These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1052 fasta sequence [CCGAACGGGCATAAAATAAACAAGCCACTTTCTGTATCGCAACCGCCTGTTGTGACCACTAAACACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGCCTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATG--------A-AAAAATCCCGTTTTAGTT-TTCACGTATTT] [+] EMBL BM644986 [CCGAACGGGCATAAAATAAACAAGCCACTTTCTGTATCGCAACCGCCTGTTGTGACCACTAAACACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGCTGAGCCTGCACAAGTTAACTACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGCAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAGCATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAGTACCACAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGCGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATAcc ] [+] EMBL CNS09HVN [ ACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCTCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGCCTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTTGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCTACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGATTGTTATTTTACCACACGAGATTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAAT ] [+] EMBL CNS09MF4 [ CATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGCCTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATTCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAG ] [-] EMBL CNS09HVO [ CTGCACAAGTTAACCACTTCTAACTTGCTTGCGGAGTTTAAATGAACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAAAACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAACCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATG A AAAAATCCCGTTTTAGTT TTCACGTATTT] [-] EMBL CNS09MF5 [ AATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATG A AAAAATCCCGTTTTAGTTGTTCAC ] [+] EMBL BM584982 [ ccGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAGCATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTAGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAGTACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAGGGTCTCCACTGTTCACATTGCGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATTTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGGTAGCTGACTTCAGAATCACTTTTAAGCAGTAAATAGCATGTCTGGCAAACAAAAATCCCGTTT ] consensusID : consensus_7421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence [CAGCGCAAGTACCATAACGAATCGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATACCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGCACCACTGCCACGGCTAAGATTATGGAGCATGTGGCCGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATGTAAAAGCTGGGCCGACCGGCTGCTATTGTGGTGGTACAGTCGTCAACTCGAACGACTTAACAACATGCCCGTCAGAGGTTCAAGCCCCGAATAGACCGTGCCCCCATACGTAGGACTGACTATCGTGCTGTGGTAACAATTAAGTCACTGAAAGCCCACTTCACTAGTTAGTGGGTACAGGCAGGCCTTGGCCGCCAGCGGTTGTTGTGCCAAAAAGCAGAAGAAGCATGTAAAAATCCCGTTTTAGTTGTTCACGTATTTTTATTCAGCAAATAAATA] [+] EMBL BX609128 [CAGCGCAAGTACCATAACGAATCGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATACCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGCACCACTGCCACGGCTAAGATTATGGAGCATGTGGCCGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATGTAAAAGCTGGGCCGACCGGCTGCTATTGTGGTGGTACAGTCGTCAACTCGAACGACTTAACAACATGCCCGTCAGAGGTTCAAGCCCCGAATAGACCGTGCCCCCATACGTAGGACTGACTATCGTGCTGTGGTAACAATTAAGTCACTGAAAGCCCACTTCACTAGTTAGTGGGTACAGGCAGGCCTTGGCCGCCAGCGGTTGTTGTGCCAAAAAGCAGAAGAAGCATGTAAAAATCCCGTTTTAGTTGTTCACGTATTTTTATTCAGCAAATAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7421#0 CCGAACGGGCATAAAATAAACAAGCCACTTTCTGTATCGCAACCGCCTGTTGTGACCACT 60 consensus_7421#1 ------------------------------------------------------------ consensus_7421#0 AAACACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCC 120 consensus_7421#1 ------------------------------------------------------------ consensus_7421#0 TCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGC 180 consensus_7421#1 ------------------------------------------------------------ consensus_7421#0 CTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGT 240 consensus_7421#1 ------------------------------------------------------------ consensus_7421#0 GGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCG 300 consensus_7421#1 ------------------------------------------------------------ consensus_7421#0 TCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAAT 360 consensus_7421#1 ------------------------------------------------------------ consensus_7421#0 GTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGC 420 consensus_7421#1 ------------------------------------------------------------ consensus_7421#0 TATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAG 480 consensus_7421#1 ---------------------------------------------------------CAG 3 *** consensus_7421#0 CGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAA 540 consensus_7421#1 CGCAAGTACCATAACGAATCGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAA 63 ***** ************* **************************************** consensus_7421#0 AAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAG 600 consensus_7421#1 AAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAG 123 ******************************************************** *** consensus_7421#0 GGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACG 660 consensus_7421#1 GGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACG 183 ************************************************************ consensus_7421#0 CACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCC 720 consensus_7421#1 CACATCTCCGGACATAACAAAACCTATACCGATTGCCACGTATGCACTCAACCAGTTCCC 243 ***************** ********** ******************************* consensus_7421#0 ACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATAC 780 consensus_7421#1 ACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATAC 303 ************************************************************ consensus_7421#0 TGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCT 840 consensus_7421#1 TGCGACTACGGCACCACTGCCACGGCTAAGATTATGGAGCATGTGGCCGACGAACATCCT 363 *********** *********************************** ************ consensus_7421#0 GAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGA 900 consensus_7421#1 GAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGA 423 ************************************************************ consensus_7421#0 GGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTG 960 consensus_7421#1 GGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTG 483 ************************************************************ consensus_7421#0 ATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCA 1020 consensus_7421#1 ATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCA 543 ************************************************************ consensus_7421#0 TGAAAAAATC---CCGTTTTAGTTTTCACGTATTT------------------------- 1052 consensus_7421#1 TGTAAAAGCTGGGCCGACCGGCTGCTATTGTGGTGGTACAGTCGTCAACTCGAACGACTT 603 ** **** *** * * ** * consensus_7421#0 ------------------------------------------------------------ consensus_7421#1 AACAACATGCCCGTCAGAGGTTCAAGCCCCGAATAGACCGTGCCCCCATACGTAGGACTG 663 consensus_7421#0 ------------------------------------------------------------ consensus_7421#1 ACTATCGTGCTGTGGTAACAATTAAGTCACTGAAAGCCCACTTCACTAGTTAGTGGGTAC 723 consensus_7421#0 ------------------------------------------------------------ consensus_7421#1 AGGCAGGCCTTGGCCGCCAGCGGTTGTTGTGCCAAAAAGCAGAAGAAGCATGTAAAAATC 783 consensus_7421#0 ----------------------------------------- consensus_7421#1 CCGTTTTAGTTGTTCACGTATTTTTATTCAGCAAATAAATA 824 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||