These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1283 fasta sequence [CCGGGCCAAGATATTTATAAACAAGCAAACGGTTGAATGAAGGTAAAGGTACGACGGACCGTCAAGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCTATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCGAAAGGCAGCAAAAATACTCACCGCGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAATTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAGTGCAAGTAAACAACCCGTTAATCCAGAATGAAAAGGAAATGCAATACTGTAAGATGCATACAATGCAGGTGAGAGAGGGAGAGAGAAAGCGTTAGTTATGTTGTTGTTAACACCGTTTGTTGTGCAAGCAGTTTGTTTGAATTGTGAAACTTTGAATTTGAACTAATTGTGTAACACCATCGCGACACGCGTGTTCACTGTTT-GATCGCTCTGTAAGTAGTGCAATAATTTGAAACGTAAGACAAACTAAAACAAATGAAAACTATTCTACTAGCAACC-TTTTTGAAACACTCACGCAGTAGTAACAATCGTGTGTTTCCTTTTTTCAAACTAGAG-AGTAAGACTTCTTTCGGTAGTGATTAATCGTT-AGTTACACACGTGTTACAGCTACTACGAGTGACAGCTAGTTCTTTCGTGTTAGGATGTACTTTGTATAACAACTCCATTTTCTTATACCGTTCTAAGTGTTTTGTGCCGAGT-TGGGTTGATGTTCAACTAAAACCATCCCTCG-TTTACCCAGACAGACAGATAAGAACAGTAGTTAACATGTACCCGAACATTGATCGTACAATTAAAGTCAATCGACCGACCAACCAA-CAA-CAA-CAATCATAACAATATG-AT-AG-AACAGAACATAGTGTGCAAACAAGCGCCTGCCTCTAACAATCAACGCA--TTTGTAGATGAA-TTAAGCCCGTACNGA-TCCGAAGCAATGCAAA---ACTGAAGGAATGA-TTAGCAGAGGGGACATCCGCGATGCTGCAACCAGGGCAAGCTAAACACGCGCACGCACCCTACTCTGGTCCTCCACATCGTGGTCATTTGATGGCAGCTGGAGAGGGAACGTGGCAGAAAGATACGTAGAAGAACCTTTTGTAACCTTCAAACGAAAGTGTATAGAACTATAACTATATATATTAACAAGTGCCTATTTATTGTTGTAATACTGACGCAACACACATTTGCATTCTATGTTCTCTTTTTCTACCAATTGTTTTTATTTCCTTTTTTC] [+] EMBL BM611895 [CCGGGCCAAGATATTTATAAACAAGCAAACGGTTGAATGAAGGTAAAGGTACGACGGACCGTCACGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCTATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCGAAAGGCAGCAAAAATACTCACCGCGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAATTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAGTGCAAGTAAACAACCCGTTAATCCAGAATGAAAAGGAAATGCAATACTGTAAGATGCATACAATGCAGGTGAGAGAGGGAGAGAGAAAGCGTTAGTTATGTTGTTGTTAACACCGTTTGTTGTGCAAGCAGTTTGTTTGAATTGTGAAACTTTGAATTTGAACTAATTGTGTAACACCATCGCGACACGTGTGTTCACTGTTT GATCGCTCTGTAAGTAGTGCAATAATTTGAAACGTAAGACAAACTAAAACAAATGAAAACTATTCTACTAGCAACC TTTTTAAAACACTCACGCAGTAGTAACAATCGTGTGTTTCCTTTTTTCAAACTAGAG AGTAAGACTTCTTTCGGTAGTGATTAATCGTT AGTTACAC ] [+] EMBL BX622577 [ TATTTATAAACAAGCAAACGGTTGAATGAAGGTACAGGCACGACGGACCGTCAAGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCTATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCGAAAGGCAGCAAAAATACTCACCGCGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAATTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAGTGCAAGTAAACAACCCGTTAATCCAGAATGAAAAGGAAATGCAATACTGTAAGATGCATACAATGCAGGTGAGAGAGGGAGAGAGAAAGCGTTAGTTATGTTGTTGTTAACACCGTTTGTTGTGCAAGCAGTTTGTTTGAATTGTGAAACTTTGAATTTGAACTAATTGTGTAACACCATCGCGACACGCGTGTTCACTGTTT