These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1294 fasta sequence [CCGCCCACGCGTCCGGCGACCCGCAAAAACCCGCAGAGCAGCGTGCGATGGTGATGATGGATTATTTCGACATGTTTCCACACATGCTCTTGCAAACGGACGGCGGGAGCCTGTGCGTGTGCTTCCGATTGCGCTTAACCGCCTAATGATGACAGCATCGTAAGCGGCAGAGAAGCGCAAGTAAAAAAGACCCTTCCCCCCTCTCCAATATAGAAGCCATTCCCTATAACCCCGCGCGGTATCCCCCGGTATATTAGTAAGGTGAAACACTACGTAGTAGGCGATGCTAACTATTAAGCGCGCGCGCGCCTCTTGTGAAGAACGTTTGTGCGTAAATAGGCAAGAGTTAGTGGCAGTGGTTAGTTAGAACAGAGGGGAGCGCGAACATTAATCAATCTCTGGTTGCAGCAGCAGCGAGTTTGCGTAGCGAGATATGACCTATACCTCAAAACTAGTGTGCAATTTTACTCTCTTTTCATTTGTGTGCCGCCTTTTTCTTGTTAGCAAATAGATTTACATCGATAATCAGTCGAAAGAGCGAAGCGGGCGGGCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGTCAAAA--TTCAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGC-AAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCACTACGAGAGAGGTGAAAACAAGGTTCAGGAAATAAAAGCAAAAGCCTATCCCCGCGATTA] [+] EMBL BM581178 [CCGCCCACGCGTCCGGCGACCCGCAAAAACCCGCAGAGCAGCGTGCGATGGTGATGATGGATTATTTCGACATGTTTCCACACATGCTCTTGCAAACGGACGGCGGGAGCCTGTGCGTGTGCTTCCGATTGCGCTTAACCGCCTAATGATGACAGCATCGTAAGCGGCAGAGAAGCGCAAGTAAAAAAGACCCTTCCCCCCTCTCCAATATAGAAGCCATTCCCTATAACCCCGCGCGGTATCCCCCGGTATATTAGTAAGGTGAAACACTACGTAGTAGGCGATGCTAACTATTAAGCGCGCGCGCGCCTCTTGTGAAGAACGTTTGTGCGTAAATAGGCAAGAGTTAGTGGCAGTGGTTAGTTAGAACAGAGGGGAGCGCGAACATTAATCAATCTCTGGTTGCAGCAGCAGCGAGTTTGCGTAGCGAGATATGACCTATACCTCAAAACTAGTGTGCAATTTTACTCTCTTTTCATTTGTGTGCCGCCTTTTTCTTGTTAGCAAATAGATTTACATCGATAATCAGTCGAAAGAGCGAAGCGGGCGGGCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGAT TTAT ATATTACATTCGTCAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTG ] [+] EMBL BX627135 [ GCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGTCAAAA TTCAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGC AAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGNTAGATGTTGAGTAGAATATTATG ] [+] EMBL BM581281 [ ccgAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGTCAAAA TTCAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCACTACGAGAGAGGTGAAAACAAGGTTCAGGAAATAAAAGCA ] [+] EMBL BX620617 [ AGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCCAAGC AAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCACTACGAGAGAGGTGAAAACAAGGTTCAGGAAATAAAAGCAAAAGCCTATCCCCGCGATTA] consensusID : consensus_7354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [AAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATTTATATATTACATTCGTCAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATTCGTGTTACTATTCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATACTGAGTTAAACAAACGACATAGTAGGGGAACGAACGAAAAAAAGGGTAAACACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACACCACCCCCAGAAGAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAAGGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATATTATGCCTCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCA] [+] EMBL BX624051 [AAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATTTATATATTACATTCGTCAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATTCGTGTTACTATTCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATACTGAGTTAAACAAACGACATAGTAGGGGAACGAACGAAAAAAAGGGTAAACACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACACCACCCCCAGAAGAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAAGGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATATTATGCCTCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCA] consensusID : consensus_7354#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence [GGCAAGAATCGGCACGTGGTGTTATTATGCTGTATGCTAACGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTGTATTAAAATTAGCAAGAGCACGACTTATAGCACTACGAGAGAGGTGAAATCACAAGGTTCAGGAAATAAAAGGCAAAAGCCTATCCCCGCGATTACAAGGCGATTATACACAGAAAAAAGTACGCCCAAGCAAGACGGCCGG] [+] EMBL BX467938 [GGCAAGAATCGGCACGTGGTGTTATTATGCTGTATGCTAACGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTGTATTAAAATTAGCAAGAGCACGACTTATAGCACTACGAGAGAGGTGAAATCACAAGGTTCAGGAAATAAAAGGCAAAAGCCTATCCCCGCGATTACAAGGCGATTATACACAGAAAAAAGTACGCCCAAGCAAGACGGCCGG] [+] EMBL BX620378 [ CAATATAAAACTGAACTAAAGGCGGAAATCAAAAGCAAAGCAAAGGGGGGga ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7354#0 CCGCCCACGCGTCCGGCGACCCGCAAAAACCCGCAGAGCAGCGTGCGATGGTGATGATGG 60 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 ATTATTTCGACATGTTTCCACACATGCTCTTGCAAACGGACGGCGGGAGCCTGTGCGTGT 120 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 GCTTCCGATTGCGCTTAACCGCCTAATGATGACAGCATCGTAAGCGGCAGAGAAGCGCAA 180 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 GTAAAAAAGACCCTTCCCCCCTCTCCAATATAGAAGCCATTCCCTATAACCCCGCGCGGT 240 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 