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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 840 fasta sequence
[CCGCGAAAACGGGCCGTCTATATATGGATTTCCTGCTTGTTCCCGCACACTCCTGTCGGCCATGTTTTCGGACGGCGCAGTCCTTTATAAGTTCTAAACAAAGTGTAACCCGCTCCGCCATCAACCGTCGGTGCCGTAGGTGTGATTGCAA-GAACCTCCGCCCGCTGCAGAACGACCGGAAG-AAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCG-TCGCCG-TCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGCGGTGTAACGCCCTGCTTCGTTAGAACGGAATAACAGCACAGCGACAACTGGTCGGACGGAAACCCCGTCCCGCGGGGACCTGTCTATTTGGTCGGCTGAAGTGAAA-C---C--CCCGC--CCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA-ATCATAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTTGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAG]
[+] EMBL BM614728 [CCGCGAAAACGGGCCGTCTATATATGGATTTCCTGCTTGTTCCCGCACACTCCTGTCGGCCATGTTTTCGGACGGCGCAGTCCTTTATAAGTTCTAAACAAAGTGTAACCCGCTCCGCCATCAACCGTCGGTGCCGTAGGTGTGATTGCAA GAACCTCCGCCCGCTGCAGAACGACCGGAAG AAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCG TCGCCG TCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGCGGTGTAACGCCCTGCTTCGTTAGAACGGAATAACAGCACAGCGACAACTGGTCGGACGGAAACCCCGTCCCGCGGGGACCTGTCTATTTGGTCGGCTGAAGTGAAA C C CCCGC CCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA ATCATAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTTGCAGAAAGAA ]
[+] EMBL AL934878 [ gcccgaggtAAC AAGTGTAACCCGCTCCGCCATC ACCGTTGGTGCCGTANGTGCGATTGCAACGAACCTCCGCCCGCTGCAGAACGACCGGAAGCAAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCNGCGCCATCAGAAACACAACACTACTCCAGCGTCATCGCTCGCCGCTCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCG GAGTCCGTCGA TTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCAACAACTGGTCGGACGGAAACCACGTCCCGCGGGGACCTGCCTATTTGGTCGGCTGAAGTGAAA T CAAACAGCCACCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGAACATCAGTACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAG CAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGA TCGGCCAAGCGGTTCTCCATACACGACGCG TCGAGGAGG AACGGACGAGGTAA TAAGGTGTACG ]
[+] EMBL BM606648 [ ccgCGCTGCAGAACGACCGGAAG AAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCG TCGCCG TCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGCGGTGTAACGCCCTGCTTCGTTAGAACGGAATAACAGCACAGCGACAACTGGTCGGACGGAAACCCCGTCCCGCGGGGACCTGTCTATTTGGTCGGCTGAAGTGAAA C C CCCGC CCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA ATCATAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTTGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAG]
[+] EMBL BM619203 [ ccgG TCGCCG TCTCGCCGTCAACAAGCGTAAATCAGGTGTGAAAATCG GAGTCCGTCGA TTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCGACAACTGGTCGGACGGAAACCACGTCCCGCGGGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAAC AGCCC CCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA ATCAGAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTAAGGTGTACGGCTCG ]
consensusID : consensus_7376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 822 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAGGAGTACGGGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAAACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTGATCATCGGCATCGGACTGATCGTGATGGGTGCGTACGCGCTGGTCGAACCACACAACGGATCGCAGGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTGCTTCGTCCCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGACTTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACCAGCGCGGGAAGGAAGTACACCGGCAGTAAGAGGTGAGACCGAATTTTCGACTGTGCGTTCGGGGTTTCGGGGGAAGGCCAGGGTCAACGGCGGCAGGGGCCACGCCATTTAGCTTAGTTTTTTGCGGCAGTTTTATAGAATTACTTACGATAACAACGGGCAAAAGACTTGCGAACAAGCGGTTTGTTCGCGGTTTACCTTTTTCTACGCTACGCTATCTTGTTTTCGTATGCCGAGAAAGGATCTAGTAGGCTAGTAGTGAGAGAAAACATGTAGAAGATTCATCACGTTTTCCTTTCCCAAAGCATAATGTGAAGAATAGCGAATGATGATGATGATGA]
