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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1015 fasta sequence
[GGTATGGTTTCGCAGCCCAGATGGTGGCCAGCGGGCTGATCGGGGCAGCCTTGAAGATTCCGGTGAAGTTGATGACCAGATACGGCGTCCAGGCCATGAACCAGAGCGAGATGGTGACCAGGGCGACCTTGGCCAGCTTCATCTCGGTGCTGGTGTTCTGGGCTTCCTGCGTACGCACGAGGCGACGTTCATCTTCTTGGCCTGCTCGCGCATGTTCTTCTCGTGAGCGGACACAGCCTTCAGGATGAAGGTGTACGAGTAGATGATGGTCAGCAGCGGCAGCCAGTACACGAAGATGGCGTAGATGATGATGTACGAGCGGCTCAGCCACGTCTGGGTCAGGTAGTCGGTCCCGCA-GCGGTCATGTTGCCCTCCGGCACGTATCGGTTCCATCCGAACAGCGGGGCCAGAGTCCAGAACAGCGCGAACACCCACACGCCCAGAATGCGCA-CAGGGGCACCGTTGTTGGTCATCGGCTTGCCCGCGAGACCCTTCACGATGACGTTGTAACGGTCGAAGGCAATCATCGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCACGCGAACGGGCCAAAGGTCCAGGTCTCGTGCCAGCAGTTGATCACCATCGGCGGGCCCATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGGGGTTCGGAGTGACTTGGTGTTGGTGAAGATGTACATCACACAACCGTTACCGGTCATCGAGATCATTCCGTGCATGAAGATGGCAAAACCTAGGATCGAGTGCCACAGCGGGTTCATGGGCGGGAACTGATTCCAGTGGGGATGCACCATGTGGAGCATCTCTGGTGGGACCTTATCCACCACCGACATGTTGCCACCGCTCTGCGTCCAGGCATCGAAGTGAGGTTCCACAAACGCAGCCATGTCTCAAATGCGCAAATACTAAAAATTGAATCCTTCTATCTGCGACACAGTTCCGGACGCGTGGGCGG]
[+] EMBL CNS08X89 [GGTATGGTTTCGCAGCCCAGATGGTGGCCAGCGGGCTGATCGGGGCAGCCTTGAAGATTCCGGTGAAGTTGATGACCAGATACGGCGTCCAGGCCATGAACCAGAGCGAGATGGTGACCAGGGCGACCTTGGCCAGCTTCATCTCGGTGCTGGTGTTCTGGGCTTCCTGCGTACGCACGAGGCGACGTTCATCTTCTTGGCCTGCTCGCGCATGTTCTTCTCGTGAGCGGACACAGCCTTCAGGATGAAGGTGTACGAGTAGATGATGGTCAGCAGCGGCAGCCAGTACACGAAGATGGCGTAGATGATGATGTACGAGCGGCTCAGCCACGTCTGGGTCAGGTAGTCGGTCCCGCA GCGGTCATGTTGCCCTCCGGCACGTATCGGTTCCATCCGAACAGCGGGGCCAGAGTCCAGAACAGCGCGAACACCCACACGCCCAGAATGCGCA CAGGGGCACCGTTGTTGGTCATCGGCTTGCCCGCGAGACCCTTCACGATGACGTTGTAACGGTCGAAGGCAATCATCGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCACGCGAACGGGCCAAAGGTCCAGGTCTCGTGCCAGCAGTTGATCACCATCGGCGGGCCCATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGGGGTTCGGAGTGACTTGGTGTTGGTGAAGATGTACATCACACAACCGTTACCGGTCATCGAGATCATTCCGTGCATGAAGATGGCAAAAC ]
[-] EMBL BM619659 [ TAGTCGGTTCCGCAGGCGGTCATGTTGCCCTCCGGCACGTATCGGTCTCATCCGAACAGCGGGGCCAGAGTCCAGAACAGCGCGAACACCCACACGCCCAGAATGCGCAGCA GGGCACCGTTGTTGGTCATCGGCTTGCCGGCGAGACCCTTCACGATGACGTTGTAACGGTCAAAGGCAATCATCGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCACGCGAACGGGCCAAAGGTCCAGGTCTCGTGCCAGCAGTTGATCACCATCGGCGGGCCCATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGGGGTTCGGAGTGACTTGGTGTTGGTGAAGATGTACATCACACAACCGTTACCGGTCATCGAGATCATTCCGAGCATGAAGATGGCAAAACCTAGGATCGAGTGCCACAGCGGGTTCATGGGCGGGAACTGATTCCAGTGGGGATGCACCATGTGGAGCATCTCTGGTGGGACCTTATCCACCACCGACATGTTGCCACCGCTCTGCGTCCAGGCATCGAAGTGAGGTTCCACAAACGCAGCCATGTCTCAAATGCGCAAATACTAAAAATTGAATCCTTCTATCTGCGACACAGTTCCGGACGCGTGGGCGG]
consensusID : consensus_7472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 964 fasta sequence
