|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1242 fasta sequence
[GGGGGGAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAATTGGTTTCCCAAATTTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATC-AAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAACTACACTGCTTGCAGAATCACTGTTCTTTATTCAAGATGCTGTCCAAATCGAAATTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCACATGCTAACACCGAAATGCTTCTTTGCCCAATCGTGCACTACGGCCCCAGAGCAAAGAACAATTTTGCCCTCCTGCTTGGTAATCTTTTTCACTATCACCCCCATCTTTTCAATACACTCTTCAGACAGGAACGGTGGGTCGGCGATTACCAGGTTGAATTGATGGGCATACGCGTCCATGTAGCCCGCATCAAATGCTCTATTGTAGTCATATTGCTGAAAGTTCTCTCCATAGGAAGCAAATCGTTCGTCAAATTCAAATAGCATAGCGTTCTTATTTTCCTTCACCACGTGCTTAAACGCAGACGGTGCAGATAGAAGCGCTACTTGAAACGTATCGGAAGGATTATTTTCTTGCAGATGTTTCACGATTAGTGCAAGTTTCTGTTTCGTTTCTTCGTTGTACCAAAATTGGCTTAGTTGCCAATTTTCTTCAAAGCATCCTGCCGACTCAGGTCCGGCTTCTTCAGAGCGCTCTTTTAAAGCCTTCTCTTGTAGGAACTGTTGCAAGATGAGCATCGTGTCTGCTGGTAAAACGC]
[-] EMBL CNS08MP8 [GGGGGGAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAATTGGTTTCCCAAATTTCGCTCAATCGTGTTCGTCTTGGACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCCACTCGTAAATATGGATCTGGGGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTACTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTTGCTCCAGAAACTAGAGTATACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGGACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATC AAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAA ]
[+] EMBL BM596127 [ ccggtcAAATTGGTTTCCCAAATTTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATC AAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAA ]
[+] EMBL BM649535 [ CCGAAATTTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATCAAAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAA ]
[+] EMBL BM587007 [ AAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCATAAACTACAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAGAGAACAAAGACTTCTTGATC AAAAATCTCCCGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAACTACACTGCTTGCAGAATCACTGTTCTTTATTCAAGATGCTGTCCAAATCGAAATTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCAC ]
[-] EMBL BX618345 [ TGTTCTTTATTCAAGATGCTGTCCAAATCGAAATTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCACATGCTAACACCGAAATGCTTCTTTGCCCAATCGTGCACTACGGCCCCAGAGCAAAGAACAATTTTGCCCTCCTGCTTGGTAATCTTTTTCACTATCACCCCCATCTTTTCAATACACTCTTCAGACAGGAACGGTGGGTCGGCGATTACCAGGTTGAATTGATGGGCATACGCGTCCATGTAGCCCGCATCAAATGCTCTATTGTAGTCATATTGCTGAAAGTTCTCTCCATAGGAAGCAAATCGTTCGTCAAATTCAAATAGCATAGCGTTCTTATTTTCCTTCACCACGTGCTTAAACGCAGACGGTGCAGATAGAAGCGCTACTTGAAACGTATCGGAAGGATTATTTTCTTGCAGATGTTTCACGATTAGTGCAAGTTTCTGTTTCGTTTCTTCGTTGTACCAAAATTGGCTTAGTTGCCAATTTTCTTCAAAGCATCCTGCCGACTCAGGTCCGGCTTCTTCAGAGCGCTCTTTTAAAGCCTTCTCTTGTAGGAACTGTTGCAAGATGAGCATCGTGTCTGCTGGTAAAACGC]
consensusID : consensus_7448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[GGTATCTTGCACATGCAAAACAAACTTGTGAAAAAGCGGTAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGGNTCCAGGAAACTAAGAGTGTAACGCGTCGAGTGGGGCGTATGTACGTGCCTGCAACCGATGTTCCGACACTAACCCGCAACCANGACTTGNACACAACCGAGCCCAATGCCTCTCCCTTAACGGAAAGGAAAAATAANANCTTTAACCTTCCCAGGTTGGTTGGCACANCACAGGAAACAACAGAACCTCATCCTATGGANTCCCNCNCCACACTTCTTCCCANACGGGNAGGACCACGGCGACACACGCAGGAGCCCTTCCGCCTGCACGCCCTAGCGNTGCCCCACGCGCCCACGCCACCCNCCATCAACCACGGTTTCCACACGACAANCAACCACACACACTCCCGGCAACGACNAACAGCCGGGAACANACTTGGCGGACANACAANAAACGCCCAGGGGTCNGGGCCAGTACTNAGCAACACCCGGGCCCGAAAACTNGCCGGCTAAAAGACAAGGAAAGTCAATATAAACCAGGGCTTTCACACACACCCCAGGGAACNCGCCG]
[+] EMBL AL692149 [GGTATCTTGCACATGCAAAACAAACTTGTGAAAAAGCGGTAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGGNTCCAGGAAACTAAGAGTGTAACGCGTCGAGTGGGGCGTATGTACGTGCCTGCAACCGATGTTCCGACACTAACCCGCAACCANGACTTGNACACAACCGAGCCCAATGCCTCTCCCTTAACGGAAAGGAAAAATAANANCTTTAACCTTCCCAGGTTGGTTGGCACANCACAGGAAACAACAGAACCTCATCCTATGGANTCCCNCNCCACACTTCTTCCCANACGGGNAGGACCACGGCGACACACGCAGGAGCCCTTCCGCCTGCACGCCCTAGCGNTGCCCCACGCGCCCACGCCACCCNCCATCAACCACGGTTTCCACACGACAANCAACCACACACACTCCCGGCAACGACNAACAGCCGGGAACANACTTGGCGGACANACAANAAACGCCCAGGGGTCNGGGCCAGTACTNAGCAACACCCGGGCCCGAAAACTNGCCGGCTAAAAGACAAGGAAAGTCAATATAAACCAGGGCTTTCACACACACCCCAGGGAACNCGCCG]
consensusID : consensus_7448#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[GAGTAGTTTATTGGTTTCCAAATTTCGCTCAATCGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTTGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATCAAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAAAAAAAAAAACAAAAAAAGGCCACATGTGCTCGGCTGCTGGTCCAT]
[+] EMBL CNS08JR3 [GAGTAGTTTATTGGTTTCCAAATTTCGCTCAATCGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTTGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATCAAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAAAAAAAAAAACAAAAAAAGGCCACATGTGCTCGGCTGCTGGTCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7448#0 GGGGGGAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAATTGGTTTCCCAAAT 60
consensus_7448#2 ------------------------------------GAGTAGTTTATTGGTTTCC-AAAT 23
consensus_7448#1 ------------------------------------------------------------
consensus_7448#0 TTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAA 120
consensus_7448#2 TTCGCTCAATCGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAA 83
consensus_7448#1 --------------GGTATCTTGCACATGCAAAACAAACTTGTGAAAAAGCGGTAA-TAA 45
**************** ** ***************** ***
consensus_7448#0 TCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTG 180
consensus_7448#2 TCCTTTCCACCTACGAAAACCACGAAGT-CCGCTATTACCAACTCGTAAATATGGATCTG 142
consensus_7448#1 TCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTG 105
**************************** *******************************
consensus_7448#0 GAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATC 240
consensus_7448#2 GAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATC 202
consensus_7448#1 GAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATC 165
************************************************************
consensus_7448#0 CGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACG 300
consensus_7448#2 CGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACG 262
consensus_7448#1 CGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACG 225
************************************************************
consensus_7448#0 AATCGACACATCTCCAACCTCG-CTCCAG-AAACTA-GAGTGTA-CGCGTCG-GTGGGGC 355
consensus_7448#2 AATCGACACATCTCCAACCTTG-CTCCAG-AAACTA-GAGTGTA-CGCGTCG-GTGGGGC 317
consensus_7448#1 AATCGACACATCTCCAACCTCGGNTCCAGGAAACTAAGAGTGTAACGCGTCGAGTGGGGC 285
******************** * ***** ****** ******* ******* *******
consensus_7448#0 GTATGTACGTGCT---GAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATG 412
consensus_7448#2 GTATGTACGTGCT---GAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATG 374
