cluster # 7497

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Anopheles gambiae
cluster # 7497 cluster # 7497 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7497#0 length = 832 sequences # 6

consensus_7497#1 length = 426 sequences # 1

consensusID : consensus_7497#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 832
fasta sequence

                              [CCGGTTTTACTCAGTTATTGTGCGTGTGTGTTCTGGCAGCGAGCGTCTTCTAATTCACCTTTTCCATCGCTACACATCGCAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCATCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAGCATTCCCATGTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAGGCGGTAAAGGACGCGATTGACGTCGGCTATCGACACATTGACTGTGCCCACGTCTACCAGAACGAGCATGAGGTGGGCGAAGGAATTGCGGCCAAAATTGCCGAAGGTGTTGTGAAGAGAGAGGATCTCTTTGTGACGAGCAAACTGTGGAACACGTTTCATCGGCCCGATCTGGTCGAGGGTGCTTGTAAGACAACGCTGCAGAACCTTAAGCTGGACTATCTCGACCTCTACCTGATCCACTGGCCGGTAGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGGGACCGGATGGGAAGACGTTCCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGATGGAGAAGCTCGTTGATGCGGGTCTGGTGCGCAATATTGGAGTGTCGAATTTCAATGCCAAACAGGTGCAGCGTGTGCTGGACGTTGCACGCATCCCACCCGCCACCAACCAGATCGAGTGCCATCCTTATCTGCACCAGTCGAAAATTACTTCATTCTGTGCGGAGAAGGGCATCATCGTTACCGCGTACAGTCCGCTCGGTTCGCCGGCCCGACCCTGGGTTAAGGCGGACGATCCGGTGCTGATGGAC]

[+] EMBL BM656745             [CCGGTTTTACTCAGTTATTGTGCGTGTGTGTTCTGGCAGCGAGCGTCTTCTAATTCACCTTTTCCATCGCTCCACATCGCAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCATCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAGTATTCCCATGTTTGGCTTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAAGCGGTAAAGGACGCGATTGACGTCGGCTATCGACACATCGACTGTGCCCACGTCTACCAGAACGAGCATGAGGTGGGCGAAGGAATTGCGGCCAAAATTGCCGAAGGTGTTGTGAAGAGAGAGGATCTCTTTGTGACGAGCAAACTGTGGAACACGTTTCATCGGCCCGATCTGGTCGAGGGTGCTTGTAAGACAACGCTGCAGAACCTTAAGCTGGACTATCTCGACCTCTACCTGATCCACTGGCCGGTGGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGGGACCGGATGGGAAGACGTTCCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGATGGAGAAGCTCGTT                                                                                                                                                                                                                                             ]
[+] EMBL BX607014             [  tGTTTTACTCAGTTATTGTGCGTGTGTGTTCTGGCAGCGAGCGTCTTCTAATTCACCTTTTCCATCGCTACACATCACAGTAGGCAGTCTTTATTTTGCAAGCTCTCAACGCTTATCATCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAGCATTCCCATGTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAGGCGGTAAAGGACGCGATTGACGTCGGCTATCGACACATTGACTGTGCCCACGTCTACCAGAACGAGCATGAGGTGGGCGAAGGAATTGCGGCCAAAATTGCCGAAGGTGTTGTGAAGAGAGAGGATCTCTTTGTGACGAGCAAACTGTGGAACACGTTTCATCGGCCCGATCTGGTCGAGGGTGCTTGTAAGACAACGCTGCAGAACCTTAAGCTGGACTATCTCGACCTCTACCTGATCCACTGGCCGGTAGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGGGACCGGATGGGAAGACGTTCCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGATGGAGAAGCTCGTTGATGCGGGTCTGGTGCGCAATATTGGAGTGTCGAATTTCAATGCCAAACAGGTGCAGCGTGTGCTGGACGTTGCACGCATCCCACCCGCCACCAACCAGATCGAGTGCCAT                                                                                                                              ]
[+] EMBL BM578832             [                                                                     ccgCACATCGCAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCATCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAGTATTCCCATGTTTGGCTTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAAGCGGTAAAGGACGCGATTGACGTCGGCTATCGACACATCGACTGTGCCCACGTCTACCAGAACGAGCATGAGGTGGGCGAAGGAATTGCGGCCAAAATTGCCGAAGGTGTTGTGAAGAGAGAGGATCTCTTTGTGACGAGCAAACTGTGGAACACGTTTCATCGGCCCGATCTGGTCGAGGGTGCTTGTAAGACAACGCTGCAGAACCTTAAGCTGGACTATCTCGACCTCTACCTGATCCACTGGCCGGTGGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGGGACCGGATGGGAAGACGTTCCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGATGGAGAAGCTCGTTGATGCTGGTCTGGTGCGCAACATTGGAGTGTCGAATTTCAATGCCAAACAGGTGCAGCGTGTGCTGGACGTAGCACGCATCCCACCCGCCACCAACCAGATCGAATGCCATCCTTATCTGCACCAGTCGAAAATTACTTCATTCTGTGCGGAGAAGGGCATCATC                                                                        ]
[+] EMBL AGA281962            [                                                                                                                                 CAAAATGACTTGCAATGTCGTAGCGACCGCAATCTTCAAGAATGGAAACAGCATTCCCATGTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAGGCGGTAAAGGACGCGATTGACGTCGGCTATCGACACATTGACTGTGCCCACGTCTACCAGAACGAGCATGAGGTGGGCGAAGGAATTGCGGCCAAAATTGCCGAAGGTGTTGTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX608048             [                                                                                                                                          TTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAGCATTCCCATGTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAGGCGGTAAAGGACGCGATTGACGTCGGCTATCGACACATTGACTGTGCCCACGTCTACCAGAACGAGCATGAGGTGGGCGAAGGAATTGCGGCCAAAATTGCCGAAGGTGTTGTGAAGAGAGAGGATCTCTTTGTGACGAGCAAACTGTGGAACACGTTTCATCGGCCCGATCTGGTCGAGGGTGCTTGTAAGACAACGCTGCAGAACCTTAAGCTGGACTATCTCGACCTCTACCTGATCCACTGGCCGGTAGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGGGACCGGATGGGAAGACGTTCCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGATGGAGAAGCTCGTTGATGCGGGTCTGGTGCGCAATATTGGAGTGTCGAATTTCAATGCCAAACAGGTGCAGCGTGTGCTGGACGTTGCAC                                                                                                                                                                 ]
[+] EMBL AGA285299            [                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACCTTAAGCTGGACTATCTCGACCTCTACCTGATCCACTGGCCGGTAGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGGGACCGGATGGGAAGACGTTCCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGATGGAGAAGCTCGTTGATGCGGGTCTGGTGCGCAATATTGGAGTGTCGAATTTCAATGCCAAACAGGTGCAGCGTGTGCTGGACGTTGCACGCATCCCACCCGCCACCAACCAGATCGAGTGCCATCCTTATCTGCACCAGTCGAAAATTACTTCATTCTGTGCAGAGAAGGGCATCATCGTTACCGCGTACAGTCCGCTCGGTTCGCCGGCCCGACCCTGGGTTAAGGCGGACGATCCGGTGCTGATGGAC]