[CCGCGGACGCGTGGGCGCCCCCGACACCGACGGTGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAGGCCAACCTGCCGACG-AAGCGCTTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTACGTTATCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGACGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGA-GGCAAGCTGATTCAGCGCTACCTGAAGTCGATGTTCTCGCTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTAAGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTTTGAGTTCGTACGCGCGCGTGTAAACAAAGTGCTACCACCACCCCCAGCCATTGTGTCGGGCTACACGTATCGAAGGAGCGCGCGGAATATTTACTTTATAACATCCCACGGCTGGATATTGG]
[+] EMBL BM585422 [CCGCGGACGCGTGGGCGCCCCCGACACCGACGGTGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAGGCCAACCTGCCGACG AAGCGCTTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTACGTCATC ]
[+] EMBL BM643708 [ ccgCCGACGGTGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTTAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTG ]
[+] EMBL CNS098LQ [ TGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAGGCCAACCTGCCGACG AAGCGCTTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTTGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTACGTTATCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGACGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGA GGCAAGCTGATTCAGCGCTACCTGAAGTCGATGTTCTCGCTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTAAGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTTTGAGTTCGTACGCGCGCGTGTAAACAAAGTGCTACCACCACCCCCAGCCATTGTGTCGGGCTACACGTATCGAAGGAGCGCGCGGAATATTTACTTTATAACATCCCACGGCTGGATATTGG]
[-] EMBL CNS098LR [ AAGAACAAGGCCAACCTGCCGACGAAAGCG TTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTTTCGCGCAGAACTACGTTTTCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGACGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGAGGGCAAGCTGATTCAGCGCTACCTGAAGTCGATGTTCTC CTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTAAGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTGTGAGTGCGTACGCGCGCGTGTAAACAAAGTGCTACCACCACCCCC ]
consensusID : consensus_7472#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CAGGCTTAATCAATTTGACGAACCGATNCGAATATAAGCGCTAAAAAGTGGCGTCTAGTAGGTAAAAAGTGTGTCCAAACGATCAGTAGTAGTGTTGCACGATCGCCCTTAGTGGAAGGTGTATGCGACTCCGTCATCTTAATTTGTTGTGAGAACAAAGCGTTCTCCCCCACCGCATCAGGACATTCAACTTTGTGCGCGTGCATCGTGTGTTGCAGGACATCCAGCTGGTAAGCGACTCCCACTTCAACAGGAGCATCAGCATCATCATCAAAAAAAACATCCAACACCATGAACGAAACGTAAACGTGCTGGACGCGTGGCTTCGNGAACCAACTCTCCGCTGCACGTCGGCGAAAGCAGTCAGAACGAGTGATCCCGCCGTGNAGGAGTGGCCGGTTCAANTGGGNAAACGAGTCCCGACANGCGGATGGTGTCTAGGGACGCACTCATGGAATTTGNCTCTAAGGCAGCGCGCGGAACGAANCANTAACACAGACACACTTACCATAGCCAAGCATCCAACGAGTAGCGCTGCGATGGATCTTCATGCTTCTGAGCCAGAAGACACCANTGCTGAACNCTGTACTCAANCTCAGACCCGTCCGGTGTGGCACAGATGGCGCGGAATCAC]
