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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1088 fasta sequence
[CCGCCCACGCGTCCGACAAAACGATGAAGAGTTCCTTTTGTCTATTAAGCTACTATATTTTATAGACAAAGACGTGTGTATGGATGTATGGTCATATTTCATCTTACGATTGATTAACAGCAGCCTGCATAATGTTTAGAGCAGCAGCTAGACACAAAACGAAGAAGAAATGAAGTAATTACTTAAGGTAATTACTATCAGAGATCAGAAATGTCGCTAGTAAGGTTTGAACAAAATGGCGCGTATACGCAATGTGCAATATTTGGTTCCGTTCATCCTGTTGTTTGTTTGCTTGTTTTTTTTTTTGTTAAATCCACACCAACATTTTCCTTTCCGCGACCTCCATTCTACCTACCTTCCTTTTCACGACCATTGTCTTCGAATAGTGTTTTTGTTGTGCGTTTGAAAAAAGATCGACAGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACAGCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGATTACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTCTAAAGGGCGGACATACTTTAGCATCGATCAACTTTAGCAGCGGATGTCGCACACACACATCACAATGCAAACATGCAGGTAGAATGTTCGAAAGAACGAAAGAACAGAGGAGGGCTAGGCGATCTGCGATCTAGGTGTAGGGCGCGTCTCTGCAATAACACTTCCATTGCAAACTGGGCTATATTTGGATCATTTTATTTTACTAGTACTAACATTTTTCTT]
[+] EMBL BM627358 [CCGCCCACGCGTCCGACAAAACGATGAAGAGTTCCTTTTGTCTATTAAGCTACTATATTTTATAGACAAAGACGTGTGTATGGATGTATGGTCATATTTCATCTTACGATTGATTAACAGCAGCCTGCATAATGTTTAGAGCAGCAGCTAGACACAAAACGAAGAAGAAATGAAGTAATTACTTAAGGTAATTACTATCAGAGATCAGAAATGTCGCTAGTAAGGTTTGAACAAAATGGCGCGTATACGCAATGTGCAATATTTGGTTCCGTTCATCCTGTTGTTTGTTTGCTTGTTTTTTTTTTTGTTAAATCCACACCAACATTTTCCTTTCCGCGACCTCCATTCTACCTACCTTCCTTTTCACGACCATTGTCTTCGAATAGTGTTTTTGTTGTGCGTTTGAAAAAAGATCGACAGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACAGCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGATTACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGG ]
[+] EMBL BM633946 [ ccgGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACAGCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGATTACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTCTAAAGGGCGGACATACTTTAGCATCGATCAACTTTAGCAGCGGATGTCGCACACACACATCACAATGCAAACATGCAGGTAGAATGTTCGAAAGAACGAAAGAACAGAGGAGGGCTAGGCGATCTGCGATCTAGGTGTAGGGCGCGTCTCTGCAATAACACTTCCATTGCAAACTGGGCTATATTTGGATCATTTTATTTTACTAGTACTAACATTTTTCTT]
consensusID : consensus_7492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 849 fasta sequence
[CCGCCCACGCGTCCGAGGGTACGGTCGGTGCACTTCACATTCTCGCCAAGGAGGAGTATAACCGACAGGTCATCCGCTCGCAGAACGTTATTCCGATCTTCGTCCAGTTGCTGTTCTACAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGG-CCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACACCAGGTTGCCGCCTGGTACGATACCGATCTTTAANGGCGGACATTCTTTACATCGAT]
[+] EMBL BM585285 [CCGCCCACGCGTCCGAGGGTACGGTCGGTGCACTTCACATTCTCGCCAAGGAGGAGTATAACCGACAGGTCATCCGCTCGCAGAACGTTATTCCGATCTTCGTCCAGTTGCTGTTCTACAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT ]
[+] EMBL BX620784 [ TATTCCGATCTTCGTCCAGTTGCTGTTCTACAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGG CCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACACCAGGTTGCCGCCTGGTACGATACCGATCTTTAANGGCGGACATTCTTTACATCGAT]
[+] EMBL AGA280532 [ TTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGA ]
[-] EMBL AGA282233 [ GCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGG CCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTC ]
consensusID : consensus_7492#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[AGATCGCCNCGAGGTTNGACAGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTTTAAAGGGCGGACATTCTTTAGCATCGATCAACTTTAGCAGCG]
[+] EMBL AL932595 [AGATCGCCNCGAGGTTNGACAGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTTTAAAGGGCGGACATTCTTTAGCATCGATCAACTTTAGCAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7492#1 CCGCCCACGCGTCCGAGGGTACGGTCGGTGCACTTCACATTCTCGCCAAGGAGGAGTATA 60
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 CCGCCCACGCGTCCGACAAAACGAT-GAAGAGTTCCTTTTGTCTATTAAGCT--ACTATA 57
consensus_7492#1 ACCGACAGGTCATC-CGCTCGCA-GAACGTTATTCCGATCTTCGTCCAGTTGCTGTTCTA 118
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 TTTTATAGACAAAGACGTGTGTATGGATGTATGGTCATATTTCATCTTACGATTGATTAA 117
consensus_7492#1 CAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGA 178
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 CAGCAGCCTGCATAATGTTTAGAGCA--GCAGCTAG-ACACAAAACGAAGAAGAAAT--- 171
consensus_7492#1 CAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTT-GC 237
