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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1120 fasta sequence
[CTGGTTTCGACAGAAAAGCAACACGATACACATGCAAACACATAAGCGTTTTCACTGTAAACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATTCAAACAGTTGAAATGCAACACTAGCCACCAGGGGTGTTAACCGTGTAGAGAAAAAGCCTCCTCCAATTATTGGACGTAATGGATTAACGGCAAAAGGCACGGAAAGTGGAGCATGAGCACTGTTAAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAACACACAGAATGTAAAGGCCAATATAAATTAGATAAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAA-TGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAAC-AAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTTATCTTTTCAGCGTTTGACTTTGTTTTACACTG--CTTTTTTGCATTGTGTTTTTACTTTGGTGTCTGATGTTTGAGTTTGATTACAATATACCAGATGTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAACGCGTAATTGCATCACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACACACACACACTACCAGTGAGATAGAGCGAAAGACCGTCGAGCGTCAGACAGCCACAGCAACAGCAGCAGAAACATGAAAATTTCAAATATCAAATTTTCTTAATAAAACATATTCTTTTGTGATATGT]
[+] EMBL BX614559 [CTGGTTTCGACAGAAAAGCAACACGATACACATGCAAACACATAAGCGTTTTCACTGTAAACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATTCAAACAGTTGAAATGCAACACTAGCCACCAGGGGTGTTAA ]
[+] EMBL BX611903 [ CACTGTAAACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATTCAAACAGTTGAAATGCAACACTAGCCACCAGGTGTGTTAACCGTGTAGAGAAAAAGCCTCCTCCAATTATTGGACGTAATGGATTAACGGCAAAAGGCACGGAAAGTGGAGCATGAGCACTGTTAAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAACACACAGAATGTAAAGGCCAATATAAATTAGATAAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAA TGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAAC AAAAACAGTTCAAATTACGGACAGCGATCC ]
[+] EMBL BX616694 [ TTAGATAAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGTAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAA TGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGTAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAAC AAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTTATCTTTTCAGCGTTTGACTTTGTTTTACACTG CTTTTTTGCATTGTGTTTTTACTTTGGTGTCTGATGTTTGAGTTTGATTACAATATACCAGATGTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAACGCGTAATTGCATCACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACACACACACACTACCAGTGAGATAGAGCGAAAGACCGTCGAGCGTCAGACAGCCACAGCAACAGCAGCAGAAACATGAAAATTTCAAATATCAAATTTTCTTAATAAAACATATTCTTT ]
[+] EMBL BX625508 [ gATAAATATATATATTATATACAAACATACACAAATTCACACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAAGTGAAACCTAGTCGTACACTCGAACTCGAACGAGAAGGAGGGGCAGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAACACAGCAACAAAAAACAGTTCAAATTACGGATAGCGATCCATTTTCCAATGCGACGTGTGTGTTATCTTTTCAGCGTTTGGCTTTGTTTTACACTGCTCTTTTTTGCAATACGTTTTTACTTTGGTATCTGATGTTTGAGTTTGATTACAATATACCAGGTGTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAATGCGTAATTGCATTACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAACAGAAATACAATAACTGTAGCATAAACAATAGA ]
[+] EMBL BX613102 [ GTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAACGCGTAATTGCATCACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACACACACACACTACCAGTGAGATAGAGCGAAAGACCGTCGAGCGTCAGACAGCCACAGCAACAGCAGCAGAAACATGAAAATTTCAAATATCAAA TTTCTTAATAAAACATATTCTTTTGTGATATGT]