[+] EMBL BM576895 [CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAGGAGTACGGGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAAACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTGATCATCGGCATCGGACTGATCGTGATGGGTGCGTACGCGCTGGTCGAACCACACAACGGATCGCAGGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTGCTTCGTCCCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGACTTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACCAGCGCGGGAAGGAAGTACACCGGCAGTAAGAGGTGAGACCGAATTTTCGACTGTGCGTTCGGGGTTTCGGGGGAAGGCCAGGGTCAACGGCGGCAGGGGCCACGCCATTTAGCTTAGTTTTTTGCGGCAGTTTTATAGAATT ]
[+] EMBL BX628309 [ CGGGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAAACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTGATCATCGGCATCGGACTGATCGTGATGGGTGCGTACGCGCTGGTCGAACCACACAACGGATCGCAGGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTGCTTCGTCCCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGACTTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACCAGCGCGGGAAGGAAGTACACCGGCAGTAAGAGGTGAGACCGAATTTTCGACTGTGCGTTCGGGGTTTCGGGGGAAGGCCAGGGTCAACGGCGGCAGGGGCCACGCCATTTAGCTTAG TTTTTGCGGCAGTTTTATAGAATTACTTACGATAACAACGGGCAAAAGACTTGCGAACAAGCGGTTTGTTCGCGGTTTACCTTTTTCTACGCTACGCTATCTTGTTTTCGTATGCCGAGAAAGGATCTAGTAGGCTAGTAGTGAGAGAAAACATGTAGAAGATTCATCACGTTTTCCTTTCCCAAAGCATAATGTGAAGAATAGCGAATGATGATGATGATGA]
consensusID : consensus_7376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[CCGAGAACGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGCCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCGTCAACAAGCGTAAATGTATGTTAATGAGCCTCTTCATCTGCCGCTCCGTTTAGCGTACAGCGTTTCCTCTGTCCCACTACAGCAGGTGTGAAAATCGGAGTCCGTCGATTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCGACAACTGGTCGGACGGAAACCACGTCCCGCGGGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAACAGCCCCCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCAGAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGG]
[+] EMBL BM601718 [CCGAGAACGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGCCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCGTCAACAAGCGTAAATGTATGTTAATGAGCCTCTTCATCTGCCGCTCCGTTTAGCGTACAGCGTTTCCTCTGTCCCACTACAGCAGGTGTGAAAATCGGAGTCCGTCGATTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCGACAACTGGTCGGACGGAAACCACGTCCCGCGGGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAACAGCCCCCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCAGAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7376#0 CCGCGAAAACGGGCCGTCTATATATGGATTTCCTGCTTGTTCCCGCACACTCCTGTCGGC 60
consensus_7376#2 ------------------------------------------------------------
consensus_7376#1 -----------------CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGACGAGGTAAT 43
consensus_7376#0 CATGTTTTCGGACGGCGCAGTCCTTTATAAGTTCTAAACAAAGTGTAACCCGCTCCGCCA 120
consensus_7376#2 ------------------------------------------------------------
consensus_7376#1 TAAGGTGTACGGCTCGACCGTCATCAGTACAC-CGATGCGGGCGAAGGCGCGCTCCCCGG 102
consensus_7376#0 TCAACCGTCGGTGCCGTAGGTGTGATTGCAAGAACCTCCGCCCGCTGCAGAACGACCGGA 180
consensus_7376#2 ----------------------------------------------------------CC 2
consensus_7376#1 ACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAGGAGTACG 162
consensus_7376#0 AGAAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGT--CCGTCCTTGCTGAGCA 238
consensus_7376#2 GAGAACGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGC--CCGTCCTTGCTGAGCA 60
