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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 990 fasta sequence
[GTTGTCTGCGCGATGGGAGACGTTCACTTACGACACTTGGCAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAACTTGCTTGCCACTTTAAAATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAGGAAAAATGATAAAACACACCAAGGCTAGATTACGGGGCGGTTCTTATTGTGTTTGTGTTAAACGTTATGCAAACACACTTGGTTGAGGAAATGAAAAAGAAAAACAGGGCCTCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCAGCGTTACTATTTGCATAC---ACTTCGTACAGTCGGGAAAAGATCAGATCTCTTTGAACTTGCCACAAACAGAGAACGTCTGTTGTAGAACAACACGAGACGGTGTTGCGTTTTGTGTACCAGTATTTATTTTCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTTATAATTTTCCAACAAGAGCAAAACACTTTCAAACGAATGCGTTT-AATGTTGGAAAAATGACGCATAAAAACGCGGGAACCCTTACACGAAGAATGCTTGATT-AAATCTCCTTAAACATGAAGCTTAGAGTGTAATATCTCAACCACAGGTATTAGTAATTGTCGCAACAAGTCGAAGCATTGTGACATGCTCGGAGAGGAAGATAGGTAACAGGAAACATTAGACATTGAAGAAAATTAGCCTGTTCGATGATAATTTCAACAGCTCGTCGAAATGTTACACAAACGAAGAGCAGCAACATACTACAGCAAAGTAAGTTTATTGAAATTACTGAATGTGTAACAACTGGGAACATAGAGTTTAAAAATGCAACGGTCAAACAATCCAACTGAAAGAGCGAAACAGAACGAACAAGCAAACACATTCGAAGAGAGTAGAATGAACAAGTCGTTTGATAAATTTGTAAAACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGGGGGGGGGGGGGGGGGG]
[+] EMBL BX610463 [GTTGTCTGCGCGATGGGAGACGTTCACTTACGACACTTGGCAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAACTTGCTTGCCACTTTAAAATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAGGAAAAATGATAAAACACACCAAGGCTAGATTACGGGGCGGTTCTTATTGTGTTTGTGTTAAACGTTATGCAAACACACTTGGTTGAGGAAATGAAAAAGAAAAACAGGGCCTCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCAGCGTTACTATTTGCATAC ACTTCGTACAGTCGGGAAAAGATCAGATCTCTTTGAACTTGCCACAAACAGAGAACGTCTGTTGTAGAACAACACGAGACGGTGTTGCGTTTTGTGTACCAGTATTTATTTTCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTTATAATTTTCCAACAAGAGCAAAACACTTTCAAACGAATGCGTTTAAATGTTGGAAAAATGACGCATAAAAACGCGGGAACCCTTACACGAAGAATGCTTGATTAAAATCT CTTAAACATGAAGCTTAG ]
[+] EMBL BX609364 [GTTGTCTGCGCGATGGGAGACGTTCACTTACGACACTTGGCAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAACTTGCTTGCCACTTTAAAATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAGGAAAAATGATAAAACACACCAAGGCTAGATTACGGGGCGGTTCTTATTGTGTTTGTGTTAAACGTTATGCAAACACACTTGGTTGAGGAAATGAAAAAGAAAAACAGGGCCTCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCAGCGTTACTATTTGCATAC ACTTCGTACAGTCGGGAAAAGATCAGATCTCTTTGAACTTGCCACAAACAGAGAACGTCTGTTGTAGAACAACACGAGACGGTGTTGCGTTTTGTGTACC ]
