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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1132 fasta sequence
[GAATCGCCCGAGGTNAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCA-GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCCGAAAGTACGATACATCTGCGACGTCTGTCGAAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATGTCGCACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGTTGCAAGGATACTTTTGATACGGAGGATGCTTTTC-GGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACACGAACGGTGTAC-GGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGATCTAAAGGTACATCGCCGCACGCACACCAAAGAGAAGCCG-TTCCGATGTAATCTCTGCCCGGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCAAAGGTTCACGGAATAGAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAAAAAAAACCTCACGTGTAGCATGCTAAGCAGGAATAGAATGACCCATAATCGTACTGGAATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAATCATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACATCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AL693520 [GAATCGCCCGAGGTNAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACAATTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGGTGCAGCGTGTGCGAATTGTGTTTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGCTCGAAGAACCAGCCTCCGAAAGTACGCTACATCTGCGACGTCTGTCGAAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATGTCGCACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGTTGCAAGGATACTTTTGATACGGAGGATGCTTTTC GGCAGCATCTAAAGAC ]
[+] EMBL CNS08CRB [ TGCGGGGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATTCTCA GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGCTGAACCAGTCTCCGAAAGCACGATACACCTGCGACGTCTGTCGGAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATGTCGCACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGATGCAAGGATACGTTTGAGACGGAGGATGCTTTTC GGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACACGAACGGTGTAC GGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGATCTAAAGGTACATCGCCGCACGCACACCAAAGAGAAGCCG TTCCGATGTAATCTCTGCCCGGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCAAAGGTTCACGGAATAGAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAAAAAAAACCTCACGTGTAGCATGCTAAGCAGGAATAGAATGACCCATAATCGTACTGGAATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAATCATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACATCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM585431 [ ccGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCA GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCTGAAAGCACGATACATCTGCGACGTCTGTCGAAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCTTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATATCGAACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAGTGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAACGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGTTGCAAGCATACTTTTGATACGGAGGATGCTTTTC GGCAGCACCTAAAGAAGAATGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACACGAACGGTGTACGGGGCACACGGTTGTGAGCACTGTTCGAAGCGATTTACACTTCCCGGCGATCTAAAGGTACATC ]
[-] EMBL CNS08CRC [ ATGGCATCGGGACTACCATCGATCGCTGAACCAGTCTCCGTTTTTACGATACACCTGCCACCTCTGTCGGAAAAAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGGGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATTTCGCACGCATGCAAACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACCACAGCTAAACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAAATGCGCTCGATGCAAGGATACGTTTGAGACGGAGGATGCTTTTCGGGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTTTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACAATCTGCTTACTCACACGAACGGTGTAC GGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGATCTAAAGGTACATCGCCGCACGCACACCAAAGAGAAGCCGCTTCCGATGTAATCTCTGCCCCGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCAAAGGTTCACGGAATAGAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAAATCAAACCTCACGTGTAGCATGCTAAGCAGGAATAGAATGACCCATAATCGTACTGGAATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAATCATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACAT ]
[+] EMBL BX608318 [ GTGGTGAGCACTGTTCGAAGCGATTTACACTTCCCGGCGATCTAAAGGGACATCGCCGCACGCACACCAAAGAGAAGCCG TTCCGATGTAA ]
consensusID : consensus_7420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 788 fasta sequence
[CCGCCTCAGAAGATGGATAAATCCTACAGACGCGTCAACAAAAGAACATAAAAATGTGTCCACCAGAGATCGCTTCTACTGCACATCCCGCAACAGCGCGTTAATCGCCGAATAACGACCACAAAGCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATCATTATGCCGCCAGTCCTCGTCGAACCGTAGCCACTGGTTGGTGGCAGGATGTGTGCCGCCGGTCCGTGTTTCGATTGGTACGCCGATGCGGAGGGCGATGTGTGTGATATGTTGCCGCTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGATGCGGGTGAGTTTCTACCGCCTGCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTACGGCGATCATCGTCAGCTGTTTGCGGAGATTAGCGAAGAAAGCGGCGAGCCCCAATCGCACGAAGAAACGGCAGTTTCGTTGGAAAGTGTTTTAACTTGCAACGGGTGTAACGTGCGGTTTCAATGCAAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCCGCAGTGTGGGGAACAATTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCTGAAAGCACGATACATCTGCG]
