These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1155 fasta sequence [CCGGGACTCCATCAATAGATTAGAAATGTGTTTTCCGTTTTGTTTGTTTCTAATTTATAAAGCAAACAGACGAAACTCTACCGCAACTGAGAAAGGTTTCTCCAACAAAAAAACAAACCCAATAAAACACTGACAAATACACCACAACGGAAGCGGTGAGGAGATTTTGATTTTGCCAAGCCTTTTGCAAGGGCTTGCACAGGGACGAGTTGCTAAATATGTTTTTAGCTGTAATTACGAACTGCGCTTGAGCACAAAAGGTGCGGCCAGCAGTGATGATGGAAGGCACGAGAAGTTTAAAATCTCCCCTTCAACTTGAATCATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAAT-AAAAGAGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAA-AAACAAAACAAAGAAAGTGGATAAAGAACCGCAAGACAAGTGAAAAGAAACAAATAACTATATTCAACTTATACAAGGGATTTATAACATATTAAGGTAGTCAAAAAGAAGAAGAAAAACGGAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTTGCAAAAATCGAACATTAAAGTATGAAAACAATGACCCATTAACAGGCAAAATTGTATTTTAGATAACAAAAGCAACTAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATTAAGCTAAACAAGAAGTAAAACA----AAAAAC-AAAAACTAGCAAGTAAGACGAAACAAAGCAAAGCATAAACTTTAAAGTGT-AAAGGGAAAGAAGAAGGAAGGAACACAAAACATACATTAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAAGCACACATTCAAAAAAAAAAAAAAAAGAAAGAGACATCGTCACGTAGAG] [+] EMBL BM639360 [CCGGGACTCCATCAATAGATTAGAAATGTGTTTTCCGTTTTGTTTGTTTCTAATTTATAAAGCAAACAGACGAAACTCTACCGCAACTGAGAAAGGTTTCTCCAACAAAAAAACAAACCCAATAAAACACTGACAAATACACCACAACGGAAGCGGTGAGGAGATTTTGATTTTGCCAAGCCTTTTGCAAGGGCTTGCACAGGGACGAGTTGCTAAATATGTTTTTAGCTGTAATTACGAACTGCGCTTGAGCACAAAAGGTGCGGCCAGCAGTGATGATGGAAGGCACGAGAAGTTTAAAATCTCCCCTTCAACTTGAATCATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAAT AAAAGAGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAA ] [+] EMBL BM630962 [ ccGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAATGAAAAG GAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAA AAACAAAACAAAGAAAGTGGATAAAGAACCGCAAGACAAGTGAAAAGAAACAAATAACTATATTCAACTTATACAAGGGATTTATAACATATTAAGGTAGTCAAAAAGAAGAAGAAAAACGGAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTTGCAAAAATCGAACATTAAAGTATGAAAACAATGACCCATTAACAGGCAAAATTGTATTTTAGATAACAAAAGCAACTAAAATAATGAAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATAAAGCTAAACAAGAAGTAAAAAAAAACAAAAACAAAAAACTAGCAAGTAAGAGGAAACAAAGCAAAGCATAAACTTTAAAGTGTAAAAGGGAAAGAAGAAGTAAGGAACACAAAACA ] [+] EMBL BM604997 [ ccgAACACAGTGACCAAACACACAAAAAAAAAACGTACGCGACATGTTTTCTTTTAAAAGAAAAAAAAAACAAACAAAACAAAGAAAGTGGAAAAAGAACCGCAAGACAAGTGAAAAGAAACAAATAACTATATTCAACTTATACAAGGGATTTATAACATATTAAGGTAGTCAAAAAGAAGAAGAAAAACGAAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTTGCAAAAATCGAACATTAAAGTATGAAAACAATGACCCATTAACAGGCAAAATTGTATTTTAGATAACAAAAGCAACTAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATTAAGCTAAACAAGAAGTAAAACA AAAAAC AAAAACTAGCAAGTAAGACGAAACAAAGCAAAGCATAAACTTTAAAGTGT AAAGGGAAAGAAGAAGGAAGGAACACAAAACATACATTAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAAGCACACATTCAAAAAAAAAAAAAAAAGAAAGAGACATCGTCACGTAGAG] [+] EMBL BX625421 [ TAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATTAAGCTAAACAAGAAGTAAAACA AAAAAC AAAAACTAGCAAGTAAGACGAAACAAAGCAAAGCATAAACTTTAAAGTGT AAAGGGAAAGAAGAAGGAAGGAACACAAAACATACATTAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAA ] consensusID : consensus_7446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [CCGGATCCTTCCGGCATAGCATTTGGACTGTTTTGCATATATTTGCCTTAGCCCCGACTCTGCGTTTGTCTGTGTGTGTGTGTGTTCTGTGGCAGAGTGCACAGATCCATTGGCGCTTCGGGGGGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAAACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGAAGTAGAAGAATAATAAG------AATAATAATAATAATAAGAAGAAGAAGAAAACAGTGACATTAACGCAGTGCAGATGAAGAAAAACTAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAACACAACACTGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCGATTTGAAGGGTGTGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGAATCATGTGTAAGGCTCCAAAGAAAGGTGGACAAACAAAGTGAGGGAAGACGAAACAAAAACTAAACAAAAAAAAAAGGATGATAGGATGATAAAAACAAAACAGAAAATGGAGCAGCAGACGTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCAAAAGCGACTCCTTGGGAATGGTTTTTCTGTCCTTTGCGCAGCGCTGTCCTGTGCTCGCGATTTTTAGATTTTTTTTTCAATGTCTCCTC] [+] EMBL