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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1708 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTCCGCCAATGGCTGGGCCCGAGCTGGACGATGACGACGACGACGAGCTGGACGATGGGGGTGGATCTGGACGATCCCAAGAGCAACCGGGGCATCGACAGTGGCTTCCTCGATCCGGTCGACAATGGGTCCGTTGATACGGGTGTGTCGCGGGCGGGACGACGCGGAGGTCGTCGCAATCAGGCACCTCCCGGGCCAACGTATCGCCCAGGGTTTGCACCGACATTCGATGCCGATGGGACACGTGTTGTTCAAACGACGGCCACCGGGCAGGTCATACCGGACGTGAATGTGTACCAGCAGAAGAAGAACCTTGCGCAGGGCATGATGGATCTGGCGCTACTGTCCGCCAACGCCAATCAGCTCCGGTACGTGCTGGAGTCGTACAGCCGCCATCCGTACTTCTACGTCAATCTGGTGTTCATCTCGACCAGCATCATTGCGCAGGTGGCGGTCGGCATTGGGCTGATCTGGAAGAGCCGGTACGACATCAAGAAGGAGAACGATTTTTGTAAAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTCATCATTACGCTCGTGAACGTGCTGATATCGGCGTTTGGTGTTGCCGAGACGCAGCCGGTCGTGTGACGGCACTGTGCTGTTACTGTGCTGTGTAATTTAAACTATGTTGTCAGTATCATCTAGAGTAGCATTTAGGTTAGGATGTGATAGGAGCAAATAGTGGAGTTTCGACGACTTCAAATCCAAATAACTTAACCATGGTCCATAGATTGTTTTAATCCAAAATAAATGATGTATTTTATGAACCTTTTTAGTGAAGAGCTACTACTGTAAATTGATTATCAGTAGTGTTACTAACGATAAGCATTTTCGTGAACACTACCACAAAAACAAAAAGAAATTAACACTCCTAATATATCATTCATACACTGCGTGTGTTCGTTGACCTTACAGTTCGTGTTTGCACCCACAACAAACCACTGCGGGCGTTTCAGATGTAAAGAGAGAAGAACAATTGATCAAACAGCTGTATAAACAATAAAGTTAAAAATGATCAAAACATTCCTCAGTA]
[+] EMBL BM656851 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTG GTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATC AAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGT ]
[+] EMBL BM599246 [ CCGCCCACGCGTCCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCA ]
[+] EMBL BM625091 [ CCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTGAACCGCCAATGGCTGGGCCCGAGCTGGACGATGACGACGACGACGAGCTGGACGATGGGGGTGGATCTGGACGATCCCAAGAGCAACCGGGGCAT ]
[+] EMBL BX618652 [ GCTGGGCCCGAGCTGGACGAT GACGACGACGAGCTGGACGAT GGGGTGGATCTGGACGACCCCAAGAGCAACCGGGGCATCGACAGTGGCTTCCTCGATCCGGTCGACAATGGGTCCGTTGATACGGGTGTGTCGCGGGCGGGACGACGCGGAGGTCGTCGCAATCAGGCACCTCCCGGGCCAACGTATCGCCCAGGGTTTGCACCGACATTCGATGCCGATGGGACACGTGTTGTTCAAACGACGGCCACCGGGCAGGTCATACCGGACGTGAATGTGTACCAGCAGAAGAAGAACCTTGCGCAGGGCATGATGGATCTGGCGCTACTGTCCGCCAACGCCAATCAGCTCCGGTACGTGCTGGAGTCGTACAGCCGCCATCCGTACTTCTACGTCAATCTGGTGTTCATCTCGACCAGCATCATTGCGCAGGTGGCGGTCGGCATTGGGCTGATCTGGAAGAGCCGGTACGACATCAAGAAGGAGAACGATTTTTGTAAAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTCATCATTACGCTCGTGAACGTGCTGATATCGGCGTTTGGTG ]
[-] EMBL BM632372 [ AAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTTATCATTACGCTCGTGAACGTGCTAATATCGGCGTTTGGTGTTGCCGAGACGCAGCCGGTCGTGTGACGGCACTGTGCTGTTACTGTGCTGTGTAATTTAAACTATGTTGTCAGTATCATCTAGAGTAGCATTTAGGTTAGGATGTGATAGGAGCAAATAGTGGAGTTTCGACGACTTCAAATCCAAATAACTTAACCATGGTCCATAGATTGTTTTAATCCAAAATAAATGATGTATTTTATGAACCTTTTTAGTGAAGAGCTACTACTGTAAATTGATTATCAGTAGTGTTACTAACGATAAGCATTTTCGTGAACACTACCACAAAAACAAAAAGAAATTAACACTCCTAATATATCATTCATACACTGCGTGTGTTCGTTGACCTTACAGTTCGTGTTTGCACCCACAACAAACCACTGCGGGCGTTTCAGATGTAAAGAGAGAAGAACAATTGATCAAACAGCTGTATAAACAATAAAGTTAAAAATGATCAAAACATTCCTCAGTA]
consensusID : consensus_7500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[CCGGTCGAGCCGCTCAGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCATCTCGCCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATACCTAACGAATCGAATCTTCCTCGGCA]
[+] EMBL BM607915 [CCGGTCGAGCCGCTCAGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCATCTCGCCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATACCTAACGAATCGAATCTTCCT ]
[+] EMBL BM599333 [ CCGCCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTC GAGTCGAAAAACGGGCAACGGCTTATTGTTTCGACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTGGCACAAACGGTGTGTTGTTGGAACCCCTTCCCCGTGGGGTGTGTG TGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTATTTTTGTTGTGACGGTACATTATCGGTAGCATTAAAGTCGAATCAGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGAACAAGTGTTCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGTCGGCAGCGACATGCCAGATGCTGGCCGCGCCACTGCCAACCCAGCGCACGCCCTTACCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCATCTCGCCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATACCTAACGAATCGAATCTTCCTCGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7500#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60
consensus_7500#1 -----------------------------------------------CCGGTCGAGCCGC 13
* * * * **
consensus_7500#0 CCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCC 120
consensus_7500#1 TCAGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCC 73
* *********************************************************
