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Anopheles gambiae
cluster # 7449 cluster # 7449       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7449#0 length = 1275 sequences # 6  
consensus_7449#1 length = 355 sequences # 1  

consensusID : consensus_7449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1275
fasta sequence
                              [CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT-GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG-C-GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT-GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAA-TATGCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGGTTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCGCGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTGCGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTAAAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTACATACAACTTTAAAAAAAAAAAAA]

[+] EMBL BM615649             [CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGTGGTGGCCGGGTTCATCACCTATCATTGCTTCAACCATGACGGATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM623749             [                          ccgGTGGCGCTTGCGTGCGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGCACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTGGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CNS09LIY             [                                                                                                                                                                                                                                                          atgctttcACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAA TATGCG                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM629331             [                                                                                                                                                                                                                                                                   CGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGACGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGTAATGCCACGTTCAGCAGGAAGCTAGTGCTTGCCAATGTGCTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTTAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAAGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX623301             [                                                                                                                                                                                                                                                                                                                                                                      GGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAAGTATGCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCT                                                                                                                                                                                                                                                                                              ]
[-] EMBL CNS09LIZ             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCATCGCACGAAGGTGTTCCTGCACTGGCTGCTGGCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAAGTATGCGTTTCAG TGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGGTTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCGCGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTGCGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTAAAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTACATACAACTTTAAAAAAAAAAAAA]


>consensus_7449#0 CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACT GCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGTACGATC GACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACG ACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGAC AAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGG GCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGG ACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGG GGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGG AGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTA TGTTTGGTGTGGCCGGGTTCATCACCTATCATTGCTTCAACCATGCGATGGTGCTGTTCT CCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGA CAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGC ACTGGCTGCTGCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCC TCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGG TGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAATATGCGTTTCA GCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGT GTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGGTTCCAGGA GGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCGCGCTGTAT GTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTGCGGACCAC GCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTAAAAATTTC CTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTACATACAACT TTAAAAAAAAAAAAA



consensusID : consensus_7449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence
                              [CCAGAATCCGCACGATGNAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC]

[+] EMBL BX466118             [CCAGAATCCGCACGATGNAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC]


>consensus_7449#1 CCAGAATCCGCACGATGNAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCT ACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCGTA CGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAA CCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAGAT AAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAG TATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7449#0      -------CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAG 53
consensus_7449#1      CCAGAATCCGCACGATGN--AGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAG 58
                             **** *  *    ****************************************

consensus_7449#0      CTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCG 113
consensus_7449#1      CTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCG 118
                      ***************** ********************** *******************

consensus_7449#0      TACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAAC 173
consensus_7449#1      TACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAAC 178
                      ************************ ***********************************

consensus_7449#0      AACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAG 233
consensus_7449#1      AACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAG 238
                      ****************************** *****************************

consensus_7449#0      ATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACC 293
consensus_7449#1      ATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACC 298
                      ******************** ***************************************

consensus_7449#0      AGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAA-CACGAGCAACTGTTTGCCGA 352
consensus_7449#1      AGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC--- 355
                      *************************************** *****************   

consensus_7449#0      CTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCAC 412
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      CGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCG 472
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      GGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAA 532
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      TGTGCTTATGTTTGGTGTGGCCGGGTTCATCACCTATCATTGCTTCAACCATGCGATGGT 592
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      GCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGC 652
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      CGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGT 712
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      GTTCCTGCACTGGCTGCTGCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTG 772
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      CATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTT 832
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      CGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAATAT 892
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      GCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTG 952
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      GGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGG 1012
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      TTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCG 1072
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      CGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTG 1132
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      CGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTA 1192
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      AAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTAC 1252
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      ATACAACTTTAAAAAAAAAAAAA 1275
consensus_7449#1      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)