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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1415 fasta sequence
[CCGACCGTTTGCATGCTACGGGAGAAGCCAAGCGCCCGTAAGTGCTGGATTAGGGTGACGTTGTGCTTTTGGGTAACGAAAGAAGCAGCACTCAACGATCGTTTAAAAATAAAAAAACAAAAATTGTTAGTGATTTATCCAGCACCAGCAACAGCCCTCAACTCGTTCCAGCAAGCATACAACACACACCATGCGGCGGAATCATCATTTTTGGGTGAAATCGGAACCGACTGCCTTGGTTCTACTGGCCGTGGCGATAAGTGTGTCCGCGATACGGGTAGATTGGAATACAAACACTGGGCCAATAGTGCCCCCAACCAGCACACCAGCACCCGTTCCTCAGCCACCATTCCGTGAGCCTGCTCCAGTTTGGGAAGATCAATCCGATGACATCCCGAATCCTAACCCCTACAGGTACATTCTACCACCACCATCGCGCCCCAAGTACAATGACATTACCCTGGAGCAGCGCAAACAGTCCCAACA-GCAGCAGCAGCAGCAGCAGCAGCAACAACAGCATCAGCCTCGGAATGGAAATGCTCAACCTGTCCCGCCAGCAAATCCAACCCAAACTCTCTCAACGGCCGCCCCGACCGGCCAGATCATTGATAAGCCACAGGCCCACCAACAACCCCTAGCTTCCGGTGCTAACAACGCAGCCCCAACGAACAGTCAGCAACCGCAACAACAACAACAACAACAACCCCAGCAGGTCGTGCCAAGTCTTGCGGTACAGTACGTGCCCAACAAAGGTCTCAAGTATTACGCCGTCGTACCGAAGCACACGGAAGTGTCGTACGGAGCGGCCAAGCAAGCGCTGCTCGCTACCAACGATCTCTACGACCAGCAGCTCGCCCAGAGCAAGTACGATAAGTACGATAAGCTCAACGGAAAGTACAATCCTAAGCTGAAGAAGTACAAGGCCTACGAGAAGGTTAAATACATGCCGTACATTGTGTATTACGATGCTACCAAGCAGCAGTACTACTACACCAATGTTCCTTCAAATATGCTCGTAAATAATAGGGTTTAATGGGTCTGAGAGCAGGGTCGGAGGGTTAGGAAAAGGCCAAACGCAAACAGAGGAAAAACTAAAACAGCATTAGAGAAAGTGGCTCCATATCATGCGATCAGAA-ACAAAAAATCCTTTCTTGTACCAATTTTGTTCCCCAAAACAACTAGAGCGAGAAGGGTACCTTGGCTCATGTTGGTAGTTGAT-CTTTTGTTACCAATATTTAACTAACCATACGAGACTTTTACTCATAACCTGACTAATGGTTTGAGCTACATCCGGTGGGAATGCTGAATTTTATGAAAAAAAAATAAACTGGAGCTCCACACTTGCACACAACATGCCATGTTCAACATTTCCATAAAAAAAATAGCGAAAACAAAACACAAGTGGCTTAGCACAG]
[+] EMBL BM650023 [CCGACCGTTTGCATGCTACGGGAGAAGCCAAGCGCCCGTAAGTGCTGGATTAGGGTGACGTTGTGCTTTTGGGTAACGAAAGAAGCAGCACTCAACGATCGTTTAAAAATAAAAAAACAAAAATTGTTAGTGATTTATCCAGCACCAGCAACAGCCCTCAACTCGTTCCAGCAAGCATACAACACACACCATGCGGCGGAATCATCATTTTTGGGTGAAATCGGAACCGACTGCCTTGGTTCTACTGGCCGTGGCGATAAGTGTGTCCGCGATACGGGTAGATTGGAATACAAACACTGGGCCAATAGTGCCCCCAACCAGCACACCAGCACCCGTTCCTCAGCCACCATTCCGTGAGCCTGCTCCAGTTTGGGAAGATCAATCCGATGACATCCCGAATCCTAACCCCTACAGGTACATTCTACCACCACCATCGCGCCCCAAGTACAATGACATTACCCTGGAGCAGCGCAAACAGTCCCAACAGGCAGC ]
