These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1209 fasta sequence [TTTTTTTTAAGGGCATACACTCTTGCTCGGCAAAATTACAAAACCAAAGCTTTAATTTTATTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGCGGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGA-CCAGCTCATCCAGCTCCAGATTAACGTACCGCGCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA-TCGCACTGTA-CCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCC-CGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT-GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGACAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCAATCTGCAAAATAACTGCAAACCTCCACCA] [+] EMBL AGA283896 [TTTTTTTTAAGGGCATACACTCTTGCTCGGCAAAATTACAAAACCAAAGCTTTAATTTTATTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGCGGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGAGCCAGCTCATCCAGCTCCAGATTAACGTACCNNCCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGATTCGCACTGTACCCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAAC ] [+] EMBL CNS09KYZ [ TCGGCAAAATTACAAAACCAAAGCTTTAATTTTATTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGCGGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGA CCAGCTCATCCAGCTCCAGATTAACGTACGGCGCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA TCGCACTGTA CCGCTCGTCCGGCGGTAC CATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGC GCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCC CGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGA AAAAACCAGGCTGGTACGTTTGATATTCAACTTTTTTTA ] [-] EMBL BX618286 [ CCAGCTCATCCAGCTCCAGATTAACGTACCGCGCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA TCGCACTGTA CCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCC CGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCC ] [-] EMBL CNS09KYY [ CGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCTTTTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA TCGCACTGTA CCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTTCGTG TCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCGCGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGACAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCAATCTGCAAAATAACTGCAAACCTCCACCA] [-] EMBL AGA285190 [ CAACTTCATCCTCGTTCGCTGGGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGT ] consensusID : consensus_7505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [CGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGNCAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCTAGAGTTGATAGTAAAATTGTCGGAGT] [-] EMBL BX620322 [CGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGNCAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCTAGAGTTGATAGTAAAATTGTCGGAGT] consensusID : consensus_7505#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [GGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGAAACAAGCCGGGCCGATGC] [-] EMBL AL930480 [GGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGAAACAAGCCGGGCCGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7505#0 TTTTTTTTAAGGGCATACACTCTTGCTCGGCAAAATTACAAAACCAAAGCTTTAATTTTA 60 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 TTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGC 120 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 GGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGACC 180 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 AGCTCATCCAGCTCCAGATTAACGTACCGCGCGTAGGTCGTAATGAAGGACAGTACCGGG 240 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 TTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGG 300 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 TACGGCCGGTACAGTACCGGATGGTGCACCATCGTGATCGCACTGTACCGCTCGTCCGGC 360 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 GGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCA 420 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 CCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACG 480 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 TGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCC 540 consensus_7505#1 ------------------------------------------------------------ consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 GGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGAT 600 consensus_7505#1 ----------------------CGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGAT 38 consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 TCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGC 660 consensus_7505#1 TCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGC 98 consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 ACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAG 720 consensus_7505#1 ACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAG 158 consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 GTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAG 780 consensus_7505#1 GTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAG 218 consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 CTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCG 840 consensus_7505#1 CTGT-------------------------------------------------------- 222 consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 CACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATG 900 consensus_7505#1 -------TTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATG 275 consensus_7505#2 ------------------GGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATG 42 ****************************************** consensus_7505#0 CTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTT 960 consensus_7505#1 CTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTT 335 consensus_7505#2 CTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTT 102 ************************************************************ consensus_7505#0 GTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATG 1020 consensus_7505#1 GTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATG 395 consensus_7505#2 GTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATG 162 ************************************************************ consensus_7505#0 CTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTT-CAAGTTATGTTGCGAATGAGA 1079 consensus_7505#1 CTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTT-CAAGTTATGTTGCGAATGAGA 454 consensus_7505#2 CTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGAAACAAGCCGGGCCGATGC----- 217 ************************************ **** * * consensus_7505#0 GAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGACAGGAGCTGAGTACGATTTTGTT 1139 consensus_7505#1 GAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGNCAGGAGCTGAGTACGATTTTGTT 514 consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 TTGGCCAACTACCAACCAAATTACACGCACACAAAGATGC---AATCTGCAAAATAACTG 1196 consensus_7505#1 TTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCTAGAGTTGATAGTAAAATTG 574 consensus_7505#2 ------------------------------------------------------------ consensus_7505#0 CAAACCTCCACCA 1209 consensus_7505#1 TCGGAGT------ 581 consensus_7505#2 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||