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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 856 fasta sequence
[TGAAGCCCTCTCCCTTTAACCCTCCCCCTTCTTACTGTGGAATTATCGGCCGAGCCGACAGAGAATCTTTTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATCCTGTTCGTGAGGTAGACACGCACTAAAACCGCTAACCTTTCCGTTTAATTTGCCTTTGTTTTTTGTTCGGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCC-AAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAG-AAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGAAAACAAGTATTGTTAACGTATTTCTTTTTTATTATTATTATGACAAAATATACTTCGAAGCGAACAGAGGAACACACTAACACACCAGTTAATAATGAAATGTTTCTTTGCTTTGCTTTGCTTTCTAAATCTTTAAAAAAAA]
[+] EMBL BX608355 [TGAAGCCCTCTCCCTTTAACCCTCCCCCTTCTTACTGTGGAATTATCGGCCGAGCCGACAGAGAATCTTTTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATCCTGTTCGTGAGGTAGACACGCACTAAAACCGCTAACCTTTCCGTTTAATTTGCCTTTGTTTTTTGTTCGGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCC AAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAG AAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGAAAACAAGTATTGTTAACGTATTTCTTTTTTATTATTATTATGACAAAATATACTTCGAAGCGAACAGA ]
[-] EMBL AGA280724 [ TAATTTGCCTTTGTTTTGTGTTCGGTAGTTTTGGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCC AAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAG AAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGNTAACAGAAAAAA ]
[+] EMBL AGA285052 [ TCGGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCCAAAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAGAAAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGA ]
[-] EMBL AGA283762 [ GCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAGAAAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGAAAACAAGTATTGTTAACGTATTTCTTTTTTATTATTATTATGACAAAATATACTTCGAAGCGAACAGAGGAACACACTAACACACCAGTTAATAATGAAATGTTTCTTTGCTTTGCTTTGCTTTCTAAATCTTTAAAAAAAA]
consensusID : consensus_7412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 719 fasta sequence
[GCATCGTGTAAAAATGTTAAAAACTCCCCGTGGAATGGGGGAGGGGCTGGAAGGAGCTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGTCGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAACATGAAAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGATAAGCAACAC]
[+] EMBL BX607995 [GCATCGTGTAAAAATGTTAAAAACTCCCCGTGGAATGGGGGAGGGGCTGGAAGGAGCTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGTCGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAG ]
[+] EMBL BM641716 [ ccGGATAGGA GAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGGTACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGCGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAACATGAAAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGATAAGCAACAC]
consensusID : consensus_7412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[TTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAAAACATTAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGA]
[+] EMBL BX616989 [TTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAAAACATTAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7412#1 ------------------------------------------------------------
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 TGAAGCCCTCTCCCTTTAACCCTCCCCCTTCTTACTGTGGAATTATCGGCCGAGCCGACA 60
consensus_7412#1 ------------GCATCGTGTAAAAATGTTAAAAACTCCCCGTGG--AATGGGGGAGGGG 46
consensus_7412#2 ---------TTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTAC 51
consensus_7412#0 GAGAATCTTTTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTAC 120
* *** * * * * * * * * * *
consensus_7412#1 CTGGAAGGAGCTCTGTTCGCG--GCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAAT 104
consensus_7412#2 ATCCCTCCCATTCTGTTCGCG--GCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAAT 109
consensus_7412#0 ATCCCTCCCATCCTGTTCGTGAGGTAGACACGCACTAAAACCGCTAACCTTTCCGTTTAA 180
* ******* * * * ** **** ** * * *
consensus_7412#1 CGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTT 164
consensus_7412#2 CGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTT 169
consensus_7412#0 TTTGCCTTTGTTTTTTGTTC-GGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCA 239
* * ** *** *** * * * ** *****
consensus_7412#1 AAATTATTTATAC--ACGTCGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCAT- 221
consensus_7412#2 AAATTATTTATAC--ACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCAT- 226
consensus_7412#0 CGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAG-CTAGAAACGGTTAGGATCAAATC 298
** * * * * * * ** * * ** *** * * **
consensus_7412#1 -TATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGC 280
consensus_7412#2 -TATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGC 285
consensus_7412#0 CTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGG 358
* * * * * ** * * * * * * ** * ** *
consensus_7412#1 CTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAG----AATGGCCGGGGACCAGGGAT 336
consensus_7412#2 CTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAG----AATGGCCGGGGACCAGGGAT 341
consensus_7412#0 TTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCCAAAAAAGGGAAATGGAAAGC 418
* * ** ** * * * * ** ** ** *
consensus_7412#1 ACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTT 396
consensus_7412#2 ACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTT 401
consensus_7412#0 GTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAGAAAAAACAAACAGAAAGGAA 478
* *** ** ** ** * * * * * * * ****
consensus_7412#1 -TTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGA 455
consensus_7412#2 -TTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGA 460
consensus_7412#0 GCTTTCATACGTTTCGTTCATGTCTCTGTTACGCT--GGTAGCAGTAGTAGTAGTAATAG 536
*** * * * * ** * *** * ** *** ** * *
consensus_7412#1 TCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTA 515
consensus_7412#2 TCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTA 520
consensus_7412#0 TCGTACGTACGAAGGGTAGGAC-AGGGTAAGAGTTAA-AATTTAGCGAAACGATATAGTG 594
*** ** * **** * * ****** * **** **** * ** **** *
consensus_7412#1 AACTGTCGGTTATTAACAACACTATTAATTCAACAAGTT------CTACCAGCTGTGCAA 569
consensus_7412#2 AACTGTCGGTTATTAACAACACTATTAATTCAACAAGTT------CTACCAGCTGTGCAA 574
consensus_7412#0 AAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCA 654
** * ** * * * * ** * ** **** *** ** * * *
consensus_7412#1 GCCGAAAGGAGCA------GCGAAAGAACAAAAACATGAAAAAAAAGCAAATAACAAACA 623
consensus_7412#2 GCCGAAAGGAGCA------GCGAAAGAACAAAAAAACATTAAAAAAGCAAATAACAAACA 628
consensus_7412#0 ATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGA 714
*** * * ** * * * ** ** * * ** *
consensus_7412#1 AATCACAAGTAATTGATTTACACCCCC-AAAAAAAGTACCCTTACACACGCATATTCGCA 682
consensus_7412#2 AATCACAAGTAATTGATTTACACCCCCCAAAAAAAGTACCCTTACACACGCATATTCGCA 688
consensus_7412#0 AAACAAGTATTGTTAACGTATTTCTTT-TTTATTATTATTATGACAAA-ATATACTT-CG 771
** ** * ** * ** * * * ** * *** * *** * *
consensus_7412#1 TAAGAAATGGTGGAAGGATCGAACAGATAAGCAACAC----------------------- 719
consensus_7412#2 TAAGAAATGGTGGAAGGATCGAACAGA--------------------------------- 715
consensus_7412#0 AAGCGAACAGAGGAACACACTAACACACCAGTTAATAATGAAATGTTTCTTTGCTTTGCT 831
* ** * **** * **** *
consensus_7412#1 -------------------------
consensus_7412#2 -------------------------
consensus_7412#0 TTGCTTTCTAAATCTTTAAAAAAAA 856
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||