cluster # 7474

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Anopheles gambiae
cluster # 7474 cluster # 7474 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7474#0 length = 820 sequences # 3

consensus_7474#1 length = 812 sequences # 2
consensus_7474#2 length = 350 sequences # 2

consensusID : consensus_7474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 820
fasta sequence

                              [CCGCAGAGTCGCCCTCGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGC---AACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCTTAGGAAAAATTGATTTTTAACCAATTGTTTAGGAAAGCGGTTTATTGTTTTTTTTAGATGATTATAAGATTTGCAGACTATGGCTCGAGACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCGGTTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAGAAAACTCGAGCGGTGAGCAATTTTTTCAGCTTTTTTGTAACAAAAGATGAATCTCGTCTTAGAATAGTAAAATCACACAGTTTGATTAAAAGAAGACGGCAGGCCGTATAAGAAACCTCTGGTCTAATGGATAGCTGCATCCGTTGCTCCGTAGATGGATCAATAATGATTTTTGCTAAAAAGTTATCTACTTTACNATCGTCAAGCTAGCAGAGAGTACGTGAGGCATCATGCATTATTGATTGNAAGTATAGCTGAACTATGCCTTATGAATTATTTATCNCAACTTTACCTTTTG]

[+] EMBL BM590319             [CCGCAGAGTCGCCCTCGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAAAAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX622165             [    AGAGTCG  CTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTGTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGC   AACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCTTAGGAAAAATTGATTTTTAACCAATTGTTTAGGAAAGCGGTTTATTGTTTTTTTTAGATGATTATAAGATTTGCAGACTATGGCTCGAGACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCGGTTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAGAAAACTCGAGCGGTGAGCAATTTTTTCAGCTTTTTTGTAACAAAAGATGAATCTCGTCTTAGAATAGTAAAATCACACAGTTTGATTAAAAGAAGACGGCAGGCCGTATAAGAAACCTCTGGTCTAATGGATAGCTGCATCCGTTGCTCCGTAGATGGATCAATAATGATTTTTGCTAAAAAGTTATCTACTTTACNATCGTCAAGCTAGCAGAGAGTACGTGAGGCATCATGCATTATTGATTGNAAGTATAGCTGAACTATGCCTTATGAATTATTTATCNCAACTTTACCTTTTG]
[+] EMBL BM654416             [             ccgGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGC   AACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_7474#0
CCGCAGAGTCGCCCTCGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCT
CCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGG
GGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCT
CCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATC
CCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAA
CACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCTTAGGAAAAATTGATTTTTAACCA
ATTGTTTAGGAAAGCGGTTTATTGTTTTTTTTAGATGATTATAAGATTTGCAGACTATGG
CTCGAGACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCGGTTGT
AATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAGAAAACTCGAGCGGTGAGC
AATTTTTTCAGCTTTTTTGTAACAAAAGATGAATCTCGTCTTAGAATAGTAAAATCACAC
AGTTTGATTAAAAGAAGACGGCAGGCCGTATAAGAAACCTCTGGTCTAATGGATAGCTGC
ATCCGTTGCTCCGTAGATGGATCAATAATGATTTTTGCTAAAAAGTTATCTACTTTACNA
TCGTCAAGCTAGCAGAGAGTACGTGAGGCATCATGCATTATTGATTGNAAGTATAGCTGA
ACTATGCCTTATGAATTATTTATCNCAACTTTACCTTTTG

consensusID : consensus_7474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 812
fasta sequence

                              [CCGCCCACGCGTCCGGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCCTGGGAAAGATTGATTTTTAACCAATTGTTTAGGAAAGCGATTTATTGTTATTTTTTAGATGATTATAAGATTTGCAGGCTATGGCTCGACACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCAATTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAAAAAACTCCGAGCGGGGAGCAATTTTTTCCAGCTTTTTTTGGAACGAAAGATGAAACTCCTACCGGTTTGATTAAAAAAAAAAACGGCCAGGGCCGTATAAAAAAAACCCCTGGGCCTAATGGGATAACCTGGCATCCGGTGGCTCCCGGTAAAATGGGATCCAATAAATGGAATTTTTTGGCCTAAAAAAAGTGTATTCCTACCCTTTTTTAAATCCCGCCCAAGCCTTAACCCAAAAAAATACCCGTGGGGGGGCATCCCTGGGCCTTTATTTTGGATTTGG]

[+] EMBL BM657698             [CCGCCCACGCGTCCGGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCCTGGGAAAGATTGATTTTTAACCAATTGTTTAGGAAAGCGATTTATTGTTATTTTTTAGATGATTATAAGATTTGCAGGCTATGGCTCGACACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCAATTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAAAAAACTCCGAGCGGGGAGCAATTTTTTCCAGCTTTTTTTGGAACGAAAGATGAAACTCCTACCGGTTTGATTAAAAAAAAAAACGGCCAGGGCCGTATAAAAAAAACCCCTGGGCCTAATGGGATAACCTGGCATCCGGTGGCTCCCGGTAAAATGGGATCCAATAAATGGAATTTTTTGGCCTAAAAAAAGTGTATTCCTACCCTTTTTTAAATCCCGCCCAAGCCTTAACCCAAAAAAATACCCGTGGGGGGGCATCCCTGGGCCTTTATTTTGGATTTGG]
[+] EMBL BM588074             [            CCGGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_7474#1
CCGCCCACGCGTCCGGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATG
CTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTT
CACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGC
ATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGT
ATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAA
AAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCCTGGGAAAGATTGATTTT
TAACCAATTGTTTAGGAAAGCGATTTATTGTTATTTTTTAGATGATTATAAGATTTGCAG
GCTATGGCTCGACACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAG
CAATTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAAAAAACTCCGAG
CGGGGAGCAATTTTTTCCAGCTTTTTTTGGAACGAAAGATGAAACTCCTACCGGTTTGAT
TAAAAAAAAAAACGGCCAGGGCCGTATAAAAAAAACCCCTGGGCCTAATGGGATAACCTG
GCATCCGGTGGCTCCCGGTAAAATGGGATCCAATAAATGGAATTTTTTGGCCTAAAAAAA
GTGTATTCCTACCCTTTTTTAAATCCCGCCCAAGCCTTAACCCAAAAAAATACCCGTGGG
GGGGCATCCCTGGGCCTTTATTTTGGATTTGG

consensusID : consensus_7474#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 350
fasta sequence

