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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1052 fasta sequence
[CCGAACGGGCATAAAATAAACAAGCCACTTTCTGTATCGCAACCGCCTGTTGTGACCACTAAACACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGCCTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATG--------A-AAAAATCCCGTTTTAGTT-TTCACGTATTT]
[+] EMBL BM644986 [CCGAACGGGCATAAAATAAACAAGCCACTTTCTGTATCGCAACCGCCTGTTGTGACCACTAAACACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGCTGAGCCTGCACAAGTTAACTACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGCAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAGCATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAGTACCACAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGCGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATAcc ]
[+] EMBL CNS09HVN [ ACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCTCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGCCTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTTGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCTACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGATTGTTATTTTACCACACGAGATTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAAT ]
[+] EMBL CNS09MF4 [ CATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCCTCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGCCTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATTCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAG ]
[-] EMBL CNS09HVO [ CTGCACAAGTTAACCACTTCTAACTTGCTTGCGGAGTTTAAATGAACTGTCTATGATTGTGGGTTCCACTCGGAGACATTAGAGACAATGAAGGAAAACTTTCTTATCCACCAAAAACCGTCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAACCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATG A AAAAATCCCGTTTTAGTT TTCACGTATTT]
[-] EMBL CNS09MF5 [ AATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAATGTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATG A AAAAATCCCGTTTTAGTTGTTCAC ]
[+] EMBL BM584982 [ ccGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAGCATTGCGGCTATCAATGCGATCAATGCTGTTATCGAAGTAGGGATCCCAACAGCGTAGTCGTGCATCAGCGCAAGTACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAGGGTCTCCACTGTTCACATTGCGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATTTGTTTCAATGCGTATACTGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGGTAGCTGACTTCAGAATCACTTTTAAGCAGTAAATAGCATGTCTGGCAAACAAAAATCCCGTTT ]
consensusID : consensus_7421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence
[CAGCGCAAGTACCATAACGAATCGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATACCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGCACCACTGCCACGGCTAAGATTATGGAGCATGTGGCCGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATGTAAAAGCTGGGCCGACCGGCTGCTATTGTGGTGGTACAGTCGTCAACTCGAACGACTTAACAACATGCCCGTCAGAGGTTCAAGCCCCGAATAGACCGTGCCCCCATACGTAGGACTGACTATCGTGCTGTGGTAACAATTAAGTCACTGAAAGCCCACTTCACTAGTTAGTGGGTACAGGCAGGCCTTGGCCGCCAGCGGTTGTTGTGCCAAAAAGCAGAAGAAGCATGTAAAAATCCCGTTTTAGTTGTTCACGTATTTTTATTCAGCAAATAAATA]
[+] EMBL BX609128 [CAGCGCAAGTACCATAACGAATCGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAAAAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAGGGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACGCACATCTCCGGACATAACAAAACCTATACCGATTGCCACGTATGCACTCAACCAGTTCCCACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATACTGCGACTACGGCACCACTGCCACGGCTAAGATTATGGAGCATGTGGCCGACGAACATCCTGAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGAGGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTGATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCATGTAAAAGCTGGGCCGACCGGCTGCTATTGTGGTGGTACAGTCGTCAACTCGAACGACTTAACAACATGCCCGTCAGAGGTTCAAGCCCCGAATAGACCGTGCCCCCATACGTAGGACTGACTATCGTGCTGTGGTAACAATTAAGTCACTGAAAGCCCACTTCACTAGTTAGTGGGTACAGGCAGGCCTTGGCCGCCAGCGGTTGTTGTGCCAAAAAGCAGAAGAAGCATGTAAAAATCCCGTTTTAGTTGTTCACGTATTTTTATTCAGCAAATAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7421#0 CCGAACGGGCATAAAATAAACAAGCCACTTTCTGTATCGCAACCGCCTGTTGTGACCACT 60
consensus_7421#1 ------------------------------------------------------------