consensusID : consensus_7485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1017 fasta sequence
[AATTCCCGCGGTTAAATGGCACGGAAAGTGGAGCCTGAGCACTGTTAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAATACACAGAATGTAAAGGCCAATATAAATTAGATAACATATATATATATATTATATACAAACATACACAAATTCGCACAAGACACGACGCGTTAAGTAACATGCNGGATTNAGCGGAGGGCANCAGATGNTGGCNCNGTNAGTNTACTTACACAAATGACCCCAAGTCGCTACCACCTCGAACTCGANAACGAGGAAGAAGGGGCCAGGGCGAGGGNCGCATACCTTATACAGATAATTCTTAGTCATCTTAACCAATTTCACAACAAAGCCACACAACAACCAGCACACACAAAAACCAGTTCAACATTAACGGAACAGCGATCCCAATTTTTCCCNANCAGCGCACCGGCTGGTNGTAGTAAAAATCTTATCATCTNCAACGCCGGTATCATGGACCTTTATTGGTTCTTTACCAACCTGCTATATCATCGCACTATTGTGCGTACAANTCACCTCATCANNGGTCGNTCCTCGCANTTGTAACTAGGACGGTATCNAGCATTATACCANACTAATAGCCCCACTANACTTGGTTTTGGGNGCAAACGTNAGGCNACAAAANATTAAAGCCCCAACCCAACATACNAAGAACCNGACATTGGTTTCAAGGNTTTACAACAAAAAACCACCACAGTGGGGGGCGTTGTTGTTACCAACACACANTCAACACCTTNTTTTGATNTCACGGGAATTACCTTACCGCCTACCCTTTTATGAGCAAACATGACCACGCNCCANCNAGGTACCAAAACGCNGCAACGGGTTTAAAAGTTCTGGGCCCGCTTTACCACACCACCTTGCCNATTCTTTTGCAAAGAACGGCAGCATTGNCAATTTCCCNANGGGCCCCCCCCCATTTAGGGGGGTCTGACGGNTN]
[+] EMBL AL692297 [AATTCCCGCGGTTAAATGGCACGGAAAGTGGAGCCTGAGCACTGTTAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAATACACAGAATGTAAAGGCCAATATAAATTAGATAACATATATATATATATTATATACAAACATACACAAATTCGCACAAGACACGACGCGTTAAGTAACATGCNGGATTNAGCGGAGGGCANCAGATGNTGGCNCNGTNAGTNTACTTACACAAATGACCCCAAGTCGCTACCACCTCGAACTCGANAACGAGGAAGAAGGGGCCAGGGCGAGGGNCGCATACCTTATACAGATAATTCTTAGTCATCTTAACCAATTTCACAACAAAGCCACACAACAACCAGCACACACAAAAACCAGTTCAACATTAACGGAACAGCGATCCCAATTTTTCCCNANCAGCGCACCGGCTGGTNGTAGTAAAAATCTTATCATCTNCAACGCCGGTATCATGGACCTTTATTGGTTCTTTACCAACCTGCTATATCATCGCACTATTGTGCGTACAANTCACCTCATCANNGGTCGNTCCTCGCANTTGTAACTAGGACGGTATCNAGCATTATACCANACTAATAGCCCCACTANACTTGGTTTTGGGNGCAAACGTNAGGCNACAAAANATTAAAGCCCCAACCCAACATACNAAGAACCNGACATTGGTTTCAAGGNTTTACAACAAAAAACCACCACAGTGGGGGGCGTTGTTGTTACCAACACACANTCAACACCTTNTTTTGATNTCACGGGAATTACCTTACCGCCTACCCTTTTATGAGCAAACATGACCACGCNCCANCNAGGTACCAAAACGCNGCAACGGGTTTAAAAGTTCTGGGCCCGCTTTACCACACCACCTTGCCNATTCTTTTGCAAAGAACGGCAGCATTGNCAATTTCCCNANGGGCCCCCCCCCATTTAGGGGGGTCTGACGGNTN]
consensusID : consensus_7485#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence
[CCGCGGTTATAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAATGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAACAAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTATCTCTCTCAGCCGTCTTGACTTTGTATACTTACACTGCTTNNCTANGCATTGCTGCTACANAACCTCTNGGCTGTCTGCATGTNCNGAGTNATGATTACAATATACCAGATGTCNCNGGACACTCGGAAAATAACCACAAAGCGATGTAGTCAAAACAATTGGTTTTAAAATACTTNCGAAGATCTCCTCTTTCACAANCACACAGTCAACGCGTAATTGCATCACATCATTGNTANACGATGATCAGGCCCATTATGGTTGCGTACAACTCGACATACTCTCCATNAGCATGGGCCACCAATGGGANTAAATTCATATNGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACANACACACACTACCAGGTGAGCATANAGCGAANGACCGCGAGCGTCAGACAGCCACAGCANAG]