                              [TTCACAATTGCTTGTTGTTCCAGAGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACACAAAAAAAAAAAAAAAAAGGCCACATTGTGCCCCGC]

[+] EMBL CNS08P4Z             [TTCACAATTGCTTGTTGTTCCAGAGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACACAAAAAAAAAAAAAAAAAGGCCACATTGTGCCCCGC]
[-] EMBL CNS08P50             [                       AGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTTACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAA                                                                  ]




>consensus_7474#2
TTCACAATTGCTTGTTGTTCCAGAGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCC
AGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAA
ACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCA
GAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAG
CAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGG
AAGAAGTAAAAACACAAAAAAAAAAAAAAAAAGGCCACATTGTGCCCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7474#0      -----------------CCGCAGAGTCGCCCTCGAAGAAGAAGCACGTTTCGTAACTTTC 43
consensus_7474#2      TTCACAATTGCTTGTTGTTCCAGAGTCGC--TTGAAGAAGAAGCACGTTTCGTAACTTTC 58
consensus_7474#1      ---------CCGCCCACGCGTCCGGTCGC--TTGAAGAAGAAGCACGTTTCGTAACTTTC 49
                                              *****  * ***************************

consensus_7474#0      CCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGA 103
consensus_7474#2      CCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGA 118
consensus_7474#1      CCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGA 109
                      **************************** *******************************

consensus_7474#0      AAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGAT 163
consensus_7474#2      AAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGAT 178
consensus_7474#1      AAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGAT 169
                      ************************************************************

consensus_7474#0      CAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGC 223
consensus_7474#2      CAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGC 238
consensus_7474#1      CAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGC 229
                      ************************************************************

consensus_7474#0      AGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGT 283
consensus_7474#2      AGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAATCACTATTTGCTGT 298
consensus_7474#1      AGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGT 289
                      ********************* **************************************

consensus_7474#0      GGAAGAAGTAAAAACA-ACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCTTAGGA 342
consensus_7474#2      GGAAGAAGTAAAAACACAAAAAAAAAAAAAAAAAGGCCACATTGT----GCCCCGC---- 350
consensus_7474#1      GGAAGAAGTAAAAACA-ACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCCTGGGA 348
                      **************** * *       ** *    *    *****    **  *      

consensus_7474#0      AAAATTGATTTTTAACCAATTGTTTAGGAAAGCGGTTTATTGTT-TTTTTTAGATGATTA 401
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      AAGATTGATTTTTAACCAATTGTTTAGGAAAGCGATTTATTGTTATTTTTTAGATGATTA 408
                                                                                  

consensus_7474#0      TAAGATTTGCAGACTATGGCTCGAGACCGTGAGTGATGCTGGACACTCCTGCGACAGGCC 461
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      TAAGATTTGCAGGCTATGGCTCGACACCGTGAGTGATGCTGGACACTCCTGCGACAGGCC 468
                                                                                  

consensus_7474#0      AAGACACCAAAGCGGTTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAA 521
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      AAGACACCAAAGCAATTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAA 528
                                                                                  

consensus_7474#0      GAAAACTC-GAGCGGTGAGCAATTTTTTCAG--CTTTTTTGTAACAAAAGATGAATCTCG 578
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      AAAAACTCCGAGCGGGGAGCAATTTTTTCCAGCTTTTTTTGGAACGAAAGATGAAACTCC 588
                                                                                  

consensus_7474#0      TCTTAGAATAGTAAAATCACACAGTTTGATTAAAAGAAGACGGCAGGCCGTATAAG--AA 636
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      TACCGGTTTGATTAAAAAAAAAAACGGCCAGGGCCGTATAAAAAAAACCCCTGGGCCTAA 648
                                                                                  

consensus_7474#0      ACCTCTGGTCTAATGGATAGCTGCATCCGTTGCTCCGTAGATGGATCAATAATGATTTTT 696
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      TGGGATAACCTGGCATCCGGTGGCTCCCGGTAAAATGGGATCCAATAAATGGAATTTTTT 708
                                                                                  

consensus_7474#0      G--CTAAAAAGTTATCTACTTTACNATCGTCAAGCTAGCAGAGAGTACGTGAGGCATCAT 754
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      GGCCTAAAAAAAGTGTATTCCTACCCTTTTTTAAATCCCGCCCAAGCCTTAACCCAA-AA 767
                                                                                  

consensus_7474#0      GCATTATTGATTGNAAGTATAGCTGAACTATGCCTTATGAATTATTTATCNCAACTTTAC 814
consensus_7474#2      ------------------------------------------------------------
consensus_7474#1      AAATACCCGTGGGGGGGCATCCCTGGGCCTTTATTTTGGATTTGG--------------- 812
                                                                                  

consensus_7474#0      CTTTTG 820
consensus_7474#2      ------
consensus_7474#1      ------