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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 795 fasta sequence
[CCGCACTAATCGATCGAGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGCTCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCCCGCCCTGCAAACGCATTAGGGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCC-GTACACAA------CCTCCCCCA--CTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCGACCGCGGTCGCACATCACAACAACAGTGACCGACCGGAGGGTGGTGTTGGTGGGTGGTGGTTGTGTGTAGCATTATTTATTGGTGGCAGATCAAAACCATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTACGGGT]
[+] EMBL BM630914 [CCGCACTAATCGATCGAGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGATGGTGCTCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCCCGCCCTGCAAACGCATTAGAGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCC GTACACAA CCTCCCCCA CTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTT ]
[+] EMBL BM646492 [ ccgGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGCTCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCATAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCCCGCCCTGCAAACGCATTAGGGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCGTCC GTATACA CCCC TCCCTC CTC GTACATTCAATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGGCCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCG ]
[+] EMBL BM640514 [ ccgCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGCTCAGGGAAACCGCGCAGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAGCTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCTCGCCCTGCAAACGCATTAGGGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCCGGTATACAACCCCCCCCCCCCCCACCCTTTAAACCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCGACCGCGGTCG ]
[+] EMBL BM590588 [ ccgGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCC GTACACAA CCTCCCCCA CTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCGACCGCGGTCGCACATCACAACAACAGTGACCGACCGGAGGGTGGTGTTGGTGGGTGGTGGTTGTGTGTAGCATTATTTATTGGTGGCAGATCAAAACCATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTACGGGT]
consensusID : consensus_7439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence
[ATCGCCACGAGGTTAATTACTCTTAGTGCGTTCAGCCTTCATCATTCTAAGGTAAAGAATGCCATACAAATGTGTCCGCCTGGTGGGTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCCTCGTAACAGTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAACAAATGCCCAACACAATGGCCG-CCACATCAAACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGTACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGCCGATCGATATGCGCTTCAACTCCGGCACATCCTATCGATCATGGTGTACACTACACTGACTCGTGTATTCGGACACGGGCAAACTTTACGGTGCCTCAGCATACTGGCCCAGACGGNAAGCGTGCGCGCCTCGTCCGCGCGATCAAATAATTCATGTTGGCGCATCTAGCCGACTTGCAGATCTTGCTGGTCANCCCTTTTCTCGAGTTGCATTGCCCACTTGGGCAGNNATTTGGGGACCTGCGGGCGGTTACCAACCGCGGTCTCAACAATTGCGAACCGCGGCCCCGGCTGGNTNNTCGACTACGCTGTCCGGNCGTCGACTGGGCCGGTTCCTTC]
[+] EMBL AL696313 [ATCGCCACGAGGTTAATTACTCTTAGTGCGTTCAGCCTTCATCATTCTAAGGTAAAGAATGCCATACAAATGTGTCCGCCTGGTGGGTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCCTCGTAACAGTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAACAAATGCCCAACACAATGGCCG CCACATCAAACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGTACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGCCGATCGATATGCGCTTCAACTCCGGCACATCCTATCGATCATGGTGTACACTACACTGACTCGTGTATTCGGACACGGGCAAACTTTACGGTGCCTCAGCATACTGGCCCAGACGGNAAGCGTGCGCGCCTCGTCCGCGCGATCAAATAATTCATGTTGGCGCATCTAGCCGACTTGCAGATCTTGCTGGTCANCCCTTTTCTCGAGTTGCATTGCCCACTTGGGCAGNNATTTGGGGACCTGCGGGCGGTTACCAACCGCGGTCTCAACAATTGCGAACCGCGGCCCCGGCTGGNTNNTCGACTACGCTGTCCGGNCGTCGACTGGGCCGGTTCCTTC]
[+] EMBL BX605457 [ TACTCTTAGTGCGTTCAG TTCATCATTCTAAGG AAAGAATGCCATACAAATGTGTCCGCCTGGTGGGTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCCTCGTAACAGTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAAC AATGCCCAACACAATGGCCGCCCACATC AACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGTACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGCCGAT ]
consensusID : consensus_7439#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[AGAATCGCCACGAGGTCAAACATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTGCGGGTTCGGGGTGTGTGTGTGTGAGTTTGTGTCGTGTTGGGGCTAGGATTGTGAAGGTGCTGTTTTGGAGCACTCACGAGTGTGTCTCTACAAGCAGTCGGCAGGAGTTATCTGGCCGACGAATCTCTCCGAACTCCGAGGGCACTTCACAAAAGTGTAGGAACGTTAGTGGCACATGGTTGGGGCAGGGCAGCGATTTGTGTGCACGGGAAGAATCTCGTAATAGACTGTGAATTACTCTTAGTGCGTTCAGTTCATCATTATAAGGAAAGAATGCCATACAAATGTGTCCGCCTGGTGGTTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCTTCGTAACACGTGTAGCCGNAAGCCGCGAAGTACGGTGCTGCACAGCAGGCCAGCGCAGGAACAAGTGCCCAACACAATGGCCGGGCCGACANTCTGAACCAGGCAATCGAGGAACATCGGAATTTGGCCGA]