[+] EMBL AL697547 [CAGGCTTAATCAATTTGACGAACCGATNCGAATATAAGCGCTAAAAAGTGGCGTCTAGTAGGTAAAAAGTGTGTCCAAACGATCAGTAGTAGTGTTGCACGATCGCCCTTAGTGGAAGGTGTATGCGACTCCGTCATCTTAATTTGTTGTGAGAACAAAGCGTTCTCCCCCACCGCATCAGGACATTCAACTTTGTGCGCGTGCATCGTGTGTTGCAGGACATCCAGCTGGTAAGCGACTCCCACTTCAACAGGAGCATCAGCATCATCATCAAAAAAAACATCCAACACCATGAACGAAACGTAAACGTGCTGGACGCGTGGCTTCGNGAACCAACTCTCCGCTGCACGTCGGCGAAAGCAGTCAGAACGAGTGATCCCGCCGTGNAGGAGTGGCCGGTTCAANTGGGNAAACGAGTCCCGACANGCGGATGGTGTCTAGGGACGCACTCATGGAATTTGNCTCTAAGGCAGCGCGCGGAACGAANCANTAACACAGACACACTTACCATAGCCAAGCATCCAACGAGTAGCGCTGCGATGGATCTTCATGCTTCTGAGCCAGAAGACACCANTGCTGAACNCTGTACTCAANCTCAGACCCGTCCGGTGTGGCACAGATGGCGCGGAATCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7472#0 GGTATGGTTTCGCAGCCCAGATGGTGGCCAGCGGGCTGATCGGGGCAGCCTTGAAGATTC 60
consensus_7472#2 ------------------------------------------------------------
consensus_7472#1 ------------------------------------------------------------
consensus_7472#0 CGGTGAAGTTGATGACCAGATACGGCGTCCAGGCCATGAACCAGAGCGAGATGGTGACCA 120
consensus_7472#2 ------------------------------------------------------------
consensus_7472#1 ---------------------------CCGCGGACGCGTGGGCGCCCCCGACACCGACGG 33
consensus_7472#0 GGGCGACCTTGGCCAGCTTCATCTCGGTGCTGGTGTTCTGGGCTTCCTGCGTACGCACGA 180
consensus_7472#2 ------------------------------------------------------------
consensus_7472#1 TGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTAT 93
consensus_7472#0 GGCGACGTTCATCTTCTTGGCCTGCTCGCGCATGTTCTTCTCGTGAGCGGACACAGCCTT 240
consensus_7472#2 -----------------------------------------------CAGGCTTAATCAA 13
consensus_7472#1 TTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGT 153
* * *
consensus_7472#0 CAGGATGAAGGTGTACGAGTAGATGATGGTCAGCAGCGGCAGCCAGTACACGAAGATGGC 300
consensus_7472#2 TTTGACGAACCGATNCGAATATA-AGCGCTAAAAAGTGGCGTCTAGTAGGTAAAAAGTGT 72
consensus_7472#1 TAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCT 213
** * * * * * * * * * **** *
consensus_7472#0 GT--AGATGATGATGTACGA----GCGGCTCAGCCACGTCTGGGTCAGGTA-GTCGGTCC 353
consensus_7472#2 GTCCAAACGATCA-GTAGTA----GTGTTGCACGATCGCCCTTAGTGGAAG-GTGTATGC 126
consensus_7472#1 GC--TAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCC 271
* * * * * * * ** * ** *
consensus_7472#0 CGCAGCGGTCAT---GTTGCCCTCCGGCACG--TATCGGTTCCATCCGAACAGCGGGGCC 408
consensus_7472#2 GACTCCG-TCAT---CTTAATTTGTTGTGAG--AA-CAAAGCGTTCTCCCCCACCGCATC 179
consensus_7472#1 CTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTG 331
* ** * * * * * * * * *
consensus_7472#0 AGAGTCCAGAACAGCGCGAACACCCACA-CGCCCAGAATGCGCACAGGGGCACCGTTGTT 467
consensus_7472#2 AGGACATTCAACTTTGTG--------CG-CGTGCATCGTGTGTTGCAGGACATC-CAGCT 229
consensus_7472#1 AAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAG 391