GATCGCTCTGTAAGTAGTGCAATAATTTGAAACGTAAGACAAACTAAAACAAATGAAAACTATTCTACTAGCAACC TTTTTGAAACACTCACGCAGTAGTAACAATCGTGTGTTTCCTTTTTTCAAACTAGAG AGTAAGACTTCTTTCGGTAGTGATTAATCGTT AGTTACACACGTGTTACAGCTACTACGAGTGACAGCTAGTTCTTTCGTGTTANGATGTACTTTGTATAACAACTCCATTTTCTTATACCGTTCTAAGTGTTTTGTGCCGAGT TGGGTTGATGNTCAACTAAAACCATCCCTCG TTTACCCAGACAGACAGATAAGAACAGTAGTTAACATGTACCCGAA ATT ] [+] EMBL BX628145 [ CCGTCAAGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCTATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCGAAAGGCAGCAAAAATACTCACCGCGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAATTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAGTGCAAGTAAACAACCCGTTAATCCAGAATGAAAAGGAAATGCAATACTGTAAGATGCATACAATGCAGGTGAGAGAGGGAGAGAGAAAGCGTTAGTTATGTTGTTGTTAACACCGTTTGTTGTGCAAGCAGTTTGTTTGAATTGTGAAACTTTGAATTTGAACTAATTGTGTAACACCATCGCGACACGCGTGTTCACTGTTT GATCGCTCTGTAAGTAGNGCAATAATTTGAAACGTAAGACAAACTAAAACAAATGAAAACTATTCTACTAGCAACC TTTTTGAAACACTCACGCAGTAGTAACAATCGTGTGTTTCCTTTTTTCAAACTAGAG AGTAAGAC ] [+] EMBL BX628255 [ GTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCTATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCGAAAGGCAGCAAAAATACTCACCGCGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAATTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAGTGCAAGTAAACAACCCGTTAATCCAGAATGAAAAGGAAATGCAATACTGTAAGATGCATACAATGCAGGTGAGAGAGGGAGAGAGAAAGCGTTAGTTATGTTGTTGTTAACACCGTTTGTTGTGCAAGCAGTTTGTTTGAATTGTGAAACTTTGAATTTGAACTAATTGTGTAACACCATCGCGACACGCGTGTTCACTGTTT GATCGCTCTGTAAGTAGTGCAATAATTTGAAACGTAAGACAAACTAAAACAAATGAAAACTATTCTACTAGCAACC TTTTTGAAACACTCACGCAGTAGTAACAATCGTGTGTTTCCTTTTTTCAAACTAGAG AGTAAGACTTCTTTCGGTAGTGATTAATCGTT AGTTACACACGTGTTACAGCTACTACGAGTG ] [+] EMBL AL931984 [ TTGTGCAAGCAGTTTGTTTGAATTGTGAAACTTTGAATTTGAACTAATTGTGTAACACCATCGCGACACGCGTGTTCACTGTTTGGATCGCTCTGTAAGTAGTGCAATAATTTGAAACGTAAGACAAACTAAAACAAATGAAAACTATTCTACTAGCAACCTTTTTTGAAACACTCACGCAGTAGTAACAATCGTGTGTTTCCTTTTTTCAAACTAGAGCAGTAAGACTTCTTTCGGTAGTGATTAATCGTTCAGTTACACACGTGTTACAGCTACTACGAGTGACAGCTAGTTCTTTCGTGTNAGGATGTACTTTGTATAACAACTCCATTTTCTTATACCGTTCTAAGTGTTTCGTGCCGAGTNTGGGTTGATGTTCAACTAAAAGCATCCCTCGNTTTACCCAGACAGACAGATAAGAACAGTAGTTAACATGTACCCGAACATTGATCGTACAATTAAAGTCAATCGACCGACCAACCAA CAA CAA CAATCATAACAATATGCATCAGCAACAGAACATAGTGTGCAAACAAGCGCCTGCCTCTAACAATCAACGCA TTTGTAGATGAA TTAAGCCCGTACNGACTCCGAAGCAATGCAAACANACTGAAGGAATGACTTAGC ] [+] EMBL BX614902 [ CTTCTTTCGGTAGTGATTAATCGTT AGTTACACACGTGTTACAGCTACTACGAGTGACAGCTAGTTCTTTCGTGTTAGGATGTACTTTGTATAACAACTCCATTTTCTTATACCGTTCTAAGTGTTTTGTGCCGAGT TGGGTTGATGTTCAACTAAAACCATCCCTCG TTTACCCAGACAGACAGATAAGAACAGTAGTTAACATGTACCCGAACATTGATCGTACAATTAAAGTCAATCGACCGACCAACCAACCAACCAACCAATCATAACAATATG AT AG AACAGAACATAGTGTGCAAACAAGCGCCTGCCTCTAACAATCAACGCATTTTTGTAGATGAATTTAAGCCCGTACTGA