These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1138 fasta sequence [CCGATTGTTTACTACGGAACATTCAAGAAATTACAACACACTTTGTACGTTTTGTGCATAATTTCGCCGCTCGAATCTTTAAAACATTATCGTGCCTTTTTATTGCAAAGAAAAATGGACGTCTTGGCGACGTGTCGACTGTGCCTCGAACCGTACGCACCCGTAAATGGCAGTTTCTGTCTGAGCAACGACTCCTTTCAAGCGGCGATACAGCGTGTATTCTCCTTCGAGCTTAAACCGGAACAAAGCCTGCCCGAATATGCATGTGGCATGTGCTCGATCAAAGTTTGGGAGTTCTTCTCCTTCAGCAAGTTGGTAGAGGAGAACCAACAAAAACTGCTGTGTTTGGTGCAGGCGAATGTGGAAGAGTGCAACACCCTAATGGAGGACAAAAAGAACGTTATCATCATTGTTGATGACACCGATAATGTTGCGGCGGCGAATAGCGCGCCCCCAAACGCTGCCATTGATGACGGGCCGCAGACCGAGGTCAGTGCTGGAGGTGCTGGCACGCCCAGGTTGCAAGATGGCACAACAGTGGAGAGAGTGGCTTCGAAAACAGTTGGGACGATTGATGGCATTGAGCTTGATGAGCATATCCTGCAAGAGCTGGAAAATGAAGACACCGAAAATACTAGACCGCGTGACGTGAACAAGAACTTGGAAAAGCCTCGTAAAACCGCAAAAATACTATTACGATCTATTTTTATGAAAAACAAACTCAAATCTCTATCTTGCGGTCGGTGTAAGCAATCATTTGCCCAAAAGAGTCAGCTAGCTAGCCACAGTTGCAGCTCGCCTCGCTCTAAAATACGATCCGTTGTGCAGGCGAACGGCGGCATGGCGCAAAGTACCGGCGATCGGAAGCAGTGTAACACGGAACCTCATGAGCAAAGCGATGCAGAAGACGCTTCGGACAATGATCTCCAGGTTCTCGCATTATGTAGAGCAATGCTCGATACTACTGACTCAAGCCTGAGATCGAATGAGGAAGAAGAAGCATCCAATCTGCCACCGGCCGATGGAGCGTCCTTCCCATGCGATCAATGCGAACGTACCTTTCCACCAAAAAGCAGCGTACTAAGCACCAGTACCATCACAAAACGACAGAATGTCCGATCTGTAGGAAAGAGATAAA] [+] EMBL BM633872 [CCGATTGTTTACTACGGAACATTCAAGAAATTACAACACACTTTGTACGTTTTGTGCATAATTTCGCCGCTCGAATCTTTAAAACATTATCGTGCCTTTTTATTGCAAAGAAAAATGGACGTCTTGGCGACGTGCCGACTGTGCCTCGAACCGTACGCACCCGTAAACGGCAGTTTCTGTCTGAGCAACGACTCCTTTCAAGCGGCGATACAGCGTGTATTCTCCTTCGAGCTTAAACCGGAACAAAGCCTGCCCGAATATGCATGTGGCATGTGCTCGATCAAAGTTTGGGAGTTCTTCTCCTTCAGCAAGTTGGTAGAGGAGAACCAACAAAAACTGCTGTGTTTGGTGCAGGCGAATGTGGAAGAGTGCAACACCCTAATGGAGGACAAAAAGAACGTTATCATCATTGTTGATGACACCGATAATGTTGCGGCGGCGAATAGCGCGCCCCCAAACGCTGCCATTGATGACGGGCCGCAGACCGAGGTCAGTGCTGGAGGTGCTGGCACGCCCAGGTTGCAAGATGGCACAACAGTGGAGAGAGTGGCTTCGAAAACAGTTGGGACGATTGATGGCATTGAGCTTGATGAGCATATCCTGCAAGAGCTGGAAAATGAAGACACCGAAAATACTAGACCGCGTGACGTGAACAAGAACTTGGAAAAGCCTCGTAAAACCGCAAAAATACTATTACGATCTATTTTT ] [+] EMBL CNS08ZNN [ TTTTCTTTTGATCATTCAATAAATTACAACACACTTTGTACGTTTCGTGCATAATTTCGCCGCTCGAATCTTTAAAACATTATCGTGCCTTTTTATTGCAAAGAAAAATGGACGTCTTGGCGACGTGTCGACTGTGCCTCGAACCGTACGCACCCGTAAATGGCAGTTTCTGTCTGAGCAACGACTCCTTTCAAGCGGCGATACAGCGTGTATTCTCCTTCGAGCTTAAACCGGAACAAAGCCTGCCCGAATATGCATGTGGCATGTGCTCGATCAAAGTATGTGAGTTCTTCTCCTTCAGCAAGTTGGTAGAGGAGAACCAACAAAAACTGCTGTGTTTGGTGCAGGCGAATGTGGAAGAGTGCAACACCCTAATGGAGGACAAAAAGAACGTTATTATTATTGTGGATGACACCGATAATGTTGCGGCGGCGAATAGCGCGCCCCCAAACGCTGCCATTGATGACGGGCCGCAGACCGAAGTCAGTGCTGGAGGTGCTGGCACGCCCAGGTTGCAAGATGGCACAACAGTGGAGAGAGTGGCTTCGAAAACAGTTGGGACGATTGATGGCATTGAGCTTGATGAGCATATCCTGCAAGAACTGGAAAATGAAGACACCGAAAATACTAGACCGCATGACGTGAACAAGAACTTGGAAAAGCCTCGTAAAACCGCAAAAATACTATTACGATCTATTTTTATGAAAAACAAACTCAAATCTCTATCTTGCGGTCGTTGTAAGCAATCATTTGCCCAAAAGAGTCAGCTAGCTGGCCACAGTTGCAGCTCGCCTCGCTCTAAAATACGATCCGTTGTGCAGGCGAACGGCGGCATGGCGCAAAGTACCGGCGATCGGAAGCAGTCTAACACG ] [+] EMBL CNS08P1N [ GGACGTCTTGGCGACGTGTCGACTGTGCCTCGAACCGTACGCACCCGTAAATGGCAGTTTCTGTCTGAGCAACGACTCCTTTCAAGCGGCGATACAGCGTGTATTCTCCTTCGAGCTTAAACCGGAACAAAGCCTG ] [+] EMBL CNS08LTT [ AATCTCTATCTTGCGGTCGGTGTAAGCAATCATTTGCCCAAAAGAGTCAGCTAGCTAGCCACAGTTGCAGCTCGCCTCGCTCTAAAATACGATCCGTTGTGCAGGCGAACGGCGGCATGGCGCAAAGTACCGGCGATCGGAAGCAGTGTAACACGGAACCTCATGAGCAAAGCGATGCAGAAGACGCTTCGGACA ] [+] EMBL CNS08LX9 [ CTCTATCTTGCGGTCGGTGTAAGCAATCATTTGCCCAAAAGAGTCAGCTAGCTAGCCACAGTTGCAGCTCGCCTCGCTCTAAAATACGATCCGTTGTGCAGGCGAACGGCGGCATGGCGCAAAGTACCGGCGATCGGAAGCAGTGTAACACGGAACCTCATGAGCAAAGCGATGCAGAAGACGCTTCGGACAATGATCTCCAGGTTCTCGCATTATGTAGAGCAATGCTCGATACTACTGACTCAAGCCTGAGATCGAATGAGGAAGAAGAAGCATCCAATCTGCCACCGGCCGATGGAGCGTCCTTCCCATGCGATCAATGCGAACGTACCTTTCCACCAAAAAGCAGCGTACTAAGCACCAGTACCATCACAAAACGACAGAATGTCCGATCTGTAGGAAAGAGATAAA] [+] EMBL CNS08LWR [ cattAAGACGCTTCGGACAATGATCTCCAGGTTCTCGCATTATGTAGAGCAATGCTCGATACTACTGACTCAAGCCTGAGATCGAATGAGGAAGAAGAAGCATCCAATCTGCCACCGGCCGATGGAGCGTCCTTCCCATGCTATCAATGCTAACGTATCTTT ] consensusID : consensus_7409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CCGCGGACGCGTGGGTCGAGCTTAAACCGGAACAAAGCCTGCCCGAATATGCATGTGGCATGTGCTCGATCAAAGTATGGGAGTTCTTCTCCTTCAGCAAGTTGGTAGAGGAGAACCAACAAAAACTGCTGTGTTTGGCGCAGGCGAATGTGGAAGAGTGCAACACCCTAATGGAGGACAAAAAGAACGTTATCATCATTGTGGATGACACCGATAATGTTGCGGCTGCGAATAGCGCGCCCCCAAACGCTGCCATTGATGACGGGCCGCAGACAGAGGTCAGTGCTAGTGGTACTGGCACGCCCAGGTTGGAAGATGGCACAACAGTGGAGAGAGTGGCTTCGAAAACAGTTGGGACGATTGATGGCATTGAGCTTGATGAGCATATCCTGCAAGAGCTGGAAAATGAAGACACCGAAAATACTAGACCGCGTGACGTGAACAAGAACTTGGAAAAGCCTCGTAAAACCGCAAAAATACTATTACGATCTATTTATATGAAAAACAAACTCAAATCTCTATCTTGCGGTCGGTGTAAGCAATCATTTGCCCAAAAGAGTCA] [+] EMBL