[+] EMBL CNS096Z6 [ GCAGCTTGCTTGCCACTTTAAAATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAGGAAAAATGATAAAACACACCAAGGCTAGATTACGGGGCGGTTCTTATTGTGTTTGTGTTAAACGTTATGCAAACACACTTGGTTGAGGAAATGAAAAAGAAAAACAGGGCCCCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCAGCGTTACTATTTGCATACACTACTTCGTACAGTCGGGAAAAGATCAGATCTCTTTGAACTTGCCACAAACAGAGAACGTCTGTTGTAGAACGACACGAGACGGTGTTGCGTTTTGTGTACCAGTATTTATTTTCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTTATAATTTTCCAACAAGAGCAAAACACTTTCAAACGAATGCGTTT AATGTTGGAAAAATGACGCATAAAAACGCGGGAACCCTTACACGAAGAATGCTTGATT AAATCTCCTTAAACATGAAGCTTAGAGTGTAATATCTCAACCACAGGTATTAGTAATTGTCGCAACAAGTCGAAGCATTGTGACATGCTCGGAGAGGAAGATAGGTAACAGGAAACATTAGACATTGAAGAAAATTAGCCTGTTCGATGATAATTTCAACAGCTCGTCGAAATGTTACACAAACGAAGAGCAGCAACATACTACAGCAAAGTAAGTTTATTGAAATTACTGAATGTGTAACAACTGGGAACATAGAGTTTAAAAATGCAACGGTCAAACAATCCAACTGAAAGAGCGAAACAGAACGAACAAGCAAACACATTCGAAGAGAGTAGAATGAACAAGTCGTTTGATAAATTTGTAAAACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGGGGGGGGGGGGGGGGGG]
[+] EMBL BX623688 [ TTGGTTGAGGAAATGAAAAAGAAAAACAGGGCCTCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCAGCGTTACTATTTGCATAC ACTTCGTACAGTCGGGAAAAGATCAGATCTCTTTGAACTTGCCACAAACAGAGAACGTCTGTTGTAGAACAACACGAGACGGTGTTGCGTTTTGTGTACCAGTATTTATTTTCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTTATAATTTTCCAACAAGAGCAAAACACTTTCAAACGAATGCGTTT AATGTTGGAAAAATGACGCATAAAAACGCGGGAACCCTTACACGAAGAATGCTTGATT AAATCTCCTTAAACATGAAGCTTAGAGTGTAATATCTCAACCACAGGTATTAGTAATTGTCGCAACAAGTCGAAGCATTGTGACATGCTCGGAGAGGAAGATAGGTAACAGGAAACATTAGACATTGAAGAAAATTAGCCTGTTCGATGATAATTTCAACAGCTCTTCGAAACATTACGCAAACGAAGAGCAGCAACATACTACAGCAAAGTAAGTTTATTGAAATTACTGAATGTGTAACAACT GGAACATAGAGTTTGAAAATGCAACAGTCAAACAATCCAACTGAAAGAGCGAAACAGAACGAACNAGCAAACACATTCGAAGAGAGTAGAATGAACAAGTCGTTTGATAAATTTGTAA ]
[-] EMBL CNS096Z7 [ TCGAACCCTTTTGGCTTGGTTTGGTTTATAATTTTCCAACAAGAGCAAAAAACTTTCAAACGAATGCGTTT AATGTTGGAAAAATGACGCATAAAAACGCGGGAACCCTTACACGAAGAATGCTTGATT AAATCCCCTTAAACATGAAGCTTAGAGTGTAATATCTCAACCACA ]
consensusID : consensus_7356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 823 fasta sequence
[GCAAGAATCGGCACGATGGACGACACTTGGCAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAGCTTGCTTGCCACTTTAAAATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAGCTTGCTTGCCACTTTAAACATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAGGAAAAATGATAAAACACACCAAGGGCTAGATTACGGGGCCGGTTCTTATTGTGTTTGTGTTAAACGTTATGCAAACACACTTGGTTGAGGAAATGAAAAAGGAAAAACAGGGCCCCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCAGCGTTACTATTTGCATACACTACTTCGTACAGTCGGGATCAGATCAAATCTCTTTGCACTTGCCACAAACGTCTGTTGTAGGAACAACACGAGACGGTGTTGCGTNTTGTGTACCAGTATTTATTTGCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTGATTTTCCAACAAGAGCAANAAACACTTTCAAACGAATGCGTNTGCACCTGGTNGGGAACANATGACCCATTAGAAACGCGGGGAAACCTTGACACGGAAGAATGGNTTGATTTAANAATTGCCCCTTAGAAACACGCATTGGAAAGGCTTTCAGGAAGTTGTACATTGAATATCTGGAAAGCCCCACAAAGGGNNATACAGGGACACATTGGGTCGGGCAANAACAAGAGGGTCCGAAAGCNCANTTGGTGGACATTGGCGCTCCGGGANNGAAG]
[+] EMBL BX467540 [GCAAGAATCGGCACGATGGACGACACTTGGCAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAGCTTGCTTGCCACTTTAAAATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAGCTTGCTTGCCACTTTAAACATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAGGAAAAATGATAAAACACACCAAGGGCTAGATTACGGGGCCGGTTCTTATTGTGTTTGTGTTAAACGTTATGCAAACACACTTGGTTGAGGAAATGAAAAAGGAAAAACAGGGCCCCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCAGCGTTACTATTTGCATACACTACTTCGTACAGTCGGGATCAGATCAAATCTCTTTGCACTTGCCACAAACGTCTGTTGTAGGAACAACACGAGACGGTGTTGCGTNTTGTGTACCAGTATTTATTTGCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTGATTTTCCAACAAGAGCAANAAACACTTTCAAACGAATGCGTNTGCACCTGGTNGGGAACANATGACCCATTAGAAACGCGGGGAAACCTTGACACGGAAGAATGGNTTGATTTAANAATTGCCCCTTAGAAACACGCATTGGAAAGGCTTTCAGGAAGTTGTACATTGAATATCTGGAAAGCCCCACAAAGGGNNATACAGGGACACATTGGGTCGGGCAANAACAAGAGGGTCCGAAAGCNCANTTGGTGGACATTGGCGCTCCGGGANNGAAG]
consensusID : consensus_7356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[CCGTTATTTTCCAACAAGAGCAAAACACTTTCAAACGAATGCGTTTAATGTTGGAAAAATGACACATAAAAACGCGGGAACCCTTACACGAAGAATGCTTGATTAAATCCCCTAAAACATGAAGCTTAGAGTGTAATATCTGAACCACAGGTATTAGTAATTGTCGCAACAAGTCGAAGCATTGTGACATGCTCGGAGAGGAAGATAGGTAACAGGAAACATTAGACATTGAAGAAAATTAGCCTGTTCGATGATAATTTCAACAGCTCGTCGAAATGTTACACTTACGAAGAGCAGCAACATACTACAGCAAAGTAAGTTTATTGAAATTACTGAATGTGTAACAACTGGAACATAGAGTTTGAAAATGCAACAGTCAAACAATCCAACTGAAAGAGCGAAACAGAACGAACAAGCAAACACATTCGAAGAGAGTAGAATGAACAAGTCGTTTGATAAATTTGTAAAACCCTACTACATGTGTAACGTACGTGCATAATTTGCTTAACCTTATCTACCAACTAAGTAAGTGTGTTTGTGTATGTGTGTGCGTGCTATGAAGAAACGCAGC]
[+] EMBL BM627834 [CCGTTATTTTCCAACAAGAGCAAAACACTTTCAAACGAATGCGTTTAATGTTGGAAAAATGACACATAAAAACGCGGGAACCCTTACACGAAGAATGCTTGATTAAATCCCCTAAAACATGAAGCTTAGAGTGTAATATCTGAACCACAGGTATTAGTAATTGTCGCAACAAGTCGAAGCATTGTGACATGCTCGGAGAGGAAGATAGGTAACAGGAAACATTAGACATTGAAGAAAATTAGCCTGTTCGATGATAATTTCAACAGCTCGTCGAAATGTTACACTTACGAAGAGCAGCAACATACTACAGCAAAGTAAGTTTATTGAAATTACTGAATGTGTAACAACTGGAACATAGAGTTTGAAAATGCAACAGTCAAACAATCCAACTGAAAGAGCGAAACAGAACGAACAAGCAAACACATTCGAAGAGAGTAGAATGAACAAGTCGTTTGATAAATTTGTAAAACCCTACTACATGTGTAACGTACGTGCATAATTTGCTTAACCTTATCTACCAACTAAGTAAGTGTGTTTGTGTATGTGTGTGCGTGCTATGAAGAAACGCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7356#0 GTTGTCTGCGCGATGGGAGACGTTCACTTACGACACTTGGCAAAACGAAATGCATCAACC 60