[+] EMBL BX602065 [ CGGAACCGACTGCCTTGGTTCTACTGGCCGTGGCGATAAGTGTGTCCGCGATACGGGTAGATTGGAACACAAACACTGGGCCAATAGTGCCCCCAACCAGCACACCAGCACCCGTTCCTCAGCCACCATTCCGTGAGCCTGCTCCAGTTTGGGAAGATCAATCCGATGACATCCCGAATCCTAACCCCTACAGGTACATTCTACCACCACCATCGCGCCCCAAGTACAATGACATTACCCTGGAGCACCGCAAACAGTCCCAACA GCAGCAGCAGCAGCAGCAGCAGCAACAACAGCATCAGCCTCGGAATGGAAATGCTCAACCTGTCCCGCCAGCAAATCCAACCCAAACTCTCTCAACGGCCGCCCCGACCGGCCAGATCATTGATAAGCCACAGGCCCACCAACAACCCCTAGCTTCCGGTGCTAACAACGCAGCCCCAACGAACAGTCAGCAACCGCAACAACAACAACAACAACAACCCCAGCAGGTCGTGCCAAGTCTTGCGGTACAGTACGTGCCCAACAAAGGTCTCAAGTATTACGCCGTCGTA ]
[+] EMBL BM628475 [ ccgGGAAATGCTCAACCTGTCCCGCCAGCAAATCCAACCCAAACTCTCTCAACGGCCGCCCCGACCGGCCAGATCATTGATAAGCCACAGGCCCACCAACAACCCCTAGCTTCCGGTGCTAACAACGCAGCCCCAGCGAACAGTCAGCAACCG CAACAACAACAGCAACCCCAGCAGGTCGTGCCAAGTCTTGCGGTACAATACGTGCCCAACAAAGGTCTCAAGTATTATGCCGTCGTACCGAAGCACACGGAAGTGTCGTACGGAGCGGCCAAGCAAGCGCTGCTCGCTACCAACGATCTCTACGACCAGCAGCTCGCCCAGAGCAAGTACGATAAGTACGATAAGCTCAACGGAAAGTACAATCCTA ]
[+] EMBL BX624661 [ GGTGCTAACAACGCAGCCCCAACGAACAGTCAGCAACCGCAACAACAACAACAACAACAACCCCAGCAGGTCGTGCCAAGTCTTGCGGTACAGTACGTGCCCAACAAAGGTCTCAAGTATTACGCCGTCGTACCGAAGCACACGGAAGTGTCGTACGGAGCGGCCAAGCAAGCGCTGCTCGCTACCAACGATCTCTACGACCAGCAGCTCGCCCAGAGCAAGTACGATAAGTACGATAAGCTCAACGGAAAGTACAATCCCAAGCTGAAGAAGTACAAGGCCTACGAGAAGGTTAAATACATGCCGTACATTGTGTATTACGATGCTACCAAGCAGCAGTACTACTACACCAATGTTCCTTCAAATATGCTCGTAAATAATAGGGTTTAATGGGTCTGAGAGCAGGGTCGGAGGGTTAGGAAAAGGCCAAACGCAAACAGAGGAAAAACTAAAACAGCATTAGAGAAAGTGGCTCCATATCATGCGATCAGAA ACAAAAAATCCTTTCTTGTACCAATTTTGTTCCCCAAAACAACTAGAGCGAGAAGGGTACCTTGGCTCATGTTGGTAGTTGAT CTTTTGTTACCAATATTTAACTAACCATACGAGACTTTTACTCATAACCTGACTAATGGTTTGAGCTACATCCGGTGGGAATGCTGAATTTTATGAAAAAAAAATAAACTGGAGCTCCACACTTGCACACAACATGCCATGTTCAACATTTCCATAAAAAAAATAGCGAAAACAAAACACAAGTGGCTTAGC ]
[+] EMBL BM642103 [ ccGCAGCAGTATTACTACACCAATGTTCCTTCAAATATGCTCGTAAATAATAGGGTTTAATGGGTCTGAGAGCAGGGTCGGAGGGTTAGGAAAAGGCCAAACGCAAACAGAGGAAAAACTAAAACAGCATTAGAGAAAGTGGCTCCATATCATGCGATCAGAAGAAAAAAAATCCTTTCTTGTACCAACTTTGTTCCCCAAAACAACTAGAGCGAGAAGAGTGCCTTAGCTCATGTTGGTAGTTGATGTTTTTGTTACCGATATTTAACTAACCATACGAGACTTTTACTCATAACCTGACTAATGGTTTGAGCTACATCCGGTGGGAATGCTGAATTTTATGAAAAAAAAATAAACTGGAGCTCCACACTTGCACACAACATGCCATGTTCAACATTTCCATAAAAAAAATAGCGAAAACAAAACACAAGTGGCTTTGCACAG]
consensusID : consensus_7483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[CCGCCCACGCGTCCGCAGTACGTGCCCAACAAAGGTCTCAAGTATTACGCCGTCGTACCGAAGCACACGGAAGTGTCGTACGGAGCGGCCAAGCAAGCGCTGCTCGCTACCAACGATCTCTACGACCAGCAGCTCGCCCAGAGCAAGTACGATAAGTACGATAAGCTCAACGGAAAGTACAATCCCAAGCTGAAGAAGTACAAGGCCTACGAGAAGGTTAAATACATGCCGTACATTGTGTATTACGATGCTACCAAGCAGCAGTATTACTACACCAATGTTCCTTCAAATATGCTCGTAAATAATAGGGTTTAATGGGTCTGAGAGCAGGGTCGGAGGGTTAGGAAAAGGCCAAACGCAAACAGAGGAAAAACTAAAACAGCATTAGAGAAGTGGCTCCATATCATGCGATCAGAAGAAAAAAAATCCTTTCTTGTACCAACTTTGTTCCCCAAAACAACTAGAGCGAGAAGAGTGCCTTAGCTCATGTTGGTAGTTGATGTTTTTGTTACCGATATTTAACTAACCATACGAGACTTTTACTCATAACCTGACTAATGGTTTGAGCTACATCCGGTGGGAATGCTGA]
