These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 971 fasta sequence [ACTGGAGTGTGTTTTTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCA-GA-TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC-GACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA-GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC-GGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTACATGCACACTTAC] [+] EMBL CNS094W4 [ACTGGAGTGTGTTTTTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCA GATTATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGGTCACCGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAG ] [+] EMBL CNS09N0X [ TTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCA GA TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGCGGACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAGTG GGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTACATGCACACTTAC] [+] EMBL CNS09EL2 [ GGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAGTCGGAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGA CGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCAGGA TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATATCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAAGTGGGCAAT ] [-] EMBL CNS09N0Y [ ATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATAAAAATCACCTCAGCCAGCCAGCGTCCCATCTTCAAACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTTTCTACCGCAGGA TATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCCAGAGTTGCCCACTGATGAGAGATCTAAAGCAAACTGGGTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATTTCAAGGAAACGAATCTGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCA GCTGGATTTCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAAAAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCAAAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTAAATGCAC ] [-] EMBL CNS094W5 [ aTACAGCTACGGCTTTGGTTTCGTAAACTACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTAACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGC GACGATATCAAGGAAACGAATCTGTAAATCACGAATTTGCCCCGCACGGTCACCGAGGAGCACGCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATC GGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAGGTAGAGTTCGAATGCGCAATACCCCGTACTGTATAATCACCCGACATATTTACTTACATGCACA ] [-] EMBL CNS09EL3 [ CGAGGAGCA GCTGGATATCATATTCGGCAAGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTGGAGTAGCCTTCGTACGGTTCAAAAAGCGCGAGGAAGCGCAGGAAGCAATATCGGGCCCTCAATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATGGCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTTTAGTGCACAATAACAGAGGTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACA ] consensusID : consensus_7423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCGGCAGCAATCAGCAGCAACATCGTCATCTCTCGTGTTCGTCCTGTGCCCTGGTCATTCCCCGCGAAAGTTGGCGAGTTTTTGTCGAGAAAGCGAACGCAAACGTGGTGCGTGGAATAGCGTGGAATCTGTGAAGTGAAACGAAAAGAAGTAAAAAGAAGAAAAAAAAAACATCTGTACAAAGAATACATAAAAAAGGAATCACTTCGAGCGAGACGGAACGAGGACGACGTGTGGCAGCTGCGGCTACAGCGAGGAAAATGTACAGTAAAATGAATGGATATCCTTCGTCATCCTTTCGATCAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCGACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCAGGATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGAT] [+] EMBL BM626584 [CCGCGGCAGCAATCAGCAGCAACATCGTCATCTCTCGTGTTCGTCCTGTGCCCTGGTCATTCCCCGCGAAAGTTGGCGAGTTTTTGTCGAGAAAGCGAACGCAAACGTGGTGCGTGGAATAGCGTGGAATCTGTGAAGTGAAACGAAAAGAAGTAAAAAGAAGAAAAAAAAAACATCTGTACAAAGAATACATAAAAAAGGAATCACTTCGAGCGAGACGGAACGAGGACGACGTGTGGCAGCTGCGGCTACAGCGAGGAAAATGTACAGTAAAATGAATGGATATCCTTCGTCATCCTTTCGATCAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATGCTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGTTCGGTGGTGGCAATCCGTCGACACCGCACCATCACCACCACCACCATCACAATCACCTCAGCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGAACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGCAGGATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTTGCCGACTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7423#0 ------------------------------------------------------------ consensus_7423#1 CCGCGGCAGCAATCAGCAGCAACATCGTCATCTCTCGTGTTCGTCCTGTGCCCTGGTCAT 60 consensus_7423#0 ------------------------------------------------------------ consensus_7423#1 TCCCCGCGAAAGTTGGCGAGTTTTTGTCGAGAAAGCGAACGCAAACGTGGTGCGTGGAAT 120 consensus_7423#0 ------------------------------------------------------------ consensus_7423#1 AGCGTGGAATCTGTGAAGTGAAACGAAAAGAAGTAAAAAGAAGAAAAAAAAAACATCTGT 180 consensus_7423#0 ------------------------------------------------------ACTGGA 6 consensus_7423#1 ACAAAGAATACATAAAAAAGGAATCACTTCGAGCGAGACGGAACGAGGACGACGTGTGGC 240 *** consensus_7423#0 GTGTGTTTTTCGGGCGATGGTAGTCGTGCAGGCGAACGAGGCAGCAGCAGCAGCAAAGAG 66 consensus_7423#1 AGCTGCGGCTACAGCGAGGAAAAT-GTACAGTAAAATGAATGGATATCCTTCGTCATCCT 299 ** * **** * * * ** *** ** ** * * * * consensus_7423#0 TCGGA---AGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATG 123 consensus_7423#1 TTCGATCAAGTAGCGGCCGACTGTGGGGAATGTCCCACTCGTTACCCTCCGGAATGGATG 359 * ** **************************************************** consensus_7423#0 CTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGT 183 consensus_7423#1 CTGACTTTTCATCCTATTCGCGGCCCCGACTGTACGGCGATATGCCGTCGAGCAGCACGT 419 ************************************************************ consensus_7423#0 TCGGTGGTGGCAATCCGTCAACACCGCACCATCACCACCACCACCATCACAATCACCTCA 243 consensus_7423#1 TCGGTGGTGGCAATCCGTCGACACCGCACCATCACCACCACCACCATCACAATCACCTCA 479 ******************* **************************************** consensus_7423#0 GCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGA 303 consensus_7423#1 GCCAGCCAGCGTCCCATCATCACACGTCCTCGTCCAGCACCAGCTCGCTGACCGGCATGA 539 ************************************************************ consensus_7423#0 ACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGC 363 consensus_7423#1 ACTTTGGTCCGGGGTCGTCCGGCACCGCCGGTACGAACCTGATCGTCAACTATCTACCGC 599 ************************************************************ consensus_7423#0 AG-ATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTT 422 consensus_7423#1 AGGATATGACGGAGCGCGAAATGTACTCGATGTTCTCCGCGATGGGACCCATCGAGAGTT 659 ** ********************************************************* consensus_7423#0 GCCGACTGATGAGAGATCTAAAGCAGACTGGGTACAGCTACGGCTTTGGTTTCGTAAACT 482 consensus_7423#1 GCCGACTGAT-------------------------------------------------- 669 ********** consensus_7423#0 ACCTGAACGAGGAAGCGGCACAACGAGCGATCAAATGTCTGAATGGCTATCCGCTGCGTA 542 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 ACAAGCGTCTAAAGGTTTCGTACGCACGGCCACAGAGCGACGATATCAAGGAAACGAATC 602 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 TGTACATCACGAATTTGCCCCGCACGATCACCGAGGAGCAGCTGGATATCATATTCGGCA 662 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 AGTACGGTACCATCGTGCAAAAGAATATCCTTCGAGATAAGCTAACGGGTCAGCCGCGTG 722 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GAGTAGCCTTCGTACGGTTCAACAAGCGCGAGGAAGCGCAGGAAGCAATATCGGCCCTCA 782 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 ATAATGTCATCCCGCAGGGTGGCAATCAACCACTGATAGTGCGTGTTGCAGAAGACCATG 842 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GCAGAGCTAAGGCGGCACTCTACGTACCCTCGTACAACTCTATAGTGCACAATAACAGAG 902 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 GTAGAGTACGAATGCGCAATACCCCGTACTGAATAATCACCCGACATATTTACTTACATG 962 consensus_7423#1 ------------------------------------------------------------ consensus_7423#0 CACACTTAC 971 consensus_7423#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||