BM613829 [CCGCGGACGCGTGGGTCGAGCTTAAACCGGAACAAAGCCTGCCCGAATATGCATGTGGCATGTGCTCGATCAAAGTATGGGAGTTCTTCTCCTTCAGCAAGTTGGTAGAGGAGAACCAACAAAAACTGCTGTGTTTGGCGCAGGCGAATGTGGAAGAGTGCAACACCCTAATGGAGGACAAAAAGAACGTTATCATCATTGTGGATGACACCGATAATGTTGCGGCTGCGAATAGCGCGCCCCCAAACGCTGCCATTGATGACGGGCCGCAGACAGAGGTCAGTGCTAGTGGTACTGGCACGCCCAGGTTGGAAGATGGCACAACAGTGGAGAGAGTGGCTTCGAAAACAGTTGGGACGATTGATGGCATTGAGCTTGATGAGCATATCCTGCAAGAGCTGGAAAATGAAGACACCGAAAATACTAGACCGCGTGACGTGAACAAGAACTTGGAAAAGCCTCGTAAAACCGCAAAAATACTATTACGATCTATTTATATGAAAAACAAACTCAAATCTCTATCTTGCGGTCGGTGTAAGCAATCATTTGCCCAAAAGAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7409#0 CCGATTGTTTACTACGGAACATTCAAGAAATTACAACACACTTTGTACGTTTTGTGCATA 60 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 ATTTCGCCGCTCGAATCTTTAAAACATTATCGTGCCTTTTTATTGCAAAGAAAAATGGAC 120 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 GTCTTGGCGACGTGTCGACTGTGCCTCGAACCGTACGCACCCGTAAATGGCAGTTTCTGT 180 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 CTGAGCAACGACTCCTTTCAAGCGGCGATACAGCGTGTATTC-TCCTTCGAGCTTAAACC 239 consensus_7409#1 --------------------------------CCGCGGACGCGTGGGTCGAGCTTAAACC 28 ** * * * * ************* consensus_7409#0 GGAACAAAGCCTGCCCGAATATGCATGTGGCATGTGCTCGATCAAAGTTTGGGAGTTCTT 299 consensus_7409#1 GGAACAAAGCCTGCCCGAATATGCATGTGGCATGTGCTCGATCAAAGTATGGGAGTTCTT 88 ************************************************ *********** consensus_7409#0 CTCCTTCAGCAAGTTGGTAGAGGAGAACCAACAAAAACTGCTGTGTTTGGTGCAGGCGAA 359 consensus_7409#1 CTCCTTCAGCAAGTTGGTAGAGGAGAACCAACAAAAACTGCTGTGTTTGGCGCAGGCGAA 148 ************************************************** ********* consensus_7409#0 TGTGGAAGAGTGCAACACCCTAATGGAGGACAAAAAGAACGTTATCATCATTGTTGATGA 419 consensus_7409#1 TGTGGAAGAGTGCAACACCCTAATGGAGGACAAAAAGAACGTTATCATCATTGTGGATGA 208 ****************************************************** ***** consensus_7409#0 