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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 975 fasta sequence
[TTCAGCGGCAGGACGGGAAACGCAAAAGCATCAGCAACTCGTTCTCCAACATCTTCCGGCGGCCCGGCTCCGTGGGATCGAGCAATAGTAACGGTTTAAACCACTCACCGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCATTATTACCGTTTAGTGTAACAAGTAAATGCTATCCTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGTAACCGTTAATATATACATCTAGACACTGGAAGTAGATGTA]
[+] EMBL BX624160 [TTCAGCGGCAGGACGGGAAACGCAAAAGCATCAGCAACTCGTTCTCCAACATCTTCCGGCGGCCCGGCTCCGTGGGATCGAGCAATAGTAACGGTTTAAACCACTCACCGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCAT ]
[+] EMBL BX629108 [ GCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCG ]
[+] EMBL BX617968 [ GAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCATTATTACCGTTTAGTGTAACAAGTAAATGCTATCCTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGTAACCGTTAATATATACATCTAGACACTGGAAGTAGATGTA]
[+] EMBL BX609199 [ AAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCAT TTACCGTTTAGTGT AGAAGTAAATGCTATCCTAACGAACAAGCGAACAATGCCAAACAAAGAGAAACTATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGTAACC ]
consensusID : consensus_7404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence
[AGAATTCCCGAGGTTTAACAGTGCATTATGATGCTATCGCGCAGCAGGTTCACGCNTGCNGCANCCACCAGCCACCGGCCAACGAACTGCTAGCTGAAAACGAAAGTACGACGTAATGGGTGGCTGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTGTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTATATTCTTATATTAGAAAAAAACAGTTCATAGGTACGGGGAGGGGATCGTTTGTAAAANAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAAATAGTGGAGAAGGAAANATTTGTCTTTTCTAAATGTAGGGCAACCGCCTNTTAATTTAACAAAAAAGTAATNTTACATCGAGCGAATTTACCTGGTCTGTGNTTATAACATAAACAAGAANTAAATATACGGAGCACCAAAATTTTCATTCAANAAACTCNCCCACCCATTTAAGGTTACATGGTTCCCCCCATATGGGGCTGGTAAACACATTNAACCGAGGAACNAAAGGAACGAAAAACCCACACAAATGGATTAATTAGTAAAACAGACACNTCCTAGTAANTGTAATCAGGGAGNAATAATAAGAATNNACGAACAATAGTA]
[+] EMBL AL697349 [AGAATTCCCGAGGTTTAACAGTGCATTATGATGCTATCGCGCAGCAGGTTCACGCNTGCNGCANCCACCAGCCACCGGCCAACGAACTGCTAGCTGAAAACGAAAGTACGACGTAATGGGTGGCTGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTGTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTATATTCTTATATTAGAAAAAAACAGTTCATAGGTACGGGGAGGGGATCGTTTGTAAAANAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAAATAGTGGAGAAGGAAANATTTGTCTTTTCTAAATGTAGGGCAACCGCCTNTTAATTTAACAAAAAAGTAATNTTACATCGAGCGAATTTACCTGGTCTGTGNTTATAACATAAACAAGAANTAAATATACGGAGCACCAAAATTTTCATTCAANAAACTCNCCCACCCATTTAAGGTTACATGGTTCCCCCCATATGGGGCTGGTAAACACATTNAACCGAGGAACNAAAGGAACGAAAAACCCACACAAATGGATTAATTAGTAAAACAGACACNTCCTAGTAANTGTAATCAGGGAGNAATAATAAGAATNNACGAACAATAGTA]
consensusID : consensus_7404#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence
[CCGCTACAGTGTGGGCAGCGAGCGACAGCTAAACCTTGCCATCGGGGCCGTACTGCTGGACGAGTGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGGAGCAGGTTCAGCAGCAGCAGCAGCAGCCACCGGCAAGAACTGCTAGCTGAAAACGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAAGGAAAGAGAAGGAAGAAATTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTG]
[+] EMBL BM586615 [CCGCTACAGTGTGGGCAGCGAGCGACAGCTAAACCTTGCCATCGGGGCCGTACTGCTGGACGAGTGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGGAGCAGGTTCAGCAGCAGCAGCAGCAGCCACCGGCAAGAACTGCTAGCTGAAAACGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAAGGAAAGAGAAGGAAGAAATTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTG]
[+] EMBL BX617957 [ CGAGCGACAGCGAAACCTTGCCATCGGGGCCGTACGGCTGGACGAGGGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGGAGCAGGGTCAGCAGCAGCAGCAGCAGCCACCGGCAAGAACGGCTAGCTGAAAACGAAAGTACGACGTAGAAGGGGGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAACCAACCGAACGAAACTAAGCGAACGGCAGCGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7404#1 ------------------------------------------------------------
consensus_7404#2 CCGCTACAGTGTGGGCAGCGAGCGACAGCTAAACCTTGCCATCGGGGCCGTACTGCTGGA 60
consensus_7404#0 -----------------------------------------------------------T 1
consensus_7404#1 -------------AGAATTCCCGAGGT------TTAACAGTGCATTATGATGCTATCGCG 41
consensus_7404#2 CGAGTGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGG- 119
consensus_7404#0 TCAGCGGCAGGACGGGAAACGCAAAAG----CATCAGCAACTCGTTCTCCAAC-ATCTTC 56
* * ** * ** * * ***
consensus_7404#1 CAGCAGGTTCACGCNTGCNGCANCCACCAGCCACCGGCCAACGAACTGCTAGCTGAAAAC 101