[+] EMBL AL694448 [CCGCGGTTATAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAATGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAACAAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTATCTCTCTCAGCCGTCTTGACTTTGTATACTTACACTGCTTNNCTANGCATTGCTGCTACANAACCTCTNGGCTGTCTGCATGTNCNGAGTNATGATTACAATATACCAGATGTCNCNGGACACTCGGAAAATAACCACAAAGCGATGTAGTCAAAACAATTGGTTTTAAAATACTTNCGAAGATCTCCTCTTTCACAANCACACAGTCAACGCGTAATTGCATCACATCATTGNTANACGATGATCAGGCCCATTATGGTTGCGTACAACTCGACATACTCTCCATNAGCATGGGCCACCAATGGGANTAAATTCATATNGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACANACACACACTACCAGGTGAGCATANAGCGAANGACCGCGAGCGTCAGACAGCCACAGCANAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7485#0 CTGGTTTCGACAGAAAAGCAACACGATACACATGCAAACACATAAGCGTTTTCACTGTAA 60
consensus_7485#2 ------------------------------------------------------------
consensus_7485#1 ------------------------------------------------------------
consensus_7485#0 ACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATT 120
consensus_7485#2 ------------------------------------------------------------
consensus_7485#1 ------------------------------------------------------------
consensus_7485#0 CAAACAGTTGAAATGCAACACTAGCCACCAGGGGTGTTAACCGTGTAGAGAAAAAGCCTC 180
consensus_7485#2 ------------------------------------------------------------
consensus_7485#1 ------------------------------------------------------------
consensus_7485#0 CTCCAATTATTGGACGTAATGGATTAACGGCAAAAGGCACGGAAAGTGGAGCATGAGCAC 240
consensus_7485#2 ------------------------------------------------------------
consensus_7485#1 ------------------AATTCCCGCGGTTAAATGGCACGGAAAGTGGAGCCTGAGCAC 42
consensus_7485#0 TGTTAAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAA 300
consensus_7485#2 ------------------------------------------------------------
consensus_7485#1 TGTTAAAA-CGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAA 101
consensus_7485#0 GCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAACACACAGAATGTAAAGGCCAAT 360
consensus_7485#2 ------------------------------------------------------------
consensus_7485#1 GCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAATACACAGAATGTAAAGGCCAAT 161
consensus_7485#0 ATAAATTAGATA-AATATATATATATATTATATACAAACATACACAAATTCGCACAAGA- 418
consensus_7485#2 ---CCGCGGTTATAATATATATATATATTATATACAAACATACACAAATTCGCACAAGA- 56
consensus_7485#1 ATAAATTAGATAACATATATATATATATTATATACAAACATACACAAATTCGCACAAGAC 221
* ** *********************************************
consensus_7485#0 ACGACGCGTTAAGTAACATGCAGGATTAGG--GAGGGAAA--GATGATGGAA-AGTAG-- 471
consensus_7485#2 ACGACGCGTTAAGTAACATGCAGGATTAGG--GAGGGAAA--GATGATGGAA-AGTAG-- 109
consensus_7485#1 ACGACGCGTTAAGTAACATGCNGGATTNAGCGGAGGGCANCAGATGNTGGCNCNGTNAGT 281
********************* ***** * ***** * **** *** **
consensus_7485#0 TTACTTAAA-AAATGAAACCAAGTCG-TACA--CTCGAACTCGAA--CGAG-AAGAAGGG 524
consensus_7485#2 TTACTTAAA-AAATGAAACCAAGTCG-TACA--CTCGAACTCGAA--CGAG-AAGAAGGG 162
consensus_7485#1 NTACTTACACAAATGACCCCAAGTCGCTACCACCTCGAACTCGANAACGAGGAAGAAGGG 341
****** * ****** ******** *** *********** **** ********
consensus_7485#0 GCAGGGG-AGGAGATAC-----TTATACAGATA-TTCTTAGT-----------ATTTAAC 566
consensus_7485#2 GCAGGGGGAGGAGATAC-----TTATACAGATA-TTCTTAGT-----------ATTTAAC 205
consensus_7485#1 GCCAGGGCGAGGGNCGCATACCTTATACAGATAATTCTTAGTCATCTTAACCAATTTCAC 401
