cluster # 7457

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Anopheles gambiae
cluster # 7457 cluster # 7457 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7457#0 length = 831 sequences # 6

consensus_7457#1 length = 154 sequences # 1

consensusID : consensus_7457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 831
fasta sequence

                              [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA-TTTAGCGATAGCAACAACAACAACAATTATAATAATAATAATATTATTATAAAAGATATA-CGCGTCACAGCACGTGGCAACACACCAAGATTCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCGTTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCACGGGGGGTAGTAAAGGGTAGATAGTTAGATCAACAAATGNTTCATTTCACGCTGTCCTTACACACAAAACAAAATAAAACAACGGCAAAGGCTTTTCCAGCGTAACACCGTGCATAGTGCAAACACGAAAAACCACAACAACAACTTCTCTAGAATATAGGTAAATATAATAACTTGTTGTACAT]

[+] EMBL BX621299             [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA TTTAGCGATAGCAACAACAACAACAATTATAATAATAATAATATTATTATAAAAGATATA CGCGTCACAGCACGTGGCAACACACCAAGATTCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCGTTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCACGGGGGGTAGTAAAGGGTAGATAGTTAGATCAACAAATGNTTCATTTCACG                                                                                                                                      ]
[+] EMBL BM619091             [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCATTTTAGCGATAGCAACAACCACAACAATTATAATAATAATAA                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX611184             [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA TTTAGCGA                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM620804             [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTTCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAGTATAAG                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM622088             [ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTCGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGGGATAACAATAATAATAATAATAG   TAATAATAATATCTAATGTATCTATCTACTAGGTGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM603729             [                                                                                                                                                                                                                                                                                                                                                                                                                  ccgGTATAAAGTTAATAGTATAAGCATAGTAATGTAGTGATAGGCA TTTAGCGATAGCAACAACAACAACAATTATAATAATAATAATATTATTATAAAAGATATATGGCGTCACAGCACGTGGCAACACACCAAGATTCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCGTTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCAC GGGGGTAGTAAAGGTTAGATAGTTAGATCAACAAATGTTTCATTTCACGCTGTCCTTACACACAAAACAAAATAAAACAACGGCAAAGGCTTTTCCAGCGTAACACCGTGCATAGTGCAAACACGAAAAACCACAACAACAACTTCTCTAGAATATAGGTAAATATAATAACTTGTTGTACAT]




>consensus_7457#0
ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTT
GTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAA
TCTAGAACCGTAGACCCCAACCAAACGTTTGCGTTTGTTTGTGTTATCATCAGCATCGTC
GTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCGG
GATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGGT
GAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTTT
CTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATAG
TATAAGCATAGTAATGTAGTGATAGGCATTTAGCGATAGCAACAACAACAACAATTATAA
TAATAATAATATTATTATAAAAGATATACGCGTCACAGCACGTGGCAACACACCAAGATT
CGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCGT
TGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCACGGGGGGTAGTAAA
GGGTAGATAGTTAGATCAACAAATGNTTCATTTCACGCTGTCCTTACACACAAAACAAAA
TAAAACAACGGCAAAGGCTTTTCCAGCGTAACACCGTGCATAGTGCAAACACGAAAAACC
ACAACAACAACTTCTCTAGAATATAGGTAAATATAATAACTTGTTGTACAT

consensusID : consensus_7457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [TAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAAACAGCAACGT]

[-] EMBL AGA281225            [TAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTGTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAATCTAGAACCGTAGACCCCAACCAAAACAGCAACGT]




>consensus_7457#1
TAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTTG
TTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAAT
CTAGAACCGTAGACCCCAACCAAAACAGCAACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7457#0      ATAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTT 60
consensus_7457#1      -TAATGTCCTCCACACCCCACCATTTCAATTTGGGGTACATAGACGAGAACAGCGCATTT 59
                       ***********************************************************

consensus_7457#0      GTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAA 120
consensus_7457#1      GTTGCCGTTAATTTTACGTTGCTGTTTTGGTTTGTGTCTTTTTTAAATTGCAATATCTAA 119
                      ************************************************************

consensus_7457#0      TCTAGAACCGTAGACCCCAACCAAA-CGTTTGCGTTTGTTTGTGTTATCATCAGCATCGT 179
consensus_7457#1      TCTAGAACCGTAGACCCCAACCAAAACAGCAACGT------------------------- 154
                      ************************* *     ***                         

consensus_7457#0      CGTGAGTCGTGGGCACTAAACATTAGGGGAGAACGTATATTCCATCTGGAACGTTTTGCG 239
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      GGATAACAATAATAATAATAATAGTAATAATAATAATATCTAATGTATCTATCTACTAGG 299
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      TGAAAAACAACTGAACCGTAAACGATTCGATTGACTTATATCTGTGTTTCACTATATGTT 359
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      TCTGTTTTCATTTATTCCCTTTGCCAAGCATTGTTGACCGTCATGAGTATAAAGTTAATA 419
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      GTATAAGCATAGTAATGTAGTGATAGGCATTTAGCGATAGCAACAACAACAACAATTATA 479
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      ATAATAATAATATTATTATAAAAGATATACGCGTCACAGCACGTGGCAACACACCAAGAT 539
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      TCGCCAAGAAGTTTCAAACGCATCCCGGACGTACGGTTGAATGAAAAGCAGCATTAATCG 599
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      TTGAGTAATATTTCCGATTTCCGTTACTCTCCCACACCTCCCCCCCACGGGGGGTAGTAA 659
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      AGGGTAGATAGTTAGATCAACAAATGNTTCATTTCACGCTGTCCTTACACACAAAACAAA 719
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      ATAAAACAACGGCAAAGGCTTTTCCAGCGTAACACCGTGCATAGTGCAAACACGAAAAAC 779
consensus_7457#1      ------------------------------------------------------------
                                                                                  

consensus_7457#0      CACAACAACAACTTCTCTAGAATATAGGTAAATATAATAACTTGTTGTACAT 831
consensus_7457#1      ----------------------------------------------------