consensus_7356#2 ------------------------------------------------------------
consensus_7356#1 ------------------------------------------------------------
consensus_7356#0 TCTATCGGGGGTAGCAGCAACTTGCTTGCCACTTTAAAATAGTAATGTATGCTCGCCTCT 120
consensus_7356#2 ------------------------------------------------------------
consensus_7356#1 ------------------------------------------------------------
consensus_7356#0 CTTTTGGGAAAACGAGGAAAAATGATAAAACACACCAAGGCTAGATTACGGGGCGGTTCT 180
consensus_7356#2 ------------------------------------------------------------
consensus_7356#1 ------------------------------------------------------------
consensus_7356#0 TATTGTGTTTGTGTTAAACGTTATGCAAACACACTTGGTTGAGGAAATGAAAAAGAAAAA 240
consensus_7356#2 ------------------------------------------------------------
consensus_7356#1 -----------------------------------GCAAGAATCGGCACGATGGACGACA 25
consensus_7356#0 CAGGGCCTCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATCCA 300
consensus_7356#2 ------------------------------------------------------------
consensus_7356#1 CTTGGCAAAACGAAATGCATCAACCTCTATCGGGGGTAGCAGCAGCTTGCTTGCCACTTT 85
consensus_7356#0 GCGTTACTATTTGCATACACTTCGTACAGTCGGGAAAAGATCAGATCTCTTTGAACTTGC 360
consensus_7356#2 ------------------------------------------------------------
consensus_7356#1 AAAATAGTAATGTATGCTCGCCTCTCTTTTGGGAAAACGAAATGCATCAACCTCTATCGG 145
consensus_7356#0 CACAAACAGAGAACGTCTGTTGTAGAACAACACGAGACGGTGTTGCGTTTTGTGTACCAG 420
consensus_7356#2 ------------------------------------------------------------
consensus_7356#1 GGGTAGCAGCAGCTTGCTTGCCACTTTAAACATAGTAATGTATGCTCGCCTCTCTTTTGG 205
consensus_7356#0 TATTTATTTTCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTTATAATTTTCC 480
consensus_7356#2 ------------------------------------------------CCGTTATTTTCC 12
consensus_7356#1 GAAAACGAGGAAAAATGATAAAACACACCAAGGGCTAGATTACGGGGCCGGTTCTTATTG 265
* ** *
consensus_7356#0 AACAAGAGCAAAACACTTTCAAACGAATGCGTTTAATGTTGGAAAAATGACGCATAAAAA 540
consensus_7356#2 AACAAGAGCAAAACACTTTCAAACGAATGCGTTTAATGTTGGAAAAATGACACATAAAAA 72
consensus_7356#1 TGTTTGTGTTAAACGTTAT---GCAAACACACTTG--GTTGAGGAAATGAAAAAGGAAAA 320
* * **** * * * ** * ** **** ****** * ****
consensus_7356#0 CGCGGGAACCCTTAC--ACGAAGAATGCT-TGATTAAATC--TCCTTAAACATGAAGCTT 595
