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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 971 fasta sequence
[ACTGGAGTGTGTTTTTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCA-GA-TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC-GACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA-GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC-GGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTACATGCACACTTAC]
[+] EMBL CNS094W4 [ACTGGAGTGTGTTTTTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCA GATTATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGGTCACCGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAG ]
[+] EMBL CNS09N0X [ TTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCA GA TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGCGGACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAGTG GGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTACATGCACACTTAC]
[+] EMBL CNS09EL2 [ GGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGA CGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCAGGA TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAAGTGGGCAAT ]
[-] EMBL CNS09N0Y [ ATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATAAAAATCACCTCAGCCAGCCAGCGTCCCATCTTCAAACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTTTCTACCGCAGGA TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCCAGAGTTGCCCACTGATGAGAGATCTAAAGCAAACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATTTCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA GCTGGATTTCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAAAAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCAAAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTAAATGCAC ]
[-] EMBL CNS094W5 [ aTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATATCAAGGAAACGAATCTGTAAATCACGAATTTGCCCCGCACGGTCACCGAGGAGCACGCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAGGTAGAGTTCGAATGCGCAATACCCCGTACTGTATAATCACCCGACATATTTACTTACATGCACA ]
[-] EMBL CNS09EL3 [ CGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAAAAAGCGCGAGGAAGCGCAGGAAGCAATATCGGGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTTTAGTGCACAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACA ]
consensusID : consensus_7423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CCGCGGCAGCAATCAGCAGCAACATCGTCATCTCTCGTGTTCGTCCTGTGCCCTGGTCATTCCCCGCGAAAGTTGGCGAGTTTTTGTCGAGAAAGCGAACGCAAACGTGGTGCGTGGAATAGCGTGGAATCTGTGAAGTGAAACGAAAAGAAGTAAAAAGAAGAAAAAAAAAACATCTGTACAAAGAATACATAAAAAAGGAATCACTTCGAGCGAGACGGAACGAGGACGACGTGTGGCAGCTGCGGCTACAGCGAGGAAAATGTACAGTAAAATGAATGGATATCCTTCGTCATCCTTTCGATCAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCGACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCAGGATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGAT]
[+] EMBL BM626584 [CCGCGGCAGCAATCAGCAGCAACATCGTCATCTCTCGTGTTCGTCCTGTGCCCTGGTCATTCCCCGCGAAAGTTGGCGAGTTTTTGTCGAGAAAGCGAACGCAAACGTGGTGCGTGGAATAGCGTGGAATCTGTGAAGTGAAACGAAAAGAAGTAAAAAGAAGAAAAAAAAAACATCTGTACAAAGAATACATAAAAAAGGAATCACTTCGAGCGAGACGGAACGAGGACGACGTGTGGCAGCTGCGGCTACAGCGAGGAAAATGTACAGTAAAATGAATGGATATCCTTCGTCATCCTTTCGATCAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCGACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCAGGATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7423#0 ------------------------------------------------------------
consensus_7423#1 CCGCGGCAGCAATCAGCAGCAACATCGTCATCTCTCGTGTTCGTCCTGTGCCCTGGTCAT 60
consensus_7423#0 ------------------------------------------------------------
consensus_7423#1 TCCCCGCGAAAGTTGGCGAGTTTTTGTCGAGAAAGCGAACGCAAACGTGGTGCGTGGAAT 120
consensus_7423#0 ------------------------------------------------------------
consensus_7423#1 AGCGTGGAATCTGTGAAGTGAAACGAAAAGAAGTAAAAAGAAGAAAAAAAAAACATCTGT 180
consensus_7423#0 ------------------------------------------------------ACTGGA 6
consensus_7423#1 ACAAAGAATACATAAAAAAGGAATCACTTCGAGCGAGACGGAACGAGGACGACGTGTGGC 240
***
consensus_7423#0 GTGTGTTTTTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAG 66
consensus_7423#1 AGCTGCGGCTACAGCGAGGAAAAT-GTACAGTAAAATGAATGGATATCCTTCGTCATCCT 299
** * **** * * * ** *** ** ** * * * *
consensus_7423#0 TCGGA---AGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATG 123
consensus_7423#1 TTCGATCAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATG 359
* ** ****************************************************
consensus_7423#0 CTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGT 183
consensus_7423#1 CTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGT 419
************************************************************
consensus_7423#0 TCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCA 243
consensus_7423#1 TCGGTGGTGGCAATCCGTCGACACCGCACCATCACCACCACCACCATCACAATCACCTCA 479
******************* ****************************************
consensus_7423#0 GCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGA 303
consensus_7423#1 GCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGA 539
************************************************************
consensus_7423#0 ACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGC 363
consensus_7423#1 ACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGC 599
************************************************************
consensus_7423#0 AG-ATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTT 422
consensus_7423#1 AGGATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTT 659
** *********************************************************
consensus_7423#0 GCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACT 482
consensus_7423#1 GCCGACTGAT-------------------------------------------------- 669
**********
consensus_7423#0 ACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTA 542
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 ACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGCGACGATATCAAGGAAACGAATC 602
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 TGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCAGCTGGATATCATATTCGGCA 662
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 AGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTG 722
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATCGGCCCTCA 782
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 ATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATG 842
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAG 902
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 GTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTACATG 962
consensus_7423#1 ------------------------------------------------------------
consensus_7423#0 CACACTTAC 971
consensus_7423#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||