[+] EMBL BM639517 [CCGCCCACGCGTCCGCAGTACGTGCCCAACAAAGGTCTCAAGTATTACGCCGTCGTACCGAAGCACACGGAAGTGTCGTACGGAGCGGCCAAGCAAGCGCTGCTCGCTACCAACGATCTCTACGACCAGCAGCTCGCCCAGAGCAAGTACGATAAGTACGATAAGCTCAACGGAAAGTACAATCCCAAGCTGAAGAAGTACAAGGCCTACGAGAAGGTTAAATACATGCCGTACATTGTGTATTACGATGCTACCAAGCAGCAGTATTACTACACCAATGTTCCTTCAAATATGCTCGTAAATAATAGGGTTTAATGGGTCTGAGAGCAGGGTCGGAGGGTTAGGAAAAGGCCAAACGCAAACAGAGGAAAAACTAAAACAGCATTAGAGAAGTGGCTCCATATCATGCGATCAGAAGAAAAAAAATCCTTTCTTGTACCAACTTTGTTCCCCAAAACAACTAGAGCGAGAAGAGTGCCTTAGCTCATGTTGGTAGTTGATGTTTTTGTTACCGATATTTAACTAACCATACGAGACTTTTACTCATAACCTGACTAATGGTTTGAGCTACATCCGGTGGGAATGCTGA]
consensusID : consensus_7483#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[TGTCGTCGTCAACGGTGTTATCACGCGCTGCTTTCGGCCTTTCCGGCGTCTATTTCGGACCGTTCGCATGCTACGGGAGAAGCCAAGCACCCTAACGAAAGAAGCAGCACTCAACGATCGTTTAAAAATAAAAAGTCAAAATTGTTAGTGATTTATCCAGCACCAGCAACAGCCCTCAACTCGTTCCAGCAAGCATACAACAGCACACACACCATGCGGCGGAATCATCATTTTTGGGTGAAATCGGAACCGACTGCCTTGGTTCTACTGGCCGTGGCGATAAGTGTGTCCGCGATACGGGTAGATTGGAACACAAACACTGGGNCAATAGTGCCCCCAACCAGCACACCAGCACCCGTTCCTCAGCCACCATTCCGTGAGCCTGCTCCAGTTTGGGAAGATCCATCCGATGACATCCCGAATCCTAACCCCTACAGGTACATTCTACCACCACCATCGCGCCCCAAGTACCATGACATTAACNNGGAGCAACGCAAACAGTTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCATCAGNC]
[+] EMBL BX619520 [TGTCGTCGTCAACGGTGTTATCACGCGCTGCTTTCGGCCTTTCCGGCGTCTATTTCGGACCGTTCGCATGCTACGGGAGAAGCCAAGCACCCTAACGAAAGAAGCAGCACTCAACGATCGTTTAAAAATAAAAAGTCAAAATTGTTAGTGATTTATCCAGCACCAGCAACAGCCCTCAACTCGTTCCAGCAAGCATACAACAGCACACACACCATGCGGCGGAATCATCATTTTTGGGTGAAATCGGAACCGACTGCCTTGGTTCTACTGGCCGTGGCGATAAGTGTGTCCGCGATACGGGTAGATTGGAACACAAACACTGGGNCAATAGTGCCCCCAACCAGCACACCAGCACCCGTTCCTCAGCCACCATTCCGTGAGCCTGCTCCAGTTTGGGAAGATCCATCCGATGACATCCCGAATCCTAACCCCTACAGGTACATTCTACCACCACCATCGCGCCCCAAGTACCATGACATTAACNNGGAGCAACGCAAACAGTTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCATCAGNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7483#0 CCGACCGTTTGCATGCTACGGGAGAAGCCAAGCGCCCGTAAGTGCTGGATTAGGGTGACG 60