>consensus_7497#0
CCGGTTTTACTCAGTTATTGTGCGTGTGTGTTCTGGCAGCGAGCGTCTTCTAATTCACCT
TTTCCATCGCTACACATCGCAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCA
TCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAG
CATTCCCATGTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAGGCGGT
AAAGGACGCGATTGACGTCGGCTATCGACACATTGACTGTGCCCACGTCTACCAGAACGA
GCATGAGGTGGGCGAAGGAATTGCGGCCAAAATTGCCGAAGGTGTTGTGAAGAGAGAGGA
TCTCTTTGTGACGAGCAAACTGTGGAACACGTTTCATCGGCCCGATCTGGTCGAGGGTGC
TTGTAAGACAACGCTGCAGAACCTTAAGCTGGACTATCTCGACCTCTACCTGATCCACTG
GCCGGTAGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGGGACCGGATGGGAAGACGTT
CCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGATGGAGAAGCTCGTTGATGC
GGGTCTGGTGCGCAATATTGGAGTGTCGAATTTCAATGCCAAACAGGTGCAGCGTGTGCT
GGACGTTGCACGCATCCCACCCGCCACCAACCAGATCGAGTGCCATCCTTATCTGCACCA
GTCGAAAATTACTTCATTCTGTGCGGAGAAGGGCATCATCGTTACCGCGTACAGTCCGCT
CGGTTCGCCGGCCCGACCCTGGGTTAAGGCGGACGATCCGGTGCTGATGGAC

consensusID : consensus_7497#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [GCAGAATCGCCCGAGGTTCTACACATCACAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCATCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAGCATTCCCATGTTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTAGCGCAGGCGGTAAAGGACGCGATTGACGTCGGCTATCGGGACATATGACTTGTGGCCACGGTCTAACAGAAATGAGCATTGAGNGTGNGCTGAAGGGAATTTGNGGGGGCCAAAATATTGTGCTCGAAAGTGTTTGTGAAGAGAGAGGGATCTCTTGTGAAGAGCAAACTGTTGGAGAACANCGTTTNATNGGGCCCGATCATAGGTTCGAAGGGTTGCGTATTGGTTAAAGAAAGAAAGCATTGNT]

[+] EMBL AL930009             [GCAGAATCGCCCGAGGTTCTACACATCACAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCATCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAGCATTCCCATGTTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTAGCGCAGGCGGTAAAGGACGCGATTGACGTCGGCTATCGGGACATATGACTTGTGGCCACGGTCTAACAGAAATGAGCATTGAGNGTGNGCTGAAGGGAATTTGNGGGGGCCAAAATATTGTGCTCGAAAGTGTTTGTGAAGAGAGAGGGATCTCTTGTGAAGAGCAAACTGTTGGAGAACANCGTTTNATNGGGCCCGATCATAGGTTCGAAGGGTTGCGTATTGGTTAAAGAAAGAAAGCATTGNT]