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 GAAGTAATTACTTAAGGTAATT-ACTATCAGAGATCAGAAATGTCGCTAGTAAGGTTTGA 230
consensus_7492#1 TCAACTCGGCAAATGAAGGTGTCGCCACATAC---GCCGCAGCCGTACTGTTCAAGATGA 294
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 ACAAAATGGCGCGTATACGCAATGTGCAATATTTGGTTCCGTTCATCCTGTTGTTTGTTT 290
consensus_7492#1 GCGAGGACAAGTC---GATGGATTACAAGAAGCGCTTCTC---CAGCGAGCTGA---CCA 345
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 GCTTGTTTTTTTTTTTGTTAAATCCACACCAACATTTTCCTTTCCGCGACCTCCATTCTA 350
consensus_7492#1 CCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACG--------GCGAACTCGGTAT 397
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 CCTACCTTCCTTTTCACGACCATTGTCT-TCGAATAGTGTTTTTGTTGTGCGTTTGAAAA 409
consensus_7492#1 TGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCA---------GGCATACGAAGGTCT 448
consensus_7492#2 ---------------------------------------------------AGATCGCCN 9
consensus_7492#0 AAGATCGA--CAGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACA 467
** * *
consensus_7492#1 ATACGGACAA-GGGCCGGCGAGCGTA-------CACAGCTCGCACGGT---GGCCGTGCG 497
consensus_7492#2 CGAGGTTNGACAGGCCGGCGAGCGTA-------CACAGCTCGCACGGT---GGCCGTGCG 59
consensus_7492#0 GCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGAT 527
* * ** ** ******** * * ***
consensus_7492#1 TTCCAGCAA------------GGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTG 545
consensus_7492#2 TTCCAGCAA------------GGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTG 107
consensus_7492#0 TACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTG 587
* * * ** ***************************************
consensus_7492#1 GAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGC 605
consensus_7492#2 GAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGC 167
consensus_7492#0 GAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGC 647
**************************************** *******************
consensus_7492#1 GGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT 665
consensus_7492#2 GGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT 227
consensus_7492#0 GGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT 707
************************************************************
consensus_7492#1 AGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGC 725
consensus_7492#2 AGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGC 287
consensus_7492#0 AGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGC 767
************************************************************
consensus_7492#1 GAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAG 785
consensus_7492#2 GAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAG 347
consensus_7492#0 GAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAG 827
************************************************************
consensus_7492#1 GACAACA-CCAGGTTGCCGCCTGGTACGATACCGATCTTTAANGG-CGGACATTCTTTA- 842
consensus_7492#2 GACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTTTAAAGGGCGGACATTCTTTAG 407
consensus_7492#0 GACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTCTAAAGGGCGGACATACTTTAG 887
******* ****************************** *** ** ******* *****
consensus_7492#1 CATCGAT----------------------------------------------------- 849
consensus_7492#2 CATCGATCAACTTTAGCAGCG--------------------------------------- 428
consensus_7492#0 CATCGATCAACTTTAGCAGCGGATGTCGCACACACACATCACAATGCAAACATGCAGGTA 947
*******
consensus_7492#1 ------------------------------------------------------------
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 GAATGTTCGAAAGAACGAAAGAACAGAGGAGGGCTAGGCGATCTGCGATCTAGGTGTAGG 1007
consensus_7492#1 ------------------------------------------------------------
consensus_7492#2 ------------------------------------------------------------
consensus_7492#0 GCGCGTCTCTGCAATAACACTTCCATTGCAAACTGGGCTATATTTGGATCATTTTATTTT 1067
consensus_7492#1 ---------------------
consensus_7492#2 ---------------------
consensus_7492#0 ACTAGTACTAACATTTTTCTT 1088
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||