[+] EMBL BM628336 [CCGCCTCAGAAGATGGATAAATCCTACAGACGCGTCAACAAAAGAACATAAAAATGTGTCCACCAGAGATCGCTTCTACTGCACATCCCGCAACAGCGCGTTAATCGCCGAATAACGACCACAAAGCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATCATTATGCCGCCAGTCCTCGTCGAACCGTAGCCACTGGTTGGTGGCAGGATGTGTGCCGCCGGTCCGTGTTTCGATTGGTACGCCGATGCGGAGGGCGATGTGTGTGATATGTTGCCGCTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGATGCGGGTGAGTTTCTACCGCCTGCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTACGGCGATCATCGTCAGCTGTTTGCGGAGATTAGCGAAGAAAGCGGCGAGCCCCAATCGCACGAAGAAACGGCAGTTTCGTTGGAAAGTGTTTTAACTTGCAACGGGTGTAACGTGCGGTTTCAATGCAAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCCGCAGTGTGGGGAACAATTCCCA ]
[+] EMBL BX602020 [ TTCTACTGCACATCCCGCAACAGCGGGTTAATCGCCGAATAACGACCACAAAGCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATCATTATGCCGCCAGTCCTCGTCGAACCGTAGCCGCTGGTTGGTGGCAGGATGTGTGCCGCCGGTCCGTGTTTCGATTGGTACGCCGATGCGGAGGGCGATGTGTGTGATATGTTGCCGTTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGAGGCGGGTGAGTTTCTATCGCCTTCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTACGGCGATCATCGTCAGCTGTTTGCGGAGATTAGCGAAGAAAGCGGTGAGCCCCAATCGCACGAAGAAA CGTTGGAAAGTGTTTTAACTTGCAACGGGTGTAACGTGCGCTTTCAATGCAAAACACACCGCACAAGGCATCAGCTTTTGCATCAC GGGGATGAGTTATCCAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCTGAAAGCACGATACATCTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7420#0 GAATCGCCCGAGGTNAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGATGCGT 60
consensus_7420#1 ------------------------------------------------------------
consensus_7420#0 TAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACATT 120
consensus_7420#1 ------------------------------------------------------------
consensus_7420#0 TCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGTGCAGCGTGT 180
consensus_7420#1 ------------------------------------------------------------
consensus_7420#0 GCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACC 240
consensus_7420#1 ------------------------------------------------------------
consensus_7420#0 ATCGATCGAAGAACCAGCCTCCGAAAGTACGATACATCTGCGACGTCTGTCGA--AAAGA 298
consensus_7420#1 --------------CCGCCTCAGAAGATG-GATAAATCCTACAGACGCGTCAACAAAAGA 45
* ***** *** * **** *** * *** * *****
consensus_7420#0 ATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTA 358
consensus_7420#1 ACATAAAAATGTGT-CCACCAGAGATCGCTTCTACTGCACATCCCGCAACAGCGCGTTAA 104
* ** * * * ** * * * ** * * * * ** *
consensus_7420#0 CCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGG----CAACCGGCAGAAAC 414
consensus_7420#1 TCGCCGAATA-ACGACCACAAA-GCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATC 162
* * * * * * * ** * ** * ** * *** ** * *
consensus_7420#0 ATGTCGCACGCATGCATACGCACGAAAAGAAGTT-CCACTGCGCACAATGCGGTGAATCG 473
consensus_7420#1 ATTATGC-CGCCAGTCCTCGT-CGAACCGTAGCCACTGGTTGGTGGCAGGATGTGTGCCG 220
** ** *** * ** **** * ** * * * * * *** **
consensus_7420#0 TTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAG 533
consensus_7420#1 CCGGTCCGTGTTTCG-ATTGGTACGCCGATGCGGAG-GGCGATGTGTGTGATATGTTGCC 278
** * * ** ** ** **** ** * * * **
consensus_7420#0 AATACCAACGGTCTTTTCAGATGCGCTCGTTGC----AAGGATACTTTTGATACGGAGGA 589
consensus_7420#1 GCTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGATGCGGGTGA 338
* ****** ** * * ** *** ** ****** *** **
consensus_7420#0 TGCTTTTCGGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGT 649
consensus_7420#1 -GTTTCT----ACCGCCTGCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTAC 393
* ** * * * ** * **** * ** ** ** * ** ***
consensus_7420#0 GCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACAC 709
consensus_7420#1 GGCGATCATCGTCAGCTGTTTGCGGAG-----ATTAGCGAAGAAAGCGGCGAGCCCCAAT 448
* * * *** ** ** ** *** * * * ** * * *
consensus_7420#0 GAACGGTGTACGGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGA 769
consensus_7420#1 ------CGCACGAAGAAACGGC----AGTTTCGTTGGAAAGTGTTTTAACTTGCAACGGG 498
* *** * **** ** *** *** *** *** * *
consensus_7420#0 TCTAAAGGTACATCGCCGCACGCA-CACCAAAGAGAAGCCGTTCCGATGTAATCTCTGCC 828
consensus_7420#1 TGTAACGTGCGGTTTCAATGCAAAACACACCACACAAGGCAT-CAGCTTTTGCATCACGG 557
* *** * * * * * *** * * *** * * * * * * **
consensus_7420#0 CGGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCA-AAGGTTCACGGAATA 887
consensus_7420#1 GGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCCGCAGTGTG 617
** ** *** * ****** ** ** ** * ** * * * *
consensus_7420#0 GAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAA 947
consensus_7420#1 GGGAACAATTCCCATTGGCACGG--CAGCTCGCAGATCATCTT-----GCAGCCCA---- 666
* ** ** * * ** *** * * * ** * * ** * *
consensus_7420#0 AAAAAACCTCACGTGTAGCATG--CTAAGCAGGAATAG-AATGACCCATAATCGTACTGG 1004
consensus_7420#1 --ACATCCTCA-GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCC-- 721
* * ***** *** *** ** * ** * *** ** ** * ***** *
consensus_7420#0 AATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAAT 1064
consensus_7420#1 --TCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCC-TCTGAAAGCACGA 778
* ** * * * * ** ** ** ** *** * *** * *
consensus_7420#0 CATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACATCAAAAAAAAAAAAAA 1124
consensus_7420#1 TACATCTGCG-------------------------------------------------- 788
* **
consensus_7420#0 AAAAAAAA 1132
consensus_7420#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||