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 TTGTGCTTTTGGGTAACGAAAGAAGCAGCACTCAACGATCGTTTAAAAATAAAAAAACAA 120
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 AAATTGTTAGTGATTTATCCAGCACCAGCAACAGCCCTCAACTCGTTCCAGCAAGCATAC 180
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 AACACACACCATGCGGCGGAATCATCATTTTTGGGTGAAATCGGAACCGACTGCCTTGGT 240
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 TCTACTGGCCGTGGCGATAAGTGTGTCCGCGATACGGGTAGATTGGAATACAAACACTGG 300
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 GCCAATAGTGCCCCCAACCAGCACACCAGCACCCGTTCCTCAGCCACCATTCCGTGAGCC 360
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 TGCTCCAGTTTGGGAAGATCAATCCGATGACATCCCGAATCCTAACCCCTACAGGTACAT 420
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 TCTACCACCACCATCGCGCCCCAAGTACAATGACATTACCCTGGAGCAGCGCAAACAGTC 480
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 CCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCATCAGCCTCGGAATGGAAATGC 540
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 TCAACCTGTCCCGCCAGCAAATCCAACCCAAACTCTCTCAACGGCCGCCCCGACCGGCCA 600
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 GATCATTGATAAGCCACAGGCCCACCAACAACCCCTAGCTTCCGGTGCTAACAACGCAGC 660
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 CCCAACGAACAGTCAGCAACCGCAACAACAACAACAACAACAACCCCAGCAGGTCGTGCC 720
consensus_7483#1 -------------------------------------------------------CCGCC 5
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 AAGTCTTGCGGTACAGTACGTGCCCAACAAAGGTCTCAAGTATTACGCCGTC-GTACCGA 779
consensus_7483#1 CACGCGTCCG---CAGTACGTGCCCAACAAAGGTCTCAAGTATTACGCCGTC-GTACCGA 61
consensus_7483#2 -TGTCGTCGTCAACGGTGT-TATCACGCGCTGCTTTCGGCCTTTCCGGCGTCTATTTCGG 58
* * * ** * * * * * ** ** ** **** * **
consensus_7483#0 AGCACACGGAAGTGTCGTACGGAGCGGCCAAGCAAGCGCTGCTCGCTACCAACGAT-CTC 838
consensus_7483#1 AGCACACGGAAGTGTCGTACGGAGCGGCCAAGCAAGCGCTGCTCGCTACCAACGAT-CTC 120
consensus_7483#2 ACCGTTCGCATGCTACG---GGAGAAGCCAAGCA--CCCTAA-CGAAAGAAGCAGCACTC 112
* * ** * * ** **** ******** * ** ** * * * ***
consensus_7483#0 TACGACCAGCAGCTCGCCCAGAGCAAGTACGATAAGTACGATAAGCTCAACGGAAAGTAC 898
consensus_7483#1 TACGACCAGCAGCTCGCCCAGAGCAAGTACGATAAGTACGATAAGCTCAACGGAAAGTAC 180
consensus_7483#2 AACGATCGTTTAAAAATAAAAAGTCAAAATTGTTAGT--GATTTATCCAGCACCAGCAAC 170
**** * * ** * * * *** *** ** * * **
consensus_7483#0 AATCCTAAGCTGAAGAAGTACAAGGCCTACGAGAAGGTTAAATACATGCCGTACATTGTG 958