* * * * * ** * * * * **
consensus_7472#0 GGTCATCGGCTTGCCCGCGAGACCCTTCACGATGACGTTGTAACGGTCGAAGGCAATCAT 527
consensus_7472#2 GGTAAGCGACT--CCCACTTCAACAGGAGCATCAGCATCATCATCAAAAAAAACATCCAA 287
consensus_7472#1 GCCAACCTGCC--GACGAAGCGCTTCGCCCACAAGCGCC-CGGCCAAGAGGTGCTTCCGC 448
* * * * * * * * *
consensus_7472#0 CGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCA 587
consensus_7472#2 CACCATGAACGAAACGTAAACGTGCTGGACGCGTGGCTTCGNGA--ACCAACTCTCCGC- 344
consensus_7472#1 AACCACAAGCGCAAC----ATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCT 504
** * * * * * **
consensus_7472#0 CGCGAACGGGCCAAAG-GTCCAGGTCTCGTGCCAGCA--GTTGATCACCATCGGCGGGCC 644
consensus_7472#2 TGCACGTCGGCGAAAGCAGTCAGAACGAGTGATCCC---GCCGTGNAGGAGTGGCCGGTT 401
consensus_7472#1 CGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCT 564
** * * *** *** * * * ** *
consensus_7472#0 CATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGG 704
consensus_7472#2 CAAN-TGGGNA----AACGAGTCCCGACANGCGGATGGTGTCTAGGGACGCACTCATGGA 456
consensus_7472#1 CCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTA 624
* ** * ** *
consensus_7472#0 GGTTCGGAGTGACTTGGT----GTTGGTGAAGATGTAC-ATCACA-----CAACCGTTAC 754
consensus_7472#2 ATTTGNCTCTAAGGCAGC----GCGCGGAACGAANCANTAACACA-----GACACACTTA 507
consensus_7472#1 CGTTATCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGA 684
** * * * * ** * * * ** *
consensus_7472#0 CGGTCATCGAGATCATTCCGTGCATGAAGATGGCAAAACCT-AGGA-------TCGAGTG 806
consensus_7472#2 CCATAGCCAAGCATCCAACGAGTAGCGCTGCGATGGATCTTCATGC-------TTCTGAG 560
consensus_7472#1 CGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGAGGCAAGCTGATTCAGCG 744
* * * * * * * * * * * *
consensus_7472#0 CCACAGCGGGTTCATGGGCGGGAACTG-ATTCCAGTGGGGATGCACCATGTGGAGCAT-- 863
consensus_7472#2 CCAGAA-GACACCANTGCTGAACNCTGTACTCAANCTCAGACCCGTCCGGTGTGGCAC-- 617
consensus_7472#1 CTACCTGAAGTCGATGTTCTCGCTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTA 804
* * * * * * * ** *
consensus_7472#0 CTCTGGTGGGACCTTATCC-ACCACCGACATGTTGCCACCGCTCTGCGTCCAGGCATCGA 922
consensus_7472#2 AGATGGCGCGGAATCAC------------------------------------------- 634
consensus_7472#1 AGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTTTGAGTTCGTACGCGCGCGTGTA 864
*** * *
consensus_7472#0 AGTGAGGTTCCACAAACGCAGCCATGTCTCAAATGCGCAAATACTAAAAATTGAATCCTT 982
consensus_7472#2 ------------------------------------------------------------
consensus_7472#1 AACAAAGTGCTACCACCACCCCCAGCCATTGTGTCGGGCTACACGTATCGAAGGAGCGCG 924
consensus_7472#0 CTATCTGCGACACAGTTCCGGACGCGTGGGCGG------- 1015
consensus_7472#2 ----------------------------------------
consensus_7472#1 CGGAATATTTACTTTATAACATCCCACGGCTGGATATTGG 964
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||