consensus_7448#1 GTATGTACGTGCCTGCAACCGATGTTCCGACACTAACCCG-CAACCANGACTTGNACACA 344
************ * ******************* ** * * **
consensus_7448#0 CTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGA---TCAAAA 469
consensus_7448#2 CTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGA---TCAAAA 431
consensus_7448#1 AC-CGAGCCCAATGCCTCTCCCTTAACGGAAAGGAAAAATAANANCTTTAACCTTCCCAG 403
* * * * ** * * ** ** * * ** * ** *
consensus_7448#0 ATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAA--- 526
consensus_7448#2 ATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAA--- 488
consensus_7448#1 GTTGGTTGGCACANCACAGGAAACAACAGAACCTCATCCTATGGANTCCCNCNCCACACT 463
* ** ** * ** * * * ** * * ** * *
consensus_7448#0 -CAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAAC 585
consensus_7448#2 -CAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAAC 547
consensus_7448#1 TCTTCCCANACGGGNAGGACCACGGCGACACACGCAGGA-GCCCTTCCGCCTGCACGCCC 522
* ** * *** * * ***** * * * * ** * * * *
consensus_7448#0 AAGAACTACACTGCTTGCAGA-ATCACTGTTCTTTATTCAAGATGCTGTCCAAATCGAAA 644
consensus_7448#2 AAGAAAAAAAAAA---ACAAA-AAAAGGCCACATGTGCTCGGCTGCTGGTCCAT------ 597
consensus_7448#1 TAGCGNTGCCCCACGCGCCCACGCCACCCNCCATCAACCACGGTTTCCACACGACAANCA 582
** * * * * * * *
consensus_7448#0 TTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCAC 704
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 ACCACACACACTCCCGG--CAACGACNAACAGCCGGGAACANACTTGGCGGA---CANAC 637
consensus_7448#0 ATGCTAACACCGAAATGCTTCTTTGCCCAATCGTGCACTACGGCCCCAGAGCAAAGAACA 764
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 A-ANAAACGCCCAGGGGTCN---GGGCCAGTACTNAGCAACA--CCCGGGCCCGAAAAC- 690
consensus_7448#0 ATTTTGCCCTCCTGCTTGGTAATCTTTTTCACTATCACCCCCATCTTTTCAATACACTCT 824
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 ----TNGCCGGCTAAAAGACAAGGAAAGTCAATATAAACCAGGGCTTTCACACACACCCC 746
consensus_7448#0 TCAGACAGGAACGGTGGGTCGGCGATTACCAGGTTGAATTGATGGGCATACGCGTCCATG 884
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 AGGGAACNCGCCG----------------------------------------------- 759
consensus_7448#0 TAGCCCGCATCAAATGCTCTATTGTAGTCATATTGCTGAAAGTTCTCTCCATAGGAAGCA 944
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 ------------------------------------------------------------
consensus_7448#0 AATCGTTCGTCAAATTCAAATAGCATAGCGTTCTTATTTTCCTTCACCACGTGCTTAAAC 1004
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 ------------------------------------------------------------
consensus_7448#0 GCAGACGGTGCAGATAGAAGCGCTACTTGAAACGTATCGGAAGGATTATTTTCTTGCAGA 1064
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 ------------------------------------------------------------
consensus_7448#0 TGTTTCACGATTAGTGCAAGTTTCTGTTTCGTTTCTTCGTTGTACCAAAATTGGCTTAGT 1124
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 ------------------------------------------------------------
consensus_7448#0 TGCCAATTTTCTTCAAAGCATCCTGCCGACTCAGGTCCGGCTTCTTCAGAGCGCTCTTTT 1184
consensus_7448#2 ------------------------------------------------------------
consensus_7448#1 ------------------------------------------------------------
consensus_7448#0 AAAGCCTTCTCTTGTAGGAACTGTTGCAAGATGAGCATCGTGTCTGCTGGTAAAACGC 1242
consensus_7448#2 ----------------------------------------------------------
consensus_7448#1 ----------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||