGCGGG 585
* * ** ** ** *** ***** ** * * ** *
consensus_7349#1 TATATTTTTTAT-CGAATATTTA-TACCCCCGATAACGAAATTCCCGCGAGTGAGAATGA 657
consensus_7349#2 TATATTTTTTAT-CGAATATTTA-TACCCCCGATAACGAAATTCCCGCGAGTGAGAATGA 129
consensus_7349#0 TGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTT 645
* * * * ** * ** ** * * * *** * *** * ** ***
consensus_7349#1 CCACCCTATGCTACGTACCGGAG-GAATATTTCGCTCCCTCCCCTANGG-TTGTGAGTTT 715
consensus_7349#2 CCACCCTAGGCTACGTACCGGAG-GAATATTTCGCTCCCTCCCCTAGGT-TTGTGAGTTT 187
consensus_7349#0 TGAAGCTATAAAGCATGGTGAAGTGAGTGACGTGATGATAGACAAGCGCGCCCTCTCTCT 705
* *** * * * ** ** * * * * * * * *
consensus_7349#1 GTG-TGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAG 774
consensus_7349#2 GTG-TGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAG 246
consensus_7349#0 ATGCTAATCTGCATAGTGTAGTGAACATATCATTTGCAAGTTGAGAGTGCATGT-GTGTG 764
** * * ** * * ** * * * ** ** ** * ** * * * *
consensus_7349#1 CAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGNTCACCGCTCATCCT 834
consensus_7349#2 CAATCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCT 306
consensus_7349#0 CATGTGTGTGTATCATCGTTCG-GTGTGACGATTGAGT--TTTTGTTTTGTGAGCATCCC 821
** ** ** * * * * *** **** * * *****
consensus_7349#1 GCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCA-GCA-TT-TGCAAAA------ 885
consensus_7349#2 GCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCACGCACTT-TGCAAAACTACGC 365
consensus_7349#0 GTTCTTGATGC---TATATTAAAGATTGAAC--TACTAACACATTTATACTAAGGTATGC 876
* * * *** ** * *** ** * * * ** ** * * **
consensus_7349#1 ------------------------------------------------------------
consensus_7349#2 TACAACCCACAGACACCTCTCGCGTCTCGCNCATTCCGCAAACACCNGTACTCTCACTGC 425
consensus_7349#0 AATGAAG-ACGGAGATCGTTAACGA--AGTAGTTTATGAAAACGCTAATAAGAACACTAT 933
consensus_7349#1 ------------------------------------------------------------
consensus_7349#2 TTTCCAAACTGAACTTACGCACTACTAACACTTCTCACACTGTACCGNCTCTGCG-CCAC 484
consensus_7349#0 TAAAGCCCCACGATCAAGGCATCAGGGGAAGAGTAGAGACAGATGATGTTCGGTAATTGC 993
consensus_7349#1 ------------------------------------------------------------
consensus_7349#2 ATACCTACAACTCACTAACACGTATAACC------------------------------- 513
consensus_7349#0 ATATCGGCGGGCTTATAACATTTAATATTGGTGCCGAAGAAATGCGGGAATTGTTGTTAG 1053
consensus_7349#1 -------
consensus_7349#2 -------
consensus_7349#0 GCTGATA 1060
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||