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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1199 fasta sequence
[TAAATCATGAAAGGATGTGAGCATTTTCTCTTTACAATCTTTATCCGTAGCGACTGCAATGAGTTCCCTCAATCAGGACCAGAACATCATGGACTCAATTTCATTTGCTTTAGTTTATTTATCAACAAAAGCCCAGAAAAAGATAATGTAATTAATCCCTCTTTCAGGTTGCAGAATTGATAAAAAAAACCATTATTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAACATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTTTTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTTAAAAAGTTTCACCCGAAACTGTG-TTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCTCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCA-----AAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACATACAAAACATACAATTTCATCAACATGCGCTTTGAAGAGAATGC---AGAAGTAGAAGAAAAAGAAGAAGAAAAGTAAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAAAAAGAAAAGAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGAC]
[+] EMBL BX613740 [TAAATCATGAAAGGATGTGAGCATTTTCTCTTTACAATCTTTATCCGTAGCGACTGCAATGAGTTCCCTCAATCAGGACCAGAACATCATGGACTCAATTTCATTTGCTTTAGTTTATTTATCAACAAAAGCCCAGAAAAAGATAATGTAATTAATCCCTCTTTCAGGTTGCAGAATTGATAAAAAAAACCATTATTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAACATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTTTTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTTAAAAAGTTTCACCCGAAACTGTG TTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCTCCTTCTCTCTC ]
[+] EMBL BX618297 [ CTTTCAGGTTGCAGAATTGATAAAAAAAACCCTTTTTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAACATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTTTTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTTAAAAAGTTTCACCCGAAACTGTG TTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCTCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTAGTAAAGCAAACCATTACAGGTCTTGAAAACACTTTCCTGAAGCTGGTTCATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCATGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCA AAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACATACAAAACATACAATTTCATCAACATGCGCTTTGAAGAGAATGC AGAAGTAGAAGAAAAAGAAGAAGAAAAGTAAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGAC ]
[+] EMBL BX611497 [ atTTTTAATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAATTTAAAAAGTTTCACCCGAAACTGTGTTTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGGAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCCCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCAAACACAAAACTACGCGTACCAATAGCAAAAAG ]
[+] EMBL BX616055 [ CCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGGAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCCCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCAAACACAAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACATACAAAACATACCATTTCATCAACATGCGCTTTGAAGAGAATGCAGAAGAAGAAGAAGAAAAAGAAGAAGAAAAG GAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAAC ]
[+] EMBL BM639249 [ CGTATGCAATACCA AAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACGTACAAAACATACAATTTCATCAACATGCGCTTTGAAGAGAATGC AGAAGTAGAAGAAAAAGAAGAAGAAAAGTAAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAAAAAGAAAAGAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGAC]
consensusID : consensus_7352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[ATGCCCCNAACACCCAACCTACGCGTACCAATAGCCNAANAGGCAAACTTGATCACANCAGCAAGCAGTTACAACATACCAAACATACCACTTTCGATCAACACTGCGCTTTGAAGAGAATGCAGAAGCAAGNAGAAGACAACAAGAAGAAGCAAACAGGCACAAAAGGATTCTCGATACTTACTCGCATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAGAAACAAAACAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGACAGAGAAAAATAAAGTATAACATAATTAATTGGAAAAAATAAAAAAAAAGCAGGC]
[-] EMBL BX466746 [ATGCCCCNAACACCCAACCTACGCGTACCAATAGCCNAANAGGCAAACTTGATCACANCAGCAAGCAGTTACAACATACCAAACATACCACTTTCGATCAACACTGCGCTTTGAAGAGAATGCAGAAGCAAGNAGAAGACAACAAGAAGAAGCAAACAGGCACAAAAGGATTCTCGATACTTACTCGCATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAGAAACAAAACAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGACAGAGAAAAATAAAGTATAACATAATTAATTGGAAAAAATAAAAAAAAAGCAGGC]
consensusID : consensus_7352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[AGGCAGAAATCGGCACGAGGAGAGCTTCTAAATCTGGGTAAGCNCCACCACTTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATATCTGGTCGTGCGTGTTATATCANTTTGAATCCGCCCATCTTCCATGAATAATAAGGCGCGTATTTCAATACCCAACACCAAAACTACGCGTACCAAACACAAAACTACGCGTACCACATAGTCGAAAAAGGCAAATNTGATAAACAAGAACAGCTTTTACACTATCACAAACATATC]