consensus_7500#0 AGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCA 180
consensus_7500#1 AGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCA 133
************************************************************
consensus_7500#0 ACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGG 240
consensus_7500#1 ACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGG 193
************************************************************
consensus_7500#0 CGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCG 300
consensus_7500#1 CGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCG 253
************************************************************
consensus_7500#0 TGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAA 360
consensus_7500#1 TGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAA 313
************************************************************
consensus_7500#0 CATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGG 420
consensus_7500#1 CATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGG 373
************************************************************
consensus_7500#0 TTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCA 480
consensus_7500#1 TTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCA 433
************************************************************
consensus_7500#0 ACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGA 540
consensus_7500#1 ACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGA 493
************************************************************
consensus_7500#0 GCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTG 600
consensus_7500#1 GCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTG 553
************************************************************
consensus_7500#0 CCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTCCGCCAATGGCTGGGC 660
consensus_7500#1 CCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCA---TCTCG-- 608
******************************************** * *** ** *
consensus_7500#0 CCGAGCTGGACGATGACGACGACGACGAGCTGGACGATGGGGGTGGATCTG-GACGATCC 719
consensus_7500#1 CCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATAC 668
****** ** *** ** * * * ***** * * * * * ** *
consensus_7500#0 CAAGAGCAACCGGGGCATCGACAGTGGCTTCCTCGATCCGGTCGACAATGGGTCCGTTGA 779
consensus_7500#1 CTAACG-AATCGAATCTTCCTCGGCA---------------------------------- 693
* * * ** ** * ** * *
consensus_7500#0 TACGGGTGTGTCGCGGGCGGGACGACGCGGAGGTCGTCGCAATCAGGCACCTCCCGGGCC 839
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 AACGTATCGCCCAGGGTTTGCACCGACATTCGATGCCGATGGGACACGTGTTGTTCAAAC 899
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GACGGCCACCGGGCAGGTCATACCGGACGTGAATGTGTACCAGCAGAAGAAGAACCTTGC 959
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GCAGGGCATGATGGATCTGGCGCTACTGTCCGCCAACGCCAATCAGCTCCGGTACGTGCT 1019
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GGAGTCGTACAGCCGCCATCCGTACTTCTACGTCAATCTGGTGTTCATCTCGACCAGCAT 1079
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 CATTGCGCAGGTGGCGGTCGGCATTGGGCTGATCTGGAAGAGCCGGTACGACATCAAGAA 1139
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GGAGAACGATTTTTGTAAAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTCAT 1199
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 CATTACGCTCGTGAACGTGCTGATATCGGCGTTTGGTGTTGCCGAGACGCAGCCGGTCGT 1259
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GTGACGGCACTGTGCTGTTACTGTGCTGTGTAATTTAAACTATGTTGTCAGTATCATCTA 1319
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GAGTAGCATTTAGGTTAGGATGTGATAGGAGCAAATAGTGGAGTTTCGACGACTTCAAAT 1379
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 CCAAATAACTTAACCATGGTCCATAGATTGTTTTAATCCAAAATAAATGATGTATTTTAT 1439
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GAACCTTTTTAGTGAAGAGCTACTACTGTAAATTGATTATCAGTAGTGTTACTAACGATA 1499
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 AGCATTTTCGTGAACACTACCACAAAAACAAAAAGAAATTAACACTCCTAATATATCATT 1559
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 CATACACTGCGTGTGTTCGTTGACCTTACAGTTCGTGTTTGCACCCACAACAAACCACTG 1619
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 CGGGCGTTTCAGATGTAAAGAGAGAAGAACAATTGATCAAACAGCTGTATAAACAATAAA 1679
consensus_7500#1 ------------------------------------------------------------
consensus_7500#0 GTTAAAAATGATCAAAACATTCCTCAGTA 1708
consensus_7500#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||