TCCGAAGCAATGCAAA AATGAAGGAATGA TTAGCAGAGGGGACATCCGCGATGCTGCAACCAGGGCAAGCTAAACACGCGCACGCACCCTACTCTGGTCCTCCACATCGTGGTCATTTGATGGCAGCTGGAGAGGGAACGTGGCAGAAAGATACGTAGAAGAACCTTTTGTAACCTTCAAACGAAAGTGTATAGAACTATAACTATATATATTAACAAGTGCCTATTTATTGTTGTAATACTGACGCAACACACATTTGCATTCTATGTTCTCTTTTTCTACCAATTGTTTTTATTTCCTTTTTTC] consensusID : consensus_7489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [AGGCAGATCGNCCACGAGNGNAATTGTTAAAAGAAAGTGAAGAAACAGAAGGACAACGAACCTACTCTTGGCAAAGGCTAAGATATTTATAAACAAGCAAACGGTTGAATGAAGGTACAGGCACGACGGACCGTCAAGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCTATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCCGAAAGGCAGCAAAAATACTCACCGGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAATTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAAGTGCAAGTAAAACAAACCCCGTTAAATCCAGAAATGAAACAGCGCACACATGNCAATTACTTGTCACACGATTGCCATTACCAATTGCCAGGTTGGAAGAGAGGGGAGCAGAGAAAGCGTTAGNTTCATTGTATGGTTAGTTAAACACCGGTATGTTAGTGGCAAAGGCAAGGTTAAGGTTGAAACTTTGGGT] [+] EMBL AL696710 [AGGCAGATCGNCCACGAGNGNAATTGTTAAAAGAAAGTGAAGAAACAGAAGGACAACGAACCTACTCTTGGCAAAGGCTAAGATATTTATAAACAAGCAAACGGTTGAATGAAGGTACAGGCACGACGGACCGTCAAGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCTATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCCGAAAGGCAGCAAAAATACTCACCGGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAATTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAAGTGCAAGTAAAACAAACCCCGTTAAATCCAGAAATGAAACAGCGCACACATGNCAATTACTTGTCACACGATTGCCATTACCAATTGCCAGGTTGGAAGAGAGGGGAGCAGAGAAAGCGTTAGNTTCATTGTATGGTTAGTTAAACACCGGTATGTTAGTGGCAAAGGCAAGGTTAAGGTTGAAACTTTGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7489#0 ------------------------------------------------------------ consensus_7489#1 AGGCAGATCGNCCACGAGNGNAATTGTTAAAAGAAAGTGAAGAAACAGAAGGACAACGAA 60 consensus_7489#0 ------------CCGGGCCAAGATATTTATAAACAAGCAAACGGTTGAATGAAGGTAAAG 48 consensus_7489#1 CCTACTCTTGGCAAAGGCTAAGATATTTATAAACAAGCAAACGGTTGAATGAAGGTACAG 120 *** ************************************** ** consensus_7489#0 GTACGACGGACCGTCAAGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCT 108 consensus_7489#1 GCACGACGGACCGTCAAGTGTTGATGCAGATGGATTTTTAAACAAACGAACCTCCTTCCT 180 * ********************************************************** consensus_7489#0 ATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGC-G 167 consensus_7489#1 ATAATAACAGAGCGTTACTACCTAAAATACTTAATGTTATAGAGCGCAAATAGTGTGCCG 240 ********************************************************** * consensus_7489#0 AAAGGCAGCAAAAATACTCACCGCGAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAA 227 consensus_7489#1 AAAGGCAGCAAAAATACTCACCG-GAGTGTGTGATTGTGAGTTATTAAATGTTGTGCTAA 299 *********************** ************************************ consensus_7489#0 TTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAA-GTGCAAGT 286 consensus_7489#1 TTTTACTAATTACTTACTGTAGAGCAAGCAGTAGAACGCTAGCAGTTACAAAGTGCAAGT 359 *************************************************** ******** consensus_7489#0 AAACAACCCGTTAATCCAGAATGAAAAGGAAATGCAATACTGTAAGATGCATACAATGCA 346 consensus_7489#1 AAAACA------AACCCCGTTAAATCCAGAAATGAAACAGCGCA---CACATGNCAATTA 410 *** * ** ** * * ****** ** * * * *** * * consensus_7489#0 GGTGAGAGAGGGAGAGAGAAAGCGTTAGTTATGTTGTTGTTAACACCGTTTGTTGTGCAA 406 consensus_7489#1 CTTGTCACACG---ATTGCCATTACCAATTGCCAGGTTGGAAGAGAGGGGAGCAGAGAAA 467 ** * * * * * * * ** **** * * * * * ** consensus_7489#0 GCAGTTTGTTTGAATTGTGAAACTTTGAATTTGAACTAATTGTGTAACACCATCGCGACA 466 consensus_7489#1 GC-GTTAGNTTCA-TTGTATGGTT----AGTTAAAC-ACCGGTATGTTA--GTGGCAA-A 517 ** *** * ** * **** * * ** *** * ** * * * ** * * consensus_7489#0 CGCGTGTTCACTGTTTGATCGCTCTGTAAGTAGTGCAATAATTTGAAACGTAAGACAAAC 526 consensus_7489#1 GGCAAGGTTAAGGTTGAAACTTTGGGT--------------------------------- 544 ** * * * *** * * * ** consensus_7489#0 TAAAACAAATGAAAACTATTCTACTAGCAACCTTTTTGAAACACTCACGCAGTAGTAACA 586 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 ATCGTGTGTTTCCTTTTTTCAAACTAGAGAGTAAGACTTCTTTCGGTAGTGATTAATCGT 646 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 TAGTTACACACGTGTTACAGCTACTACGAGTGACAGCTAGTTCTTTCGTGTTAGGATGTA 706 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 CTTTGTATAACAACTCCATTTTCTTATACCGTTCTAAGTGTTTTGTGCCGAGTTGGGTTG 766 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 ATGTTCAACTAAAACCATCCCTCGTTTACCCAGACAGACAGATAAGAACAGTAGTTAACA 826 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 TGTACCCGAACATTGATCGTACAATTAAAGTCAATCGACCGACCAACCAACAACAACAAT 886 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 CATAACAATATGATAGAACAGAACATAGTGTGCAAACAAGCGCCTGCCTCTAACAATCAA 946 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 CGCATTTGTAGATGAATTAAGCCCGTACNGATCCGAAGCAATGCAAAACTGAAGGAATGA 1006 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 TTAGCAGAGGGGACATCCGCGATGCTGCAACCAGGGCAAGCTAAACACGCGCACGCACCC 1066 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 TACTCTGGTCCTCCACATCGTGGTCATTTGATGGCAGCTGGAGAGGGAACGTGGCAGAAA 1126 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 GATACGTAGAAGAACCTTTTGTAACCTTCAAACGAAAGTGTATAGAACTATAACTATATA 1186 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 TATTAACAAGTGCCTATTTATTGTTGTAATACTGACGCAACACACATTTGCATTCTATGT 1246 consensus_7489#1 ------------------------------------------------------------ consensus_7489#0 TCTCTTTTTCTACCAATTGTTTTTATTTCCTTTTTTC 1283 consensus_7489#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||