These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1275 fasta sequence [CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT-GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG-C-GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT-GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAA-TATGCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGGTTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCGCGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTGCGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTAAAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTACATACAACTTTAAAAAAAAAAAAA] [+] EMBL BM615649 [CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGTGGTGGCCGGGTTCATCACCTATCATTGCTTCAACCATGACGGATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGC ] [+] EMBL BM623749 [ ccgGTGGCGCTTGCGTGCGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGCACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTGGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACC ] [+] EMBL CNS09LIY [ atgctttcACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAA TATGCG ] [+] EMBL BM629331 [ CGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGACGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGTAATGCCACGTTCAGCAGGAAGCTAGTGCTTGCCAATGTGCTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTTAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAAGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGc ] [+] EMBL BX623301 [ GGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAAGTATGCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCT ] [-] EMBL CNS09LIZ [ GCATCGCACGAAGGTGTTCCTGCACTGGCTGCTGGCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAAGTATGCGTTTCAG TGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGGTTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCGCGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTGCGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTAAAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTACATACAACTTTAAAAAAAAAAAAA] consensusID : consensus_7449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [CCAGAATCCGCACGATGNAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC] [+] EMBL BX466118 [CCAGAATCCGCACGATGNAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7449#0 -------CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAG 53 consensus_7449#1 CCAGAATCCGCACGATGN--AGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAG 58 **** * * **************************************** consensus_7449#0 CTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCG 113 consensus_7449#1 CTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCG 118 ***************** ********************** ******************* consensus_7449#0 TACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAAC 173 consensus_7449#1 TACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAAC 178 ************************ *********************************** consensus_7449#0 AACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAG 233 consensus_7449#1 AACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAG 238 ****************************** ***************************** consensus_7449#0 ATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACC 293 consensus_7449#1 ATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACC 298 ******************** *************************************** consensus_7449#0 AGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAA-CACGAGCAACTGTTTGCCGA 352 consensus_7449#1 AGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC--- 355 *************************************** ***************** consensus_7449#0 CTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCAC 412 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 CGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCG 472 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 GGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAA 532 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 TGTGCTTATGTTTGGTGTGGCCGGGTTCATCACCTATCATTGCTTCAACCATGCGATGGT 592 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 GCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGC 652 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 CGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGT 712 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 GTTCCTGCACTGGCTGCTGCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTG 772 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 CATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTT 832 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 CGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAATAT 892 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 GCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTG 952 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 GGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGG 1012 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 TTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCG 1072 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 CGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTG 1132 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 CGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTA 1192 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 AAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTAC 1252 consensus_7449#1 ------------------------------------------------------------ consensus_7449#0 ATACAACTTTAAAAAAAAAAAAA 1275 consensus_7449#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||