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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 909 fasta sequence
[CCGACAGTGTTGTATATTCATGTGTAAAGCATGTAGGCATAAGTGATAATAATTTCCGAGTGACAAGGGTATGTGTGTGAGTGTATAGGTGCGTAGTACATAAGATACATGGTTGGTGGATGAACGCGCGCGCAGCAAGAAAAAGAAAGCACCAATGTTTTGCGGCGAACGCGTTTCTTTGTCTCTCAAACCTGTAGATCTGTGCTGATCTATGAACAGCGCGATAAAAAAGAGGTTCAGTCGTGTGCATGAGTGTGTATTGGCATTGTGTAAGCCAAATTGAACTTGAAGTTTCATGTTTGACGCTTTCGTAGGAAGAAGAGAAAATAACCAGAAAGTCAATCAAACGCTTGTCGATGGACGGCAAATTGTGTCACACTGTATGAGATATGGATAAGAATAAGTGTGACAGAAATCAGTGCACTGGCTAACGCTAGGATTAACGCAACAGTTAATGCAAATT-GGTCGGAGTATAACGCATTGGAAAAAAGCGACAGCGCