These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 831 fasta sequence [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA-TTTAGCGATAGCAACAACAACAACAATTATAATAATAATAATATTATTATAAAAGATATA-CGCGTCACAGCACGTGGCAACACACCAAGATTCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCGTTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCACGGGGGGTAGTAAAGGGTAGATAGTTAGATCAACAAATGNTTCATTTCACGCTGTCCTTACACACAAAACAAAATAAAACAACGGCAAAGGCTTTTCCAGCGTAACACCGTGCATAGTGCAAACACGAAAAACCACAACAACAACTTCTCTAGAATATAGGTAAATATAATAACTTGTTGTACAT] [+] EMBL BX621299 [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA TTTAGCGATAGCAACAACAACAACAATTATAATAATAATAATATTATTATAAAAGATATA CGCGTCACAGCACGTGGCAACACACCAAGATTCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCGTTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCACGGGGGGTAGTAAAGGGTAGATAGTTAGATCAACAAATGNTTCATTTCACG ] [+] EMBL BM619091 [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCATTTTAGCGATAGCAACAACCACAACAATTATAATAATAATAA ] [+] EMBL BX611184 [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA TTTAGCGA ] [+] EMBL BM620804 [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAG ] [+] EMBL BM622088 [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAG TAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTC ] [+] EMBL BM603729 [ ccgGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA TTTAGCGATAGCAACAACAACAACAATTATAATAATAATAATATTATTATAAAAGATATATGGCGTCACAGCACGTGGCAACACACCAAGATTCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCGTTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCAC GGGGGTAGTAAAGGTTAGATAGTTAGATCAACAAATGTTTCATTTCACGCTGTCCTTACACACAAAACAAAATAAAACAACGGCAAAGGCTTTTCCAGCGTAACACCGTGCATAGTGCAAACACGAAAAACCACAACAACAACTTCTCTAGAATATAGGTAAATATAATAACTTGTTGTACAT] consensusID : consensus_7457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [TAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAAACAGCAACGT] [-] EMBL AGA281225 [TAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAAACAGCAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7457#0 ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTT 60 consensus_7457#1 -TAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTT 59 *********************************************************** consensus_7457#0 GTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAA 120 consensus_7457#1 GTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAA 119 ************************************************************ consensus_7457#0 TCTAGAACCGTAGACCCCAACCAAA-CGTTTGCGTTTGTTTGTGTTATCATCAGCATCGT 179 consensus_7457#1 TCTAGAACCGTAGACCCCAACCAAAACAGCAACGT------------------------- 154 ************************* * *** consensus_7457#0 CGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCG 239 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 GGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGG 299 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 TGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTT 359 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 TCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATA 419 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 GTATAAGCATAGTAATGTAGTGATAGGCATTTAGCGATAGCAACAACAACAACAATTATA 479 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 ATAATAATAATATTATTATAAAAGATATACGCGTCACAGCACGTGGCAACACACCAAGAT 539 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 TCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCG 599 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 TTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCACGGGGGGTAGTAA 659 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 AGGGTAGATAGTTAGATCAACAAATGNTTCATTTCACGCTGTCCTTACACACAAAACAAA 719 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 ATAAAACAACGGCAAAGGCTTTTCCAGCGTAACACCGTGCATAGTGCAAACACGAAAAAC 779 consensus_7457#1 ------------------------------------------------------------ consensus_7457#0 CACAACAACAACTTCTCTAGAATATAGGTAAATATAATAACTTGTTGTACAT 831 consensus_7457#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||