** *** * * * *********** ******** **** **
consensus_7485#0 AATTAAACAA-GCAAAAAACAGCA---ACAAAAAC-AGTTCAA-ATTAC--GGACAGCGA 618
consensus_7485#2 AATTAAACAA-GCAAAAAACAGCA---ACAAAAAC-AGTTCAA-ATTAC--GGACAGCGA 257
consensus_7485#1 AACAAAGCCACACAACAACCAGCACACACAAAAACCAGTTCAACATTAACGGAACAGCGA 461
** ** * * *** ** ***** ******** ******* **** * *******
consensus_7485#0 TCCA---TTTTCCAACGCGACGTGTGTGTTATCTTTTCAGCG--TTTGACTTTGT---TT 670
consensus_7485#2 TCCA---TTTTCCAACGCGACGTGTGTGTATCTCTCTCAGCCGTCTTGACTTTGTATACT 314
consensus_7485#1 TCCCAATTTTTCCCNANCAGCGCACCGGCTGGTNGTAGTAAAAATCTTATCATCT---NC 518
*** ****** * ** * * * * *
consensus_7485#0 TACACTGCTTTTTTGCAT-TGTGTTTTTAC--------TTTGGTGTCTG-ATGTT-TGAG 719
consensus_7485#2 TACACTGCTTNNCTANGC-ATTGCTGCTACANAACCTCTNGGCTGTCTGCATGTNCNGAG 373
consensus_7485#1 AACGCCGGTATCATGGACCTTTATTGGTTCTTTACCAACCTGCTATATCATCGCACTA-- 576
** * * * * * * * * * * * * *
consensus_7485#0 TT-TGATTACAATATACCAGAT-GTTTGGAA----TTGGAAA-ATAACCACAAAGCGATG 772
consensus_7485#2 TNATGATTACAATATACCAGAT-GTCNCNGGACACTCGGAAA-ATAACCACAAAGCGATG 431
consensus_7485#1 TTGTGCGTACAANTCACCTCATCANNGGTCGNTCCTCGCANTTGTAACTAGGACGGTATC 636
* ** ***** *** ** * * * **** * * * **
consensus_7485#0 TAGT-AAAACAAT-GGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACA--GT 828
consensus_7485#2 TAGTCAAAACAATTGGTTTTAAAATACTTNCGAAGATCTCCTCTTTCACAANCACACAGT 491
consensus_7485#1 NAGC-ATTATACC-ANACTAATAGCCCCACTANACTTGGTTTTGGGNGCAAACGTN-AGG 693
** * * * * * * * * * * ** * *
consensus_7485#0 CAACGCGTAATTGCATCACATCATTTT--AACGATGATCAGGCCCCATTTGGTTGCGTTT 886
consensus_7485#2 CAACGCGTAATTGCATCACATCATTGNTANACGATGATCAGGCCCATTATGGTTGCGTAC 551
consensus_7485#1 CNACAAAANATTAAAGCCCCAACCCAACATACNAAGAACCNGACATTGGTTTCAAGGNTT 753
* ** *** * * * ** * ** * * * * *
consensus_7485#0 A-CTCGAT-TACTCTCCATTAGATTGGGCCAC-AATGGGAATAAATT-ATATAGAAGAAA 942
consensus_7485#2 AACTCGACATACTCTCCATNAGCATGGGCCACCAATGGGANTAAATTCATATNGAAGAAA 611
consensus_7485#1 TACAACAAAAAACCACCA-CAGTGGGGGGCGTTGTTGTTACCAACAC-ACANTCAACACC 811
* * * * *** ** *** * ** * ** * * ** *
consensus_7485#0 AAGAAAAGAAAT-ACAATAACTGTAGCATAAACAATAGATCCATAAT---ACACACACAC 998
consensus_7485#2 AAGAAAAGAAAT-ACAATAACTGTAGCATAAACAATAGATCCATAAT---ACACANACAC 667
consensus_7485#1 TTNTTTTGATNTCACGGGAATTACCTTACCGCCTACCCTTTTATGAGCAAACATGACCAC 871
** * ** ** * * * * * ** * *** ***
consensus_7485#0 ACACTACCAG----TGAG-ATAGAGCGAAAGACCGTCGAGCGTCAGACA------GCCAC 1047
consensus_7485#2 ACACTACCAGG---TGAGCATANAGCGAANGACCG-CGAGCGTCAGACA------GCCAC 717
consensus_7485#1 GCNCCANCNAGGTACCAAAACGCNGCAACGGGTTTAAAAGTTCTGGGCCCGCTTTACCAC 931
* * * * * * ** * * ** * * ****
consensus_7485#0 AGCAAC--AGCAGCAGAAACATGAAAATTTCAAATATCAAATTTTCTTAATAAAACATAT 1105
consensus_7485#2 AGCANA--G--------------------------------------------------- 724
consensus_7485#1 ACCACCTTGCCNATTCTTTTGCAAAGAACGGCAGCATTGNCAATTTCCCNANGGGCCCCC 991
* **
consensus_7485#0 TCTTTTGTGATATGT----------- 1120
consensus_7485#2 --------------------------
consensus_7485#1 CCCCATTTAGGGGGGTCTGACGGNTN 1017
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||