These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 807 fasta sequence [CCGAGATCATCGCACACGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCTTGTTGCGTTGCCTACTTTGCACTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCACCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGGACCGTCCAGGGCTACATGAGGAAGTTTGGACAGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGGGAGGCTACAACTGCAAGAACACGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGGCAAACGAGTACAGTGCGGCACGTCAGTAAAG--CGTGGTCTTCTCTTTTTTTTTCTTATTTAATTTGCTAATTTTAATACACATCACGTAAGGCTCTCCTTCGCTTCTTTAAAGTCGAAATCTGAAAAAAGAGCATTGATTTGAAGAAAGATGTTTCACGTCAACAGTTTTATTCATTTTCTTTCGAAATACATAAAAGTAAA] [+] EMBL BM600380 [CCGAGATCATCGCACACGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCTTGTTGCGTTGCCTACTTTGCACTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCATTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCACCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGGACCGTCCAGGGCTACATGAGGAAGTTTGGACAGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGGGAGGCTACAACTGCAAGAACACGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGGCAAACGAGTACAGTGCGGCACGTCAGTAAAG CGTGGTCTTCTCTTTTTTTTTCTTATTTAATTTGCTAATTTTAATACACATCACGTAAGGATC ] [+] EMBL BX625637 [ ACACGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCTTGTTGCGTTGCCTACTTTGCACTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCATTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCACCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGGACCGTCCAGGGCTACATGAGGAAGTTTGGACAGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGGGAGGCTACAACTGCAAGAACACGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGGCAAACGAGTACAGTGCGGCACGTCAGTAAAG CGTGGTCTTCTCTTTTTTTTTCTTATTTAATTTGCTAATTTTAATACACATCACGTAAGGTTCTCCTTCGCTTCTTTAAAGTCGAAATCTGAAATAAGAGCATTGATTTGAANAAAGATGTTTCACGTCAACAGTTTTATTCATTTTCTTTCGAAATACATAAAA ] [+] EMBL BX621605 [ TGCGTTGCCTACTTTGCATTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCTCCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGAACCGTCCAGGGCTACATGAGGAAGTTTGGACAGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGGGAGGCTACAACTGCAAAAACGCGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGGCGATCGAGTACAGTGCGGCACGTCAGTAAAG CGTGGTCTTCTC TTTTTTTTCTTATTTAATTTGCTAATTTTAATACACATCACGTAAGGCTCTCCTTCGCTTCTTTAAAGTAGAAATCTGAAAAAAGAGCATTGATTTGAAGAAAGATGNTTCACGTCAACAGTTTTATACGTTTTCTTTC ] [+] EMBL BX613546 [ ACTGTAGTCGTCGTTGTTGTTTGATCATTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCACCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGGACCGTCCAGGGCTACATGAGGAAGTTTGGACAGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGGGAGGCTACAACTGCAAGAACACGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGGCGAACGAGTACAGTGCGGCTCGTCAGTAGAGTACGTGGTCGTCTC TGTTTGCTTATTTAATTTGCTAATTTTAATACACATCACGTAAGGCTCTCCTTCGCTTCTTTAAAGTCGAAATCTGAAAAAAGAGCATTGATTTGAAGAAAGATGTTTCACGTCAACAGTTTTATTCATTTTCTTTCGAAATACATAAAAGTAAA] [+] EMBL BX615727 [ TGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCACCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGGACCGTCCAGGGCTACATGAGGAAGTTTGGACAGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGGGAGGCTACAACTGCAAGAACACGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGG ] consensusID : consensus_7498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence [AATNGCCCGAGGNTACACCGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCTTGTTGCGTTGCCTACTTTGCATTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCTCCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGAACCGTCCAGGGCTACATGAGGAA-G-TTTGGACAGGACTGCA-A-TGGTGACGGTCGGATCGATTGCTTCG-ATCACGCGATCGTCCACAAGCTGGGAGGCTACA-A-CTGCAA-AAACGCGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGGCGA] [+] EMBL AL934948 [AATNGCCCGAGGNTACACCGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCTTGTTGCGTTGCCTACTTTGCATTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGCAGGGTGATTCTCCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGAACCGTCCAGGGCTACATGAGGAA