[+] EMBL BX467640 [AGGCAGAAATCGGCACGAGGAGAGCTTCTAAATCTGGGTAAGCNCCACCACTTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATATCTGGTCGTGCGTGTTATATCANTTTGAATCCGCCCATCTTCCATGAATAATAAGGCGCGTATTTCAATACCCAACACCAAAACTACGCGTACCAAACACAAAACTACGCGTACCACATAGTCGAAAAAGGCAAATNTGATAAACAAGAACAGCTTTTACACTATCACAAACATATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7352#0 TAAATCATGAAAGGATGTGAGCATTTTCTCTTTACAATCTTTATCCGTAGCGACTGCAAT 60
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 GAGTTCCCTCAATCAGGACCAGAACATCATGGACTCAATTTCATTTGCTTTAGTTTATTT 120
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 ATCAACAAAAGCCCAGAAAAAGATAATGTAATTAATCCCTCTTTCAGGTTGCAGAATTGA 180
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TAAAAAAAACCATTATTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAAC 240
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 ATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTT 300
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTT 360
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 AAAAAGTTTCACCCGAAACTGTGTTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGA 420
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 ATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTA 480
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TGTTTAGGCTGGATATTATTTCTCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCT 540
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 AAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTA 600
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAA 660
consensus_7352#1 ------------------------------------------------------------
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 TCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCAAAAACTACGCGTACCAAT 720
consensus_7352#1 ---------------------------ATGCCCCNAACACCCAAC-CTACGCGTACCAAT 32
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 AGC-AAAAAGGCAAA-TTGATAAAAA----GAAGAGTTA-AACATACAAAACAT-ACAAT 772
consensus_7352#1 AGCCNAANAGGCAAACTTGATCACANCAGCAAGCAGTTACAACATACCAAACAT-ACCAC 91
consensus_7352#2 --------AGGCAGAAATCGGCACGA-GGAGAGCTTCTAAATCTGGGTAAGCNCCACCAC 51
***** * * * * ** * * ** * ** *
consensus_7352#0 TTC---ATCAACA-TGCGCTTTGAAGAGAATGCAGAAGTAGAAGAAA------AAGAAGA 822
consensus_7352#1 TTTC-GATCAACACTGCGCTTTGAAGAGAATGCAGAAGCAAGNAGAAGACAACAAGAAGA 150
consensus_7352#2 TTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAA--------GGTAA 103
** ** * * **** * ** ** * ** * *
consensus_7352#0 AGAAAA---GTAAAAAAGGATTCTCGATACTTACTG----ATGTAAATCGAAAATGAAAG 875
consensus_7352#1 AGCAAACAGGCACAAAAGGATTCTCGATACTTACTCG--CATGTAAATCGAAAATGAAAG 208
consensus_7352#2 ACCCGA----TGCAGAA----TCTCTATATCTGGTCGTGCGTGTTATATCANTTTGAATC 155
* * * ** **** *** * * *** * * ****
consensus_7352#0 CAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGT---AAACAATGCAA 932
consensus_7352#1 CAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGT---AAACAATGCAA 265
consensus_7352#2 CGCCCATCTTCCATGAATAATAAGGCGCGTATTTCAATACCCAACACCAAAACTACGCGT 215
* ** **** * * * * ** * **** * **
consensus_7352#0 GCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAAAAAGAAAAGAAAA 992
consensus_7352#1 GCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAGAAACAAAACAAAA 325
consensus_7352#2 ACCAAACACAAAACTACGCGTACCACATAGTCGAAAAAGGCAAATNTGA--TAAACAAGA 273
* ***** ** * * ** * ** * ******* * * *** ** *
consensus_7352#0 ATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGT 1052
consensus_7352#1 ATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGT 385
consensus_7352#2 ACAGCTTTTACA----CTATCACAAACATATC---------------------------- 301
* ** * ** *** * ***** *
consensus_7352#0 ATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAG 1112
consensus_7352#1 ATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAG 445
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 GAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAA 1172
consensus_7352#1 GAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAA 505
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 CTATACATATTATATCTATTCTATGAC--------------------------------- 1199
consensus_7352#1 CTATACATATTATATCTATTCTATGACAGAGAAAAATAAAGTATAACATAATTAATTGGA 565
consensus_7352#2 ------------------------------------------------------------
consensus_7352#0 ---------------------
consensus_7352#1 AAAAATAAAAAAAAAGCAGGC 586
consensus_7352#2 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||