ATCCCCCGGTATATTAGTAAGGTGAAACACTACGTAGTAGGCGATGCTAACTATTAAGCG 300 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 CGCGCGCGCCTCTTGTGAAGAACGTTTGTGCGTAAATAGGCAAGAGTTAGTGGCAGTGGT 360 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 TAGTTAGAACAGAGGGGAGCGCGAACATTAATCAATCTCTGGTTGCAGCAGCAGCGAGTT 420 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 TGCGTAGCGAGATATGACCTATACCTCAAAACTAGTGTGCAATTTTACTCTCTTTTCATT 480 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 TGTGTGCCGCCTTTTTCTTGTTAGCAAATAGATTTACATCGATAATCAGTCGAAAGAGCG 540 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 AAGCGGGCGGGCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAG 600 consensus_7354#1 ---------------------------------------------AAATAATTCATTCAG 15 consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 TGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGT 660 consensus_7354#1 TGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATT---TATATATTACATTCGT 72 consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 CAAAATT--CAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCT 718 consensus_7354#1 CAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCT 132 consensus_7354#2 ------------------------------------------------------------ consensus_7354#0 CTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAA- 777 consensus_7354#1 CTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATTCGTGTTACTATTCTGTATGCTAA- 191 consensus_7354#2 -------------------GGCAAGAATCGGCACGTGGTGTTATTATGCTGTATGCTAAC 41 * ** * ****** *** *********** consensus_7354#0 GCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAAC 837 consensus_7354#1 GCAGCGATAAGGAAATGGTAGAATACTGAGTTAAACAAACGACATAGTAGGGGAACGAAC 251 consensus_7354#2 GCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAAC 101 ************************* **************** ***************** consensus_7354#0 GAAAAAA-GGGTAAACAC--TACATTACAAAGCTGAAAACGAAACGTATCACACGTACAC 894 consensus_7354#1 GAAAAAAAGGGTAAACACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACAC 311 consensus_7354#2 GAAAAAA-GGGTAAACAC--TACATTACAAAGCTGAAAACGAAACGTATCACACGTACAC 158 ******* ********** **************************************** consensus_7354#0 CAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAG 954 consensus_7354#1 CAGACGCGGTACATACAAACACACACCACCCC-CA------------GAAGAAGAGTTAG 358 consensus_7354#2 CAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAG 218 ************************ ******* ** * * ********* consensus_7354#0 TTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGT 1014 consensus_7354#1 TTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGT 418 consensus_7354#2 TTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGT 278 ************************************************************ consensus_7354#0 AATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCC 1074 consensus_7354#1 AATTAACGCTTTGAAGGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCC 478 consensus_7354#2 AATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCC 338 *************** ******************************************** consensus_7354#0 AACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATT 1134 consensus_7354#1 AACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATT 538 consensus_7354#2 AACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATT 398 ************************************************************ consensus_7354#0 TAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATAT--TATGCCGCGGCCTCATTATA 1192 consensus_7354#1 TAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATATTATGCCTCGGCCTCATTATA 598 consensus_7354#2 TAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATAT--TATGCCGCGGCCTCATTATA 456 ************************************** ****** ************* consensus_7354#0 TACATATACTATATTAAAATTAGCAAGAGCACGA-TTATAGCACTACGAGAGAGGTGAAA 1251 consensus_7354#1 TACATATACTATATTAAAATTAGCAAGAGCACGA-TTATAGCA----------------- 640 consensus_7354#2 TACATATACTGTATTAAAATTAGCAAGAGCACGACTTATAGCACTACGAGAGAGGTGAAA 516 ********** *********************** ******** consensus_7354#0 ACAAGGTTCAGGAAATAAAAGCAAAAGCCTATCCCCGCGATTA----------------- 1294 consensus_7354#1 ------------------------------------------------------------ consensus_7354#2 TCACAAGGTTCAGGAAATAAAAGGCAAAAGCCTATCCCCGCGATTACAAGGCGATTATAC 576 consensus_7354#0 --------------------------------- consensus_7354#1 --------------------------------- consensus_7354#2 ACAGAAAAAAGTACGCCCAAGCAAGACGGCCGG 609 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||