CACCGATAATGTTGCGGCGGCGAATAGCGCGCCCCCAAACGCTGCCATTGATGACGGGCC 479 consensus_7409#1 CACCGATAATGTTGCGGCTGCGAATAGCGCGCCCCCAAACGCTGCCATTGATGACGGGCC 268 ****************** ***************************************** consensus_7409#0 GCAGACCGAGGTCAGTGCTGGAGGTGCTGGCACGCCCAGGTTGCAAGATGGCACAACAGT 539 consensus_7409#1 GCAGACAGAGGTCAGTGCTAGTGGTACTGGCACGCCCAGGTTGGAAGATGGCACAACAGT 328 ****** ************ * *** ***************** **************** consensus_7409#0 GGAGAGAGTGGCTTCGAAAACAGTTGGGACGATTGATGGCATTGAGCTTGATGAGCATAT 599 consensus_7409#1 GGAGAGAGTGGCTTCGAAAACAGTTGGGACGATTGATGGCATTGAGCTTGATGAGCATAT 388 ************************************************************ consensus_7409#0 CCTGCAAGAGCTGGAAAATGAAGACACCGAAAATACTAGACCGCGTGACGTGAACAAGAA 659 consensus_7409#1 CCTGCAAGAGCTGGAAAATGAAGACACCGAAAATACTAGACCGCGTGACGTGAACAAGAA 448 ************************************************************ consensus_7409#0 CTTGGAAAAGCCTCGTAAAACCGCAAAAATACTATTACGATCTATTTTTATGAAAAACAA 719 consensus_7409#1 CTTGGAAAAGCCTCGTAAAACCGCAAAAATACTATTACGATCTATTTATATGAAAAACAA 508 *********************************************** ************ consensus_7409#0 ACTCAAATCTCTATCTTGCGGTCGGTGTAAGCAATCATTTGCCCAAAAGAGTCAGCTAGC 779 consensus_7409#1 ACTCAAATCTCTATCTTGCGGTCGGTGTAAGCAATCATTTGCCCAAAAGAGTCA------ 562 ****************************************************** consensus_7409#0 TAGCCACAGTTGCAGCTCGCCTCGCTCTAAAATACGATCCGTTGTGCAGGCGAACGGCGG 839 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 CATGGCGCAAAGTACCGGCGATCGGAAGCAGTGTAACACGGAACCTCATGAGCAAAGCGA 899 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 TGCAGAAGACGCTTCGGACAATGATCTCCAGGTTCTCGCATTATGTAGAGCAATGCTCGA 959 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 TACTACTGACTCAAGCCTGAGATCGAATGAGGAAGAAGAAGCATCCAATCTGCCACCGGC 1019 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 CGATGGAGCGTCCTTCCCATGCGATCAATGCGAACGTACCTTTCCACCAAAAAGCAGCGT 1079 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 ACTAAGCACCAGTACCATCACAAAACGACAGAATGTCCGATCTGTAGGAAAGAGATAAA 1138 consensus_7409#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||