[+] EMBL BX469824 [AGAATCGCCACGAGGTCAAACATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTGCGGGTTCGGGGTGTGTGTGTGTGAGTTTGTGTCGTGTTGGGGCTAGGATTGTGAAGGTGCTGTTTTGGAGCACTCACGAGTGTGTCTCTACAAGCAGTCGGCAGGAGTTATCTGGCCGACGAATCTCTCCGAACTCCGAGGGCACTTCACAAAAGTGTAGGAACGTTAGTGGCACATGGTTGGGGCAGGGCAGCGATTTGTGTGCACGGGAAGAATCTCGTAATAGACTGTGAATTACTCTTAGTGCGTTCAGTTCATCATTATAAGGAAAGAATGCCATACAAATGTGTCCGCCTGGTGGTTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCTTCGTAACACGTGTAGCCGNAAGCCGCGAAGTACGGTGCTGCACAGCAGGCCAGCGCAGGAACAAGTGCCCAACACAATGGCCGGGCCGACANTCTGAACCAGGCAATCGAGGAACATCGGAATTTGGCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7439#1 ------------------------------------------------------------
consensus_7439#2 ------------------------------------------------------------
consensus_7439#0 CCGCACTAATCGATCGAGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGC 60
consensus_7439#1 ------------------------------------------------------ATCGCC 6
consensus_7439#2 ---------------------------------------------------AGAATCGCC 9
consensus_7439#0 TCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCG 120
****
consensus_7439#1 ACGAGG-TTAATTAC-TCTTAGTGCGTTCAGCCTTCATCATTCTAAG-GTAAAGAATGCC 63
consensus_7439#2 ACGAGG-TCAAACATGTCCGGGTCCGGGGGGAGGCGACGATC---GA-GCATATATTGCT 64
consensus_7439#0 GTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCAC 180
* ** * * * * * ** * *
consensus_7439#1 ATACAAATGTG------------TCCGCCTGGTGGGTAACGAAACACGTGCACTAGT--G 109
consensus_7439#2 -TGCCGAAGCC------------TCGGTACAGTTGTGTGCC---CGTGTGAACT-GC--G 105
consensus_7439#0 TCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTC-CGGATGCGTTCGCTCG 239
* * * ** * * * ** * * *
consensus_7439#1 ATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAG-CACCGAGCA-ACCCCTCGTAACA 167
consensus_7439#2 ACATTGACTCTGCGGGTTCGGGGTGTGTGTGTGTGA-GTTTGTGT---CGTGTTGGGGCT 161
consensus_7439#0 TTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGT 299
* * * * * * * * * *
consensus_7439#1 GTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAACAAATGCCCAACA 227
consensus_7439#2 AGGATTGTGAAGGTGCTGTTTTGGAGCACTCA-CGAGTGTGTCTCTACAAGCAGTCGGCA 220
consensus_7439#0 ACAATTTTTTTGATGTTGGTTTG-----CTTA-CTTGTGTGTTAGTGCAGGCA--CGGTA 351
* * * * * * * * * ** * *
consensus_7439#1 CAATGGCCGCCACATCAAACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGT 287
consensus_7439#2 GGA--GTTATCTGGCCGACGAATCTCTCCGAACTCCGAGGGCACTTCACAAAAGTGTAGG 278
consensus_7439#0 GAG--GTCTCTTCCCACATCGGTCCCTATCAG-TCCGCCCGCCCTGCAAACGCATTAGGG 408
* * * * * ** * * *
consensus_7439#1 ACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGC-CGATCGATATGCGCTTC 346
consensus_7439#2 AACGTTAGTGGCACATGGTTGGGGCAGGGCA--GCGATTTGTGTGCACGGGAAG------ 330
consensus_7439#0 TGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCCGTACACA---- 464
* * ** * * *
consensus_7439#1 AACTCCGGCACATCCTATCGATCATGGTGTA--CACTACACTGA---CTCGTGTATTCGG 401
consensus_7439#2 AATCTCGTAATAGACTGTGAATTACTCT-----TAGTGCGTTCA---GTTCATCATTATA 382
consensus_7439#0 ACCTCCCCCACTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACG 524
* * * * * * * * * *
consensus_7439#1 ACACGGGCAAACTTTACGG-T-GCCTCAGCATAC----TGGCCCAGACGGNAAGCGTGCG 455
consensus_7439#2 AGGAAAGAATGCCATACAAAT-GTGTCCGCCTGG----TGGTT--AACGAAACACGTGCA 435
consensus_7439#0 GTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCA 584
* * * * * * * * ** * * ** *
consensus_7439#1 CG-CCTCGTCCG--CGCGATCAAATAATTCATGTTGGCGC-ATCTAGCCGACTTGCAGAT 511
consensus_7439#2 CT-AGTGATA-G--CAGGTTCGA-----TCGTGCTAGATG-GATTAGCTTA---GCA--- 479
consensus_7439#0 GTGAGTGTTTCGACCGCGGTCGCACA--TCACAACAACAGTGACCGACCGGAGGGTGGTG 642
* * * * * ** ** * *
consensus_7439#1 CTTGCTGGTCANCCCTTTTCTCGAGTTGCATTGCCCACTTGGGCAGNNATTTGGGGACCT 571
consensus_7439#2 ----CCGAGCAACCCTT--CGTAACACGTGTAGCCGN---AAGCCGCGAAGTACGGTGCT 530
consensus_7439#0 TTGGTGGGTGGTGGTTGTGTGTAGCATTATTTATTGGTGGCAGATCAAAACCATGTCCGG 702
* * * * * *
consensus_7439#1 GCGGGCGGTTACCAACCGCGGTCTCAACAATTGCGAACCGCGGCCCCGGCTGGNTNNTCG 631
consensus_7439#2 GCA--CAGCAGGCCAGCGCAGGAACAAGTGCCCAACACAATGGCCGGGCCGACANTCTGA 588
consensus_7439#0 GTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGT 762
* * ** ** * *** * *
consensus_7439#1 ACTACGCTGTCCGG--NCGTCG--ACTGGGCCGGTTCCTTC 668
consensus_7439#2 ACCAGGCAATCGAGGAACATCGGAATTTGGCCGA------- 622
consensus_7439#0 GCCCGTGTGAACTGCGACATTG--ACTCTACGGGT------ 795
* * * * * * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||