consensus_7356#2 CGCGGGAACCCTTAC--ACGAAGAATGCT-TGATTAAATC--CCCTAAAACATGAAGCTT 127
consensus_7356#1 -ACAGGGCCCCTAAATAATGATCCACTCTGCCGTAAGATTGTCGCTGTAGGAAGAAAATC 379
* ** **** * * ** * ** * * ** ** * * *** *
consensus_7356#0 AGAGTGTAATATCTCAACCACAGGTATTAGTAATTGTCGCAACAAGTCGAAGCATTGTG- 654
consensus_7356#2 AGAGTGTAATATCTGAACCACAGGTATTAGTAATTGTCGCAACAAGTCGAAGCATTGTG- 186
consensus_7356#1 CAGCGTTACTATTTGCAT-ACACTACTTCGTACAGTCGGGATCAGATCAAATCTCTTTGC 438
** *** * * *** ** *** * * ** ** ** * * **
consensus_7356#0 ACATGCTCGGAGAGGAAGATAGGTAACAGGAA--ACATTAGACATTGAAGAAAATTAGC- 711
consensus_7356#2 ACATGCTCGGAGAGGAAGATAGGTAACAGGAA--ACATTAGACATTGAAGAAAATTAGC- 243
consensus_7356#1 ACTTGCC-----ACAAACGTCTGTTGTAGGAACAACACGAGACGGTGTTGCGTNTTGTGT 493
** *** * ** * ** ***** *** **** ** * **
consensus_7356#0 -CTGTTCGATGATAATTTCAACAGCTCGTCGAAATGTTACACAAACGAAGAGCAGCAACA 770
consensus_7356#2 -CTGTTCGATGATAATTTCAACAGCTCGTCGAAATGTTACACTTACGAAGAGCAGCAACA 302
consensus_7356#1 ACCAGTATTTATTTGCTACACAAACGCATCGAACCCTTTTGGCTTGGTTTGGTTG-ATTT 552
* * * * * ** * * * ***** ** * * * *
consensus_7356#0 TACTACAGCAA-AGTAAGTTTATTGAAATTACTGAATGTGTAAC-AACTGGGAACATAGA 828
consensus_7356#2 TACTACAGCAA-AGTAAGTTTATTGAAATTACTGAATGTGTAAC-AACTGG-AACATAGA 359
consensus_7356#1 TCCAACAAGAGCAANAAACACTTTCAAACGAATGCGTNTGCACCTGGTNGGGAACANATG 612
* * *** * * ** ** *** * ** * ** * * ** **** *
consensus_7356#0 GT---TTAAAAATGCAACGGTCAAACAATCCAACTGAAAGAGCGAAAC--AGAACGAACA 883
consensus_7356#2 GT---TTGAAAATGCAACAGTCAAACAATCCAACTGAAAGAGCGAAAC--AGAACGAACA 414
consensus_7356#1 ACCCATTAGAAACGCGGGGAAACCTTGACACGGAAGAATGGNTTGATTTAANAATTGCCC 672
** *** ** * * *** * * * ** *
consensus_7356#0 AGCAAACACATTCGAAGAGAGTAGAATGAACAAGTCGTTTGATAAATTTGTAAAACCCTA 943
consensus_7356#2 AGCAAACACATTCGAAGAGAGTAGAATGAACAAGTCGTTTGATAAATTTGTAAAACCCTA 474
consensus_7356#1 CTTAGAAACACGCATTGGAAAGGCTTTCAGGAAGTTGTACATTGAATATCTGGAAAGCCC 732
* * *** * * * * * **** ** * *** * * ** *
consensus_7356#0 AAAAAAAAAAAAAAAAAAAAAAAAAAATGGGGGGGGGGGGGGGGGGG------------- 990
consensus_7356#2 CTACATGTGTAACGTACGTGCATAATTTGCTTAACCTTATCTACCAACTAAGTAAGTGTG 534
consensus_7356#1 CACAAAGGGNNATACAGGGACACATTGGGTCGGGCAANAACAAGAGGGTCCGAAAGCNCA 792
* * * * * *
consensus_7356#0 -------------------------------------
consensus_7356#2 TTTGTGTATGTGTGTGCGTGCTATGAAGAAACGCAGC 571
consensus_7356#1 NTTG-GTGGACATTGGCGCTCCGGGANNGAAG----- 823
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||