These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1318 fasta sequence [CCGGCACACACACTCTTTTTTTAATTCTGTATCCAAAAAGCAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGAAACGGGACACCAAAATTCAGCCGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTACACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCTTCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGACAGCGCGTGGCCGCACACTACCAAATCAGGTGCTAATTATGGTTTCCACTGTCAAGGAGCGATTATGCCAAGGGATTATAGCAGGGCGAGGGTTGCAAAACAAAGCGCGCTCCTCGCTGGGGTGGGAAAAGCGCCTAAAAATCGTTCCGTGGTTTGGTAACGTGCGACAGTGTGTCCGGTGTAGAGCTGAGGTGCGCGCTGCCGAAGCATGTTCAGAAGCATTGGAATATTTTATTTTTCCCTTTGGTAGTGCGATAGAATTTTGCTTCATTGTTAAAAATAGCCGTACAATCAGGAACGCCCCGCGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGCAGGCATACCCGTTGTCGGTTTGAGTATGCGAGTTCAATTTTGCGTGCATGTGTGTCAATTTTGAGGCAAGCGTGTGGGTGCATCAATTCTCAACCAGGATATTGATACGCTACGATGCATCAATTATCCTTGTGATGCACCGACTGTGCGCTGTGGCTTTCCACGAACACCAAAACACACCCGCCATCCGTGCCAACTTGGATCTTTCTTTTCTGCAACGTGTACACACGCGTGTGACAGAGAGGGAAGAGGTTTGTTTTGATGCGGCAAACGTCACTTCAAACGATCGCCCCAAAAAGGGGTTTGGGGGGTATGAGCGCGTGAATAAGGGTGATTTTTATTTTGACCCGGCCTCTAGCCTGTACTGCATGATGCTAAGGTCATTTAAAGGCGTTATGCAGTACATGCATGAACAATTTAATACTCCATCATGTCCGCACAAAACAGATAAAAATGCTATCGTAATTATTTGCTTCAAAATGACCGTTATCAAAGCCATTTAAATGTTAGTTTAGCTAAACTAATGCCTTCGCTTTTCTAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGAC] [+] EMBL BM586696 [CCGGCACACACACTCTTTTTTTAATTCTGTATCCAAAAAGCAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGAAACGGGACACCAAAATTCAGCCGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTACACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCTTCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGACAGCGCGTGGCCGCACACTACCAAATCAGGTGCTAATTATGGTTTCCACTGTCAAGGAGCGATTATGCCAAGGGATTATAGCAGGGCGAGGGTTGCAAAACAAAGCGCGCTCCTCGCTGGGGTGGGAAAAGCGCCTAAAAATCGTTCCGTGGTTTGGTAACGTGCGACAGTGTGTCCGGTGTAGAGCTGAGGTGCGCGCTGCCGAAGCATGTTCAGAAGCATTGGAATATTTTATTTTTCCCTTTGGTAGTGCGATAGAATTTTGCTTCATTGTTAAAAATAGCCGTACAATCAGGAACGCCCCGCGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGC ] [+] EMBL BM579686 [ ccgATCAGGAACGCCCCGCGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGCAGGCATACCCGTTGTCGGTTTGAGTATGCGAGTTCAATTTTGCGTGCATGTGTGTCAATTTTGAGGCAAGCGTGTGGGTGCATCAATTCTCAACCAGGATATTGATACGCTACGATGCATCAATTATCCTTGTGATGCACCGACTGTGCGCTGTGGCTTTCCACGAACACCAAAACACACCCGCCATCCGTGCCAACTTGGATCTTTCTTTTCTGCAACGTGTACACACGCGTGTGACAGAGAGGGAAGAGGTTTGTTTTGATGCGGCAAACGTCACTTCAAACGATCGCCCCAAAAAGGGGTTTGGGGGGTATGAGCGCGTGAATAAGGGTGATTTTTATTTTGACCCGGCCTCTAGCCTGTACTGCATGATGCTAAGGTCATTTAAAGGCGTTATGCAGTACATGCATGAACAATTTAATACTCCATCATGTCCGCACAAAACAGATAAAAATGCTATCGTAATTATTTGCTTCAAAATGACCGTTATCAAAGCCATTTAAATGTTAGTTTAGCTAAACTAATGCCTTCGCTTTTCTAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGAC] consensusID : consensus_7454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 743 fasta sequence [CCGCCCACGCGTCCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT-AGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACGATACCGACA] [+] EMBL BM608207 [CCGCCCACGCGTCCGCGAACACACACGCACACAC TTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGGAACAGGACACCAAAAGTCTGCCGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT AGCACGATCGGGTTCGTGCCGCTGCTCTAC ] [+] EMBL BM575651 [CCGCCCACGCGTCCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAA ] [+] EMBL BM592342 [ CCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATTAAGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGA ] [+] EMBL BM586109 [ ccgGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT AGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACGATACCGACA] [+] EMBL BM634045 [ ccgAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT AGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7454#0 -------------------CCGGCACACACACTCTTTTTTT-AATTCTGTATCCAAAAAG 40 consensus_7454#1 CCGCCCACGCGTCCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAG 60 * *** ***** ******** ***** ************ consensus_7454#0 CAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGAAACGGGACACCAAAATTCAGC 100 consensus_7454#1 CAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGC 120 ************ ***************************** *********** ** ** consensus_7454#0 CGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAAT 160 consensus_7454#1 CGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAAT 180 ******* **************************************************** consensus_7454#0 CACTCCGACGATTGCAGTACACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACG 220 consensus_7454#1 CACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACG 240 ****************** ***************************************** consensus_7454#0 ACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGC 280 consensus_7454#1 ACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGC 300 ************************************************************ consensus_7454#0 TTCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGACAGCG 340 consensus_7454#1 ATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCG 360 ***************************************************** ***** consensus_7454#0 CGTGGCCGCACACTACCAAATCAGGTGCTAATTATGGTTTCCACTGTCAAGGAGCGATTA 400 consensus_7454#1 CGTGGCCGCACACTACCAAATCAG-CGCCCTCAACAAATCCCGAT-TAAAGTACTGCATC 418 ************************ ** * * ** * * *** * * * consensus_7454#0 TGCCAAGGGATTATAGCAGGGCGAGGGTTGCAAAACAAAGCGCGCTCCTCGCTGGGGTGG 460 consensus_7454#1 TTCTT-----CCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATAC 473 * * * * * * * * * * ** *** * * consensus_7454#0 GAAAAGCGCCTAAAAATCGTTCCGTGGTTTGGTAACGTGCGACAGTGTGTCCGGTGTAGA 520 consensus_7454#1 TGGAC-CGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAG-ATA-CCGCCCCCGC 530 * ** ** * *** * * * * ** *** * *** * consensus_7454#0 GCTGAGGTGCGCGCTGCCGAAGCATGTTCAGAAGCATTGGAATATTTTATTTTTCCCTTT 580 consensus_7454#1 TCTGGTGGGAATACTTCTGGTGCCTGTCCG------------TGTTTCTCTCCTTCATCG 578 *** * * ** * * ** *** * * *** * * * * consensus_7454#0 GGTAGTGCGATAGAATTTTGCTTCATTGTTAAAAATAGCCGTACAATCAGGAACGCCCCG 640 consensus_7454#1 GGCTG-GCGGCGGTGCGCGGCAACCGCGTGAACGATA---------TGAAAAA------G 622 ** * *** * ** * ** ** *** * * ** * consensus_7454#0 CGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGCAGGCATACCCGTTGTCGGTTTGAGTA 700 consensus_7454#1 TACATGGTTGGCATTAGCACGATCGGGTTCGTGCCGCTGC-TCTACTGCATCTTC----- 676 **** ** * ** * ** ** * * ** ** consensus_7454#0 TGCGAGTTCAATTTTGCGTGCATGTGTGTCAATTTTGAGGCAAGCGTGTGGGTGCATCAA 760 consensus_7454#1 TACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACGA- 735 * * * * ** ** * * ** * **** * **** * * * * * consensus_7454#0 TTCTCAACCAGGATATTGATACGCTACGATGCATCAATTATCCTTGTGATGCACCGACTG 820 consensus_7454#1 -TACCGACA--------------------------------------------------- 743 * * ** consensus_7454#0 TGCGCTGTGGCTTTCCACGAACACCAAAACACACCCGCCATCCGTGCCAACTTGGATCTT 880 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 TCTTTTCTGCAACGTGTACACACGCGTGTGACAGAGAGGGAAGAGGTTTGTTTTGATGCG 940 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 GCAAACGTCACTTCAAACGATCGCCCCAAAAAGGGGTTTGGGGGGTATGAGCGCGTGAAT 1000 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 AAGGGTGATTTTTATTTTGACCCGGCCTCTAGCCTGTACTGCATGATGCTAAGGTCATTT 1060 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 AAAGGCGTTATGCAGTACATGCATGAACAATTTAATACTCCATCATGTCCGCACAAAACA 1120 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 GATAAAAATGCTATCGTAATTATTTGCTTCAAAATGACCGTTATCAAAGCCATTTAAATG 1180 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 TTAGTTTAGCTAAACTAATGCCTTCGCTTTTCTAGCGCCCTCAACAAATCCCGATTAAAG 1240 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 TACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGAC 1300 consensus_7454#1 ------------------------------------------------------------ consensus_7454#0 ATACTGGACCGGCTCGAC 1318 consensus_7454#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||