G TTTGGACAGGACTGCA A TGGTGACGGTCGGATCGATTGCTTCG ATCACGCGATCGTCCACAAGCTGGGAGGCTACA A CTGCAA AAACGCGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCATCCAGCGAAAGGCGA] [+] EMBL AL692323 [ CCGAGG TTTACCGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCTTGTTGCGTTGCCTACTTTGCACTGTAGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGTGTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCGGTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGGATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTTCCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCGATGCCGGCAAGCCCGTCCAGTAGGGTGATTCACCCGACTCGCAGAATGCGTACGCGAACTGCGCCAATGAACCGTACTGTGCGGCCCGGACCGTCCAGCGCTACATGAGGAACGCTTTGGACAGGACTGCACACTGGTGACGGTCGGATCGATTGCTTCGCATCACGCGATCGTCCACAAGCTGGGAGGCTACANACCTGCAACGAACACGGTACCGATCGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7498#0 ------CCGAGATCATCGCACACGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCT 54 consensus_7498#1 AATNGCCCGAGGNTA---CAC-CGAAGCGGACGTCTTTATCCTTTCGAGAGCTTTGGGCT 56 ***** * *** ************************************** consensus_7498#0 TGTTGCGTTGCCTACTTTGCACTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGT 114 consensus_7498#1 TGTTGCGTTGCCTACTTTGCATTGTTGTCGTCGTTGTTGTTTGATCAGTTTGTCGCGTGT 116 ********************* ************************************** consensus_7498#0 GTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCG 174 consensus_7498#1 GTATAGAGCAAGCCAAAATGGTGCCAAAATCTTTGCTGCTCGTGTGCTTGATCGCGATCG 176 ************************************************************ consensus_7498#0 GTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGG 234 consensus_7498#1 GTGTTAGCAGCGTGCTGGCGGATGTTTCTCACATCGCCCCACCGCAACAACAGCTTGAGG 236 ************************************************************ consensus_7498#0 ATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTT 294 consensus_7498#1 ATCCGGTCACCGACGTGTGCCTGTCCTGCATCTGTGAGGCTTCGTCCGGTTGTGATGCTT 296 ************************************************************ consensus_7498#0 CCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCG 354 consensus_7498#1 CCCTGCGCTGCAGCGGTGACGTGTGCGGGATGTTCGCCATCACCTGGGCGTACTGGGCCG 356 ************************************************************ consensus_7498#0 ATGCCGGCAAGCCCGTCCAGCAGGGTGATTCACCCGACTCGCAGAATGCGTACGCGAACT 414 consensus_7498#1 ATGCCGGCAAGCCCGTCCAGCAGGGTGATTCTCCCGACTCGCAGAATGCGTACGCGAACT 416 ******************************* **************************** consensus_7498#0 GCGCCAATGAACCGTACTGTGCGGCCCGGACCGTCCAGGGCTACATGAGGAAGTTTGGAC 474 consensus_7498#1 GCGCCAATGAACCGTACTGTGCGGCCCGAACCGTCCAGGGCTACATGAGGAAGTTTGGAC 476 **************************** ******************************* consensus_7498#0 AGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGG 534 consensus_7498#1 AGGACTGCAATGGTGACGGTCGGATCGATTGCTTCGATCACGCGATCGTCCACAAGCTGG 536 ************************************************************ consensus_7498#0 GAGGCTACAACTGCAAGAACACGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCA 594 consensus_7498#1 GAGGCTACAACTGCAAAAACGCGGTACCGATCGTCTACCAGTCCAAGATCGACGAATGCA 596 **************** *** *************************************** consensus_7498#0 TCCAGCGAAAGGCAAACGAGTACAGTGCGGCACGTCAGTAAAGCGTGGTCTTCTCTTTTT 654 consensus_7498#1 TCCAGCGAAAGGCGA--------------------------------------------- 611 ************* * consensus_7498#0 TTTTCTTATTTAATTTGCTAATTTTAATACACATCACGTAAGGCTCTCCTTCGCTTCTTT 714 consensus_7498#1 ------------------------------------------------------------ consensus_7498#0 AAAGTCGAAATCTGAAAAAAGAGCATTGATTTGAAGAAAGATGTTTCACGTCAACAGTTT 774 consensus_7498#1 ------------------------------------------------------------ consensus_7498#0 TATTCATTTTCTTTCGAAATACATAAAAGTAAA 807 consensus_7498#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||