consensus_7421#0 AAACACATTCGGTTACCGCCAACTGTAATAAACGGGTTACAACCAATGCATCAACCCTCC 120
consensus_7421#1 ------------------------------------------------------------
consensus_7421#0 TCACCACCTATGGCTGCTCTCAAGCCCTGGAACGGGCTACGCAATGCCGGCAAGTTGAGC 180
consensus_7421#1 ------------------------------------------------------------
consensus_7421#0 CTGCACAAGTTAACCACTTCTTACTTGCTTGCGGAGTTTAAATGCACTGTCTATGATTGT 240
consensus_7421#1 ------------------------------------------------------------
consensus_7421#0 GGGTTCCACTCGGAGACATTAGAGACAATGAAGGAACACTTTCTTATCCACCAAAAACCG 300
consensus_7421#1 ------------------------------------------------------------
consensus_7421#0 TCAAACCAACATTCAATAACGCGCTTTAGCCCGTGGTTAGAGTGTTGGTACTGTAGAAAT 360
consensus_7421#1 ------------------------------------------------------------
consensus_7421#0 GTGGCAACGAGTAGTGACAACTTGTTGGAGCATGTTCAAATGATGCACAAACATTGCGGC 420
consensus_7421#1 ------------------------------------------------------------
consensus_7421#0 TATCAATGCGATCAATGCTGTTATCGAAGTCGGGATCCCAACAGCGTAGTCGTGCATCAG 480
consensus_7421#1 ---------------------------------------------------------CAG 3
***
consensus_7421#0 CGCAAATACCATAACGAATTGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAA 540
consensus_7421#1 CGCAAGTACCATAACGAATCGTTTCAGAACGCCAAAATTCTATGCGTCCCGGGACGTCAA 63
***** ************* ****************************************
consensus_7421#0 AAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTGAAG 600
consensus_7421#1 AAGCCTTACACCCCCATGGACGACGATGCCATTAGAATCGAAATGAAAACTAACGTAAAG 123
******************************************************** ***
consensus_7421#0 GGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACG 660
consensus_7421#1 GGTCTCCACTGTTCACATTGTGTTATTCGCAAATTTATCGATTTGGATGAATTTCTAACG 183
************************************************************
consensus_7421#0 CACATCTCCGGACATAAAAAAACCTATATCGATTGCCACGTATGCACTCAACCAGTTCCC 720
consensus_7421#1 CACATCTCCGGACATAACAAAACCTATACCGATTGCCACGTATGCACTCAACCAGTTCCC 243
***************** ********** *******************************
consensus_7421#0 ACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATAC 780
consensus_7421#1 ACACATACTATGGAGGAGCATATTAAATTACACAACATATATCTGTTTCAATGCGTATAC 303
************************************************************
consensus_7421#0 TGCGACTACGGGACCACTGCCACGGCTAAGATTATGGAGCATGTGGCTGACGAACATCCT 840
consensus_7421#1 TGCGACTACGGCACCACTGCCACGGCTAAGATTATGGAGCATGTGGCCGACGAACATCCT 363
*********** *********************************** ************
consensus_7421#0 GAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGA 900
consensus_7421#1 GAAAGAATGTTATTTTACCACACGAGAGTTTCGCGGAATAATTTTCCACCCTTTGTCCGA 423
************************************************************
consensus_7421#0 GGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTG 960
consensus_7421#1 GGAATACAGCGAATCGCGCCGAATCGTTACGTGGTTTGTTCTACTCAGCCAAATGAGGTG 483
************************************************************
consensus_7421#0 ATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCA 1020
consensus_7421#1 ATACATATTAATTAATAAGTGATAGCTGACTTCAGAATCACTTTTAAGTAGTAAATAGCA 543
************************************************************
consensus_7421#0 TGAAAAAATC---CCGTTTTAGTTTTCACGTATTT------------------------- 1052
consensus_7421#1 TGTAAAAGCTGGGCCGACCGGCTGCTATTGTGGTGGTACAGTCGTCAACTCGAACGACTT 603
** **** *** * * ** *
consensus_7421#0 ------------------------------------------------------------
consensus_7421#1 AACAACATGCCCGTCAGAGGTTCAAGCCCCGAATAGACCGTGCCCCCATACGTAGGACTG 663
consensus_7421#0 ------------------------------------------------------------
consensus_7421#1 ACTATCGTGCTGTGGTAACAATTAAGTCACTGAAAGCCCACTTCACTAGTTAGTGGGTAC 723
consensus_7421#0 ------------------------------------------------------------
consensus_7421#1 AGGCAGGCCTTGGCCGCCAGCGGTTGTTGTGCCAAAAAGCAGAAGAAGCATGTAAAAATC 783
consensus_7421#0 -----------------------------------------
consensus_7421#1 CCGTTTTAGTTGTTCACGTATTTTTATTCAGCAAATAAATA 824
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||