>consensus_7497#1
GCAGAATCGCCCGAGGTTCTACACATCACAGTAGGCAGTCTGTATTTTGCAAGCTCTCAA
CGCTTATCATCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAA
TGGTAACAGCATTCCCATGTTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTAG
CGCAGGCGGTAAAGGACGCGATTGACGTCGGCTATCGGGACATATGACTTGTGGCCACGG
TCTAACAGAAATGAGCATTGAGNGTGNGCTGAAGGGAATTTGNGGGGGCCAAAATATTGT
GCTCGAAAGTGTTTGTGAAGAGAGAGGGATCTCTTGTGAAGAGCAAACTGTTGGAGAACA
NCGTTTNATNGGGCCCGATCATAGGTTCGAAGGGTTGCGTATTGGTTAAAGAAAGAAAGC
ATTGNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7497#0      CCGGTTTTACTCAGTTATTGTGCGTGTGTGTTCTGGCAGCGAGCGTCTTCTAATTCACCT 60
consensus_7497#1      ------------------------------------------------GCAGAATCGCCC 12
                                                                       *  * ** ** 

consensus_7497#0      TTTCCATCGCTACACATCGCAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCA 120
consensus_7497#1      GA---GGTTCTACACATCACAGTAGGCAGTCTGTATTTTGCAAGCTCTCAACGCTTATCA 69
                               ********* *****************************************

consensus_7497#0      TCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAG 180
consensus_7497#1      TCCCAAACGCAAAATGACTTGCAATGTCGTACCGAATGCAATCTTCAAGAATGGTAACAG 129
                      ************************************************************

consensus_7497#0      CATTCCCATGTTT-GGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTGGCGCAGGCGG 239
consensus_7497#1      CATTCCCATGTTTTGGACTGGGCACCTGGAACTCTCCCCCGGGACAGGTAGCGCAGGCGG 189
                      ************* *********************************** **********

consensus_7497#0      TAAAGGACGCGATTGACGTCGGCTATCGACACAT-TGACT-GTGCCCACG-TCTACCAGA 296
consensus_7497#1      TAAAGGACGCGATTGACGTCGGCTATCGGGACATATGACTTGTGGCCACGGTCTAACAGA 249
                      ****************************  **** ***** *** ***** **** ****

consensus_7497#0      A-CGAGCATGAGGTGGGCG----AAGGAATT----GCGGCCAAAAT----TGC-CGAAGG 342
consensus_7497#1      AATGAGCATTGAGNGTGNGCTGAAGGGAATTTGNGGGGGCCAAAATATTGTGCTCGAAAG 309
                      *  ******   * * * *    * ******    * *********    *** **** *

consensus_7497#0      TGTT-GTGAAGAGAGAGGATCTCTTTGTGACGAGCAAACTGTGGAACACGTTTCATCGGC 401
consensus_7497#1      TGTTTGTGAAGAGAGAGGGATCTCTTGTGAAGAGCAAACTGTTGGAGAACANCGTTTNAT 369
                      **** *************      ****** *********** * * *       *    

consensus_7497#0      CCGATCTGGTCGAGGGTGCTTGTAAGACAACGCTGCAGAACCTTAAGCTGGACTATCTCG 461
consensus_7497#1      NGGGCCCGATCATAGGT--TCGAAGGGTTGCGTATTGG---TTAAAGAAAGAAAGCATTG 424
                        *  * * **   ***  * * * *    **     *    * ***   **     * *

consensus_7497#0      ACCTCTACCTGATCCACTGGCCGGTAGGCTACCAGGAAGGTACGGAGCTCTTCCCGATGG 521
consensus_7497#1      NT---------------------------------------------------------- 426
                                                                                  

consensus_7497#0      GACCGGATGGGAAGACGTTCCTCTTTTCCGACGCCGATTACGTCGACACCTGGCCCGAGA 581
consensus_7497#1      ------------------------------------------------------------
                                                                                  

consensus_7497#0      TGGAGAAGCTCGTTGATGCGGGTCTGGTGCGCAATATTGGAGTGTCGAATTTCAATGCCA 641
consensus_7497#1      ------------------------------------------------------------
                                                                                  

consensus_7497#0      AACAGGTGCAGCGTGTGCTGGACGTTGCACGCATCCCACCCGCCACCAACCAGATCGAGT 701
consensus_7497#1      ------------------------------------------------------------
                                                                                  

consensus_7497#0      GCCATCCTTATCTGCACCAGTCGAAAATTACTTCATTCTGTGCGGAGAAGGGCATCATCG 761
consensus_7497#1      ------------------------------------------------------------
                                                                                  

consensus_7497#0      TTACCGCGTACAGTCCGCTCGGTTCGCCGGCCCGACCCTGGGTTAAGGCGGACGATCCGG 821
consensus_7497#1      ------------------------------------------------------------
                                                                                  

consensus_7497#0      TGCTGATGGAC 832
consensus_7497#1      -----------