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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1048 fasta sequence
[CCGGGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTGTTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTGTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGAAACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAAGTTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGCCAGAGAAAAGATTGAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAA-CCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAGTGGTTTGTAATGTGCAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAGAGAGGGAGCAGCAAAACGGAAGATGTAGCAACAAAACCATAAGGACGAAAGGAGAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCATAGCAGAGGGTTGTTGTTGAAATAAATGAACCCCATTTAAGTGTAACCAC]
[+] EMBL BM636211 [CCGGGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTGTTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTGTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGAAACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAAGTTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGCCAGAGAAAAGATTGAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAA CCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCACTATT ]
[+] EMBL BM614407 [ ccGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTGTTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTGTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGAAACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAAGTTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGCCAGAGAAAAGATTGAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAACCCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCAC ]
[+] EMBL BM610675 [ ccgGCGCAGTGTAAGGGGCATCATCCGTACCGGAGCCGCTAAGGGAAGGTTTGTTCTGGTTCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATCTCTCTGGTTGATAGTAATATCCCTGTGTTGGAGTGTGGTTG TTTTTTTGTTTTCGTCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTTCAGTACGGTCACTTGTGGTGAGCCAAATCACACTTATTATTGAAGGGGATAGGTTGAAAGATAGATAGAGCGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTATTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGCGCCAGGACGAAGGAGAACG AGGTTTGCTAGGTCG TGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCAAGGGGAGGCCGTAAGAGATGAAAACAAGCCAGAGA ]
[+] EMBL BM589199 [ ccgGTTGTAAAA CCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAGTGGTTTGTAATGTGCAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAGAGAGGGAGCAGCAAAACGGAAGATGTAGCAACAAAACCATAAGGACGAAAGGAGAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCATAGCAGAGGGTTGTTGTTGAAATAAATGAACCCCATTTAAGTGTAACCAC]
consensusID : consensus_7467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 982 fasta sequence
[CCGCCCACGCGTCCGCCCTCTCTCTATCTCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTTGTTTTCGTCAGTGTGCAAATATTGGCGTGTCAAGCATTAGCGGAGAGGCCCAGTTCAGTACGTTCACTTGTGGTGAGCTAAATCTCACTTATTATTGAAGACGATAAGTTGAAAGATAGATAGAGGGAGGCAGAGATAGGGAGATTACAGGATTTTACCTCAAGAGGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAACACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAGGTTTTGCTAGGTCGTTGTAATTGATAATTTTTCGTTTACTTTTTTTTTATATGCCAATATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGAAACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACCAGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACACACCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACTATTAGTGGTTTGTAATGTGCAAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAAAGATGGAGCAGCAAAACGGAACATGTAGCAACAAAACCATAAGGACGAAAGGAAAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCAATAGCAGAGGGTTGTTGTTGAAATAAATGAACC]
[+] EMBL BM583641 [CCGCCCACGCGTCCGCCCTCTCTCTATCTCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTTGTTTTCGTCAGTGTGCAAATATTGGCGTGTCAAGCATTAGCGGAGAGGCCCAGTTCAGTACGTTCACTTGTGGTGAGCTAAATCTCACTTATTATTGAAGACGATAAGTTGAAAGATAGATAGAGGGAGGCAGAGATAGGGAGATTACAGGATTTTACCTCAAGAGGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAACACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAGGTTTTGCTAGGTCGTTGTAATTGATAATTTTTCGTTTACTTTTTTTTTATATGCCAATATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGAAACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACCAGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACACACCCCATCCCACTATTTTTAGCCGTGA ]
[-] EMBL BX621681 [ ATGCCAATATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGAAACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACCAGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACACACCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACTATTAGTGGTTTGTAATGTGCAAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAAAGATGGAGCAGCAAAACGGAACATGTAGCAACAAAACCATAAGGACGAAAGGAAAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCAATAGCAGAGGGTTGTTGTTGAAATAAATGAACC]
consensusID : consensus_7467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[ACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGGAGAACGAGGTTTGCTAGGTCGTTGTAATTGATAATTTTCTGTTTTCTTTTTTTTATGTCAATATCTCCTATCAAAGGGAGGCCGTAAGAGATGAAAACAAGCCAGAAAAAAGATTAAAAAAAAAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAACCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACACCCCATCCCACTATTTTTAGCGCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAAAAAAAAAGTAAT]
[+] EMBL CNS08PEN [ACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGGAGAACGAGGTTTGCTAGGTCGTTGTAATTGATAATTTTCTGTTTTCTTTTTTTTATGTCAATATCTCCTATCAAAGGGAGGCCGTAAGAGATGAAAACAAGCCAGAAAAAAGATTAAAAAAAAAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAACCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACACCCCATCCCACTATTTTTAGCGCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAAAAAAAAAGTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7467#1 ------------------------------------------------------------
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 CCGGGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTG 60
consensus_7467#1 -------------------------------------------------CCGCCCACGCG 11
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 TTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTC 120
consensus_7467#1 TCCGCCCTCTCTCTATCTCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTT 71
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 CACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTT 180
consensus_7467#1 TTTTTTTTGTTTTCGTCAGTGTGCAAATATTGGCGTGTCAAGCATTAGCGGAGAGGCCCA 131
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 TTTTTTT-GTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCA 239
consensus_7467#1 GTTCAGTACGTTCACTTGTGGTGAGCTAAATCTCACTTATTATTGAAGACGATAAGTTGA 191
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 GTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGA 299
consensus_7467#1 AAGATAGATAGAGGGAGGCAGAGATAGGGAGATTACAGGATTTTACCTCAAGAGGAAGGA 251
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 AACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGA 359
consensus_7467#1 ATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAACACAGTATTTTCCA 311
consensus_7467#2 ---------------------------ACGATTGGCACCATCGCAGCACAGTATTTTCCA 33
consensus_7467#0 ATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCA 419
****************** **************
consensus_7467#1 GCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGA 371
consensus_7467#2 GCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGGAGAACGA 93
consensus_7467#0 GCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGA 479
**************************************************** ** * **
consensus_7467#1 AGGTTTTGCTAGGTCGTTGTAATTGATAATTTTTCGTTTACTTTTTTTTTATATGCCAAT 431
consensus_7467#2 GG--TTTGCTAGGTCGTTGTAATTGATAATTTTCTGTTTTCTTTTTTTT---ATGTCAAT 148
consensus_7467#0 AAG-TTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTT----ATGTCAAT 534
********* ******************* **** ******** *** ****
consensus_7467#1 ATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGA 491
consensus_7467#2 ATCTCCTATCAAAGGGAGGCCGTAAGAGATGAAAACAAGC------CAGAAAAAAGAT-- 200
consensus_7467#0 ATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGC------CAGAGAAAAGAT-- 586
******* * * ** * ** ********* ********* ** ** ****
consensus_7467#1 AACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACC 551
consensus_7467#2 ----------------------------TAAAAAAAAAA------AAAAACATTGGAACC 226
consensus_7467#0 -------------------------------TGAAAAAA----------ACATTGGAACC 605
****** ****** ****
consensus_7467#1 AGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACAC 611
consensus_7467#2 AGTTGCAAGTTGTAAAACCCAACG---GGTTCGGTAAAGAAAGTACCGGAAAAGCAACAC 283
consensus_7467#0 AGTTGCAAGTTGTAAAACCCAACG---GGTTCGGTAAAGAAAGTACCGGAAAAGCAACAC 662
*********************** ******************* *************
consensus_7467#1 ACCCCATCCCACTATTTTTAGC-CGTGAAAATTAATTATCACTTTTTTCATCGTCTATAC 670
consensus_7467#2 ACCCCATCCCACTATTTTTAGCGCGTGAAAATTAATTATCACTTTTTTCATCGTCTATAC 343
consensus_7467#0 TCCCCATCCCACTATTTTTAGC-CGTGAAAATTAATTATCACTTTTTTCATCGTCTATAC 721
********************* *************************************
consensus_7467#1 ATACACTATTAGTGGTTTGTAATGTGCAAAAAATGGAAATATAGAAGAAGGGGAGTGAAG 730
consensus_7467#2 ATACACATTAAAAAAAAAGTAAT------------------------------------- 366
consensus_7467#0 ATACAC-ATTAGTGGTTTGTAATGTGCAAAAA-TGGAAATATAGAAGAAGGGGAGTGAAG 779
****** * * *****
consensus_7467#1 AGGATAAAGATGGAGCAGCAAAACGGAACATGTAGCAACAAAACCATAAGGACGAAAGGA 790
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 AGGATAGAGAGGGAGCAGCAAAACGGAAGATGTAGCAACAAAACCATAAGGACGAAAGGA 839
consensus_7467#1 AAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACG 850
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 GAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACG 899
consensus_7467#1 ATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGA 910
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 ATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGA 959
consensus_7467#1 TGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCAATAGCAGAGGGTTGTTGTTGA 970
consensus_7467#2 ------------------------------------------------------------
consensus_7467#0 TGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCA-TAGCAGAGGGTTGTTGTTGA 1018
consensus_7467#1 AATAAATGAACC------------------ 982
consensus_7467#2 ------------------------------
consensus_7467#0 AATAAATGAACCCCATTTAAGTGTAACCAC 1048
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||