consensus_7483#1 AATCCCAAGCTGAAGAAGTACAAGGCCTACGAGAAGGTTAAATACATGCCGTACATTGTG 240
consensus_7483#2 AGCCCTCAACTC--GTTCCAGCAAGCATACAACAGC-----ACACACACCATGCGGCG-G 222
* ** * ** * * * ** *** * * * *** ** * * * *
consensus_7483#0 TATTACGATGCTACCAAGCAGCAGTACTACTACACCAATGTTCCTTCAAATATGCTCGTA 1018
consensus_7483#1 TATTACGATGCTACCAAGCAGCAGTATTACTACACCAATGTTCCTTCAAATATGCTCGTA 300
consensus_7483#2 AATCATCATTTTTGGGTGAAATCGGAACCGACTGCCTTGGTTCTACTGGCCGTGGCGATA 282
** * ** * * * * * ** **** ** **
consensus_7483#0 AATAATAGGGTTTAATGGGTCTGAGAGCAGGGTCGGAGGGTTAGGAAAAGGCCAAACGCA 1078
consensus_7483#1 AATAATAGGGTTTAATGGGTCTGAGAGCAGGGTCGGAGGGTTAGGAAAAGGCCAAACGCA 360
consensus_7483#2 AGTGTGTCCGCGATACGGGT---AGATTGGAACACAAACACTGGGNCAATAGTGCCCCCA 339
* * * * **** *** * * * ** ** * **
consensus_7483#0 AACAGAGGAAAAACTAAAACAGCATTAGAGAAAGTGGCTCCATATCATGCGATCAGAA-A 1137
consensus_7483#1 AACAGAGGAAAAACTAAAACAGCATTAGAGAA-GTGGCTCCATATCATGCGATCAGAAGA 419
consensus_7483#2 ACCAGC----ACACCAGCACCCGTTCCTCAGCCACCATTCCGTGA-GCCTGCTCCAGTTT 394
* *** * ** * ** * *** * * **
consensus_7483#0 CAAAAAATCCTTTCTTGTACCAATTTTGTTCCCCAAAACAACTAGAGCGAGAAGGGTACC 1197
consensus_7483#1 AAAAAAATCCTTTCTTGTACCAACTTTGTTCCCCAAAACAACTAGAGCGAGAAGAGTGCC 479
consensus_7483#2 GGGAAGATCCATCCG-ATGACATCCCGAATCCT---AACCCCTACAGGTACA----TTCT 446
** **** * * * ** *** *** *** ** * * * *
consensus_7483#0 TTGGCTCATGTTGGTAGTTGAT-CTTTTGTTACCAATATTTAACTAACCATACGAGACTT 1256
consensus_7483#1 TTAGCTCATGTTGGTAGTTGATGTTTTTGTTACCGATATTTAACTAACCATACGAGACTT 539
consensus_7483#2 ACCACCACCATCGCGCCCCAAGTACCATGACATTAACNNGGAGCAACGCAAAC---AGTT 503
* * * * ** * * * * * ** ** * **
consensus_7483#0 TTACTCATAACCTGACTAATGGTTTGAGCTACATCCGGTGGGAATGCTGAATTTTATGAA 1316
consensus_7483#1 TTACTCATAACCTGACTAATGGTTTGAGCTACATCCGGTGGGAATGCTGA---------- 589
consensus_7483#2 CCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCATCAGNC--------------- 548
* * * * * * *** *** * *
consensus_7483#0 AAAAAAATAAACTGGAGCTCCACACTTGCACACAACATGCCATGTTCAACATTTCCATAA 1376
consensus_7483#1 ------------------------------------------------------------
consensus_7483#2 ------------------------------------------------------------
consensus_7483#0 AAAAAATAGCGAAAACAAAACACAAGTGGCTTAGCACAG 1415
consensus_7483#1 ---------------------------------------
consensus_7483#2 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||