consensus_7404#2 -AGCAGGTTCA-GCA-GCAGCAGC-AGCAGCCACCGGCAA--GAACTGCTAGCTGAAAAC 173
consensus_7404#0 CGGC-GGCCCGGCTCCGTGGGATCGAGCAATAGTAACGGTTTAAACCACTCAC------C 109
** ** * * * * * * ** *** ** * *
consensus_7404#1 GAAAGTACGACGTA-ATGGGTGGCTGCGCGCGCGAAAGAACAACGATTTACAATTAAATT 160
consensus_7404#2 GAAAGTACGACGTAGATGGGTGGC-GCGCGCGCGAAAGAACAACGATTTACAATTAAATT 232
consensus_7404#0 GAAAGTACGACGTAGATGGGTGGC-GCGCGCGCGAAAGAACAACGATTTACAATTAAATT 168
************** ********* ***********************************
consensus_7404#1 AACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCC 220
consensus_7404#2 AACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCC 292
consensus_7404#0 AACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCC 228
************************************************************
consensus_7404#1 CATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTG 280
consensus_7404#2 CATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTG 352
consensus_7404#0 CATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTG 288
************************************************************
consensus_7404#1 TGTAGATGTGTT---TGTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTATA 337
consensus_7404#2 TGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTT- 411
consensus_7404#0 TGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTT- 347
************ * **************************************** *
consensus_7404#1 TTCTTATATTAGAAAAAAACAGTTCATAGGTACGGGGAGGGGATCGTTTGTAAAANAAAC 397
consensus_7404#2 -TCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGGAGGGGATCGTTTGTAAAACAAAC 470
consensus_7404#0 -TCTTATATTAGAAAAAAACAGTTCATAGGTA-GGGGAGGGGATCGTTTGTAAAACAAAC 405
******************************* ********************** ****
consensus_7404#1 GAGTCAAGAAA-GGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAAATAGTG 456
consensus_7404#2 GAGTCAAGAAAAGGAAAGAGAAGGAAGAAAT-------TAACGAACAAGCGAACAAGGCC 523
consensus_7404#0 GAGTCAAGAAA-GGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAA-ATAGTG 463
*********** ******************* ** * **** ** * *
consensus_7404#1 GAG-AAGGAAANATTTGTCTTTTCTAAATGTAGGGCAACCGCCTNTTAATTTAACAAAAA 515
consensus_7404#2 AAACAAAGAGAAACTATTGCAACCTG---------------------------------- 549
consensus_7404#0 GAG--AAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGC--TTTAATTTAACAAAAA 519
* * * * * * * **
consensus_7404#1 AGTAATNTTACATCGAGCGAATTTACCTGGTCTGTGNTTATAACATAAACAAGAANTAAA 575
consensus_7404#2 ------------------------------------------------------------
consensus_7404#0 AGTAATTTAA--TCGCGCGAATTTACCTG-TCTGCTGCTTTTTTTTAAAGAATAATTCGC 576
consensus_7404#1 TATACGGAGCACCAAAATTTTCATTCAANAAACTCNCCCACCCATTTAAGGTTACATGGT 635
consensus_7404#2 ------------------------------------------------------------
consensus_7404#0 CAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGAC 636
consensus_7404#1 TCCCCCCATATGGGGCTGGTAAACACATTNAACCGAGGAACNAAAGGAACGAAAAACCCA 695
consensus_7404#2 ------------------------------------------------------------
consensus_7404#0 GAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTT- 695
consensus_7404#1 CACAAATGGATTAATTAGTAAAACAGACACNTCCTAGTAANTGTAATCAGGGAGNAATAA 755
consensus_7404#2 ------------------------------------------------------------
consensus_7404#0 TACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCA 755
consensus_7404#1 TAAGAATNNACGAACAATAGTA-------------------------------------- 777
consensus_7404#2 ------------------------------------------------------------
consensus_7404#0 TTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCATTATTACCGTTT 815
consensus_7404#1 ------------------------------------------------------------
consensus_7404#2 ------------------------------------------------------------
consensus_7404#0 AGTGTAACAAGTAAATGCTATCCTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACT 875
consensus_7404#1 ------------------------------------------------------------
consensus_7404#2 ------------------------------------------------------------
consensus_7404#0 ATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGT 935
consensus_7404#1 ----------------------------------------
consensus_7404#2 ----------------------------------------
consensus_7404#0 AACCGTTAATATATACATCTAGACACTGGAAGTAGATGTA 975
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||