BM589568 [CCGGATCCTTCCGGCATAGCATTTGGACTGTTTTGCATATATTTGCCTTAGCCCCGACTCTGCGTTTGTCTGTGTGTGTGTGTGTTCTGTGGCAGAGTGCACAGATCCATTGGCGCTTCGGGGGGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAAACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGAAGTAGAAGAATAATAAG AATAATAATAATAATAAGAAGAAGAAGAAAACAGTGACATTAACGCAGTGCAGATGAAGAAAAACTAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAACACAACACTGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCGATTTGAAGGGTGTGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGAATCATGTGTAAGGCTCCAAAGAAAGGTGGACAAACAAAGTGAGGGAAGACGAAACAAAAACTAAACAAAAAAAAAAGGATGAT ] [+] EMBL BM638992 [ ccgAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAAACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGTAGTAGAAGAATAATAAGAATAATAATAATAATAATAATAAGAAGAAGAAGAAAACAGTGACATTAACGCAGAGCAGATGAAGAAACACTAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAACACAACACTGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCGATTTGAAGGGTGTGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGAATCGTGTGTAAGGCTCCAAAGAAAGGTGGACAAACAAAGTGAAGGAAGACGAAACAAAAACTAAACAAAAAACAAAAAAAAAAAGGATGATAAAAACAAAACAGAAAATGGAGCAGCAGACGTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCAAAAGCGACTCCTTGGGAATGGTTTTTCTGTCCTTTGCGCAGCGCTGTCCTGTGCTCGCGATTTTTAGATTTTTTTTTCAATGTCTCCTC] consensusID : consensus_7446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGAAAAGGTGCGACCAGCAGTGATGATGGAAGGCACGAGAAGATTAAAATCTCCCCTTCGATTTGAAATATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAATGAAAAGGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCCAATTTGTAAGTGATGCAAA] [+] EMBL BM627703 [CCGAAAAGGTGCGACCAGCAGTGATGATGGAAGGCACGAGAAGATTAAAATCTCCCCTTCGATTTGAAATATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAATGAAAAGGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCCAATTTGTAAGTGATGCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7446#0 CCGGGACTCCATCAATAGATTAGAAATGTGTTTTCCGTTTTGTTTGTTTCTAATTTATAA 60 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 AGCAAACAGACGAAACTCTACCGCAACTGAGAAAGGTTTCTCCAACAAAAAAACAAACCC 120 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 AATAAAACACTGACAAATACACCACAACGGAAGCGGTGAGGAGATTTTGATTTTGCCAAG 180 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 ----------------------------------------------CCGGATCCTTCCGG 14 consensus_7446#0 CCTTTTGCAAGGGCTTGCACAGGGACGAGTTGCTAAATATGTTTTTAGCTGTAATTACGA 240 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 CATAGCATTTGGACTGTTTTGCATATATTTGCCTTAGCCCCGACTCTGCGTTTGTCTGTG 74 consensus_7446#0 ACTGCGCTTGAGCACAAAAGGTGCGGCCAG---CAGTGATGATGGAAGGCACGAGAAGTT 297 consensus_7446#2 ------------CCGAAAAGGTGCGACCAG---CAGTGATGATGGAAGGCACGAGAAGAT 45 consensus_7446#1 TGTGTGTGTGTTCTGTGGCAGAGTGCACAGATCCATTGGCGCTTCGGGGGGGAAAAAGAA 134 * * * * *** ** ** * * ** * *** consensus_7446#0 TAAAATCTCCCCTTCAACTTGAATCATAAACTTTAACCGACCGATGGTCAATTCTAATCT 357 consensus_7446#2 TAAAATCTCCCCTTCGATTTGAAATATAAACTTTAACCGACCGATGGTCAATTCTAATCT 105 consensus_7446#1 CCGCATTTCCTAGAGGGGCAACGACG-AGGAATAAGATAACAAAAACAAAAGTAAAAACA 193 ** *** * * * ** * ** * ** * consensus_7446#0 CTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGA 417 consensus_7446#2 CTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGA 165 consensus_7446#1 TCATTGCAAACGAT--AGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAA 251 * * ** *** * * * * *** * **** *** *** * consensus_7446#0 GTGAATGACCAAAAA-GAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTG 476 consensus_7446#2 GTGAATGACCAAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTG 225 consensus_7446#1 GCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAA------ 305 * * * * ******* *** * * **** consensus_7446#0 GAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTA 536 consensus_7446#2 GAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTA 285 consensus_7446#1 ---ACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGAAGTAGAAGAATAATAAGAATAATA 362 ** * ** * ** *** *** * * * *** ** ** consensus_7446#0 AAATGAATAAAAGAGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAAC 596 consensus_7446#2 AAATGAATGAAAAGGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAAC 345 consensus_7446#1 ATAATAATAAGAAGAAGAAGAAAACAGTGAC--ATTAACGCAGTGCAGATGAAGAAAAAC 420 * * *** * * ** * *** **** ** * *** * * * * *** consensus_7446#0 CAACACACAA-CACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTT 655 consensus_7446#2 CAACACACAA-CACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTT 404 consensus_7446#1 TAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAA 480 **** **** ** * ** *********** * * *** ** * ** * * consensus_7446#0 TAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGATAAAGAACCGCAAGAC--AAGTG 713 consensus_7446#2 TAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGAAAAAGAACCGCATTTCCTAGAGG 464 consensus_7446#1 CACAACAC-TGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCG-ATTTGAAGGGTG 538 * ** * * *** ***** **** * * ***** ** * * consensus_7446#0 AAAAGAAACAAATAACTATATTCAACTTATACAAGGG-ATTTATAACATATTAA--GGTA 770 consensus_7446#2 GGCAACGACGAGGAATAAGAT--AACAAAAACAAAAGTAAAAACATCATTGCAAACGATA 522 consensus_7446#1 TGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGA-ATCATGTGTAAGGCTC 597 * ** * ** * * * * * *** * * * consensus_7446#0 GTCAAAAAGAAGAAGAAAAACGGAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTT 830 consensus_7446#2 GTTTAGGATTTTGTAGCATACGTAAA--ACTGTGGAAGCATGAAAGCAGGAAGGGATGAC 580 consensus_7446#1 CAAAGAAAGGTGGACAAACAAAGTGAGGGAAGACGAAACAAAAACTAAACAAAAAAAAAA 657 * * * * * *** * * ** consensus_7446#0 GCAAAAATCGAACATTAAAGTATGA-AAACAATGACCCAT-TAACAGGCAAAATTGTATT 888 consensus_7446#2 AGGGAGAAAGCACGTCAACCCAATT-TGTAAGTGATGCAA-A------------------ 620 consensus_7446#1 GGATGATAGGATGATAAAAACAAAACAGAAAATGGAGCAGCAGACGTTTGTTTGTGTGTG 717 * * ** * * ** ** consensus_7446#0 TTAGATAACAAAAGCAACTAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCA 948 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 TGTGTGTGTGTGTGTGTGTGTTGCAAAAGCGACTCCTTGGGAATGGTTTTTCTGTCCTTT 777 consensus_7446#0 AGATTAAGCTAAACAAGAAGTAAAACAAAAAACAAAAACTAGCAAGTAAGACGAAACAAA 1008 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 GCGCAGCGCTGTCCTGTGCTCGCGATTTTTAGATTTTTTTTTCAATGTCTCCTC------ 831 consensus_7446#0 GCAAAGCATAAACTTTAAAGTGTAAAGGGAAAGAAGAAGGAAGGAACACAAAACATACAT 1068 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 TAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAAGCACACATTCAAAAAAAAAAAA 1128 consensus_7446#2 ------------------------------------------------------------ consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 AAAAGAAAGAGACATCGTCACGTAGAG 1155 consensus_7446#2 --------------------------- consensus_7446#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||