consensus_7376#1 GGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAA 222
* * * *** ** * ** * * *** *** * *
consensus_7376#0 GCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCTTCG 298
consensus_7376#2 GCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCGTCA 120
consensus_7376#1 ACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTG-ATCATCGGCATCGGACTGATCGTG 281
*** ** * * * ** ** * * ****** * ** *
consensus_7376#0 ACAAGCGTAAAT------------------------------------------------ 310
consensus_7376#2 ACAAGCGTAAATGTATGTTAATGAGCCTCTTCATCTGCCGCTCCGTTTAGCGTACAGCGT 180
consensus_7376#1 ATGGGTGCGTACG------------------CGCTGGTCGAACCACACAACGGATCGCA- 322
* * * *
consensus_7376#0 -------------------CAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGC 351
consensus_7376#2 TTCCTCTGTCCCACTACAGCAGGTGTGAAAATCGGAG--TCCGTCGATTG---TTCTAGC 235
consensus_7376#1 -----------------GGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTG---CTTCGTC 362
* * *** *** * * ** ** * *
consensus_7376#0 GGTGTAACGCCCTGCTTCGT-TAGAACGGAATAACAGC--ACAGCGACAACTGGTCGGAC 408
consensus_7376#2 GGTGTAACGCCCTGCTTCGT-TACAACGGAATAACAGC--GCAGCGACAACTGGTCGGAC 292
consensus_7376#1 CCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGAC 422
* ** * * **** ** * * * * * ** * ** ** * * ***
consensus_7376#0 GGAAACCCCGTCCCGCG------GGGACCTGTCTATTTGGTCGGCTGAAGTGAAACCCC- 461
consensus_7376#2 GGAAACCACGTCCCGCG------GGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAA 346
consensus_7376#1 TTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACC- 481
*** * * **** * * * * ** * ** * **
consensus_7376#0 ---CGCCCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAG 518
consensus_7376#2 CAGCCCCCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAG 406
consensus_7376#1 -AGCGCGGGAAGGAAGTACACCGG--CAGTAAGAGGTGAGACCGAATTTTCGA--CTGTG 536
* * * ** ** * * ** * ** * * * ** * *
consensus_7376#0 CGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCATAACAATCGAC 578
consensus_7376#2 CGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCAGAACAATCGAC 466
consensus_7376#1 CGTTCGGGGTTTCGGGGGAAGG-CCAGGGTCAAC-GGCGGCAGGGGCCACGCCATTTAGC 594
** * ** * * ** ** ** *** * * ** ** ** * *
consensus_7376#0 TAG--CAGCAGCAGCAGTCC-ACGGCTTTGCAGAAAGAACACAGCCAAGATGAGCCTACA 635
consensus_7376#2 TAG--CAGCAGCAGCAGTCC-ACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACA 523
consensus_7376#1 TTAGTTTTTTGCGGCAGTTTTATAGAATTACTTAC-GATAACAACGGGCAAAAGACTTGC 653
* ** ***** * * * * * ** *** * * ** **
consensus_7376#0 GAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTC-GGCCAAGCGGTTCTC-CATA 693
consensus_7376#2 GAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCCGGCCAAGCGGTTCTC-CATA 582
consensus_7376#1 GAACAAGCGGTTTGTTCGCGGTTTACCTTTTTCTACGCTACGCTATCTTGTTTTCGTATG 713
**** * *** ** * ** * *** ** **
consensus_7376#0 C-ACGACGCGTTCGAGGAGGAAACGGACGAGGTAA------TT-AAGGTGTACGGC-TCG 744
consensus_7376#2 C-ACGACGCGTTCGAGGAGGAAACGGACGAGGTAA------TTTAAGGTGTACGGC-TCG 634
consensus_7376#1 CCGAGAAAGGATCTAGTAGGCTAGTAGTGAGAGAAAACATGTAGAAGATTCATCACGTTT 773
* ** * ** ** *** * *** ** * *** * * * *
consensus_7376#0 ACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGA 804
consensus_7376#2 ACCGTCATCAGTACACCGATGCGGGCGAAGG----------------------------- 665
consensus_7376#1 TCCTTTCCCAAAGCAT-AATGTGAAGAATAGCGAATGATGATGATGATGA---------- 822
** * ** ** *** * * *
consensus_7376#0 ATACACGATCAAAGGGATAGTGATTCGCTGATACAG 840
consensus_7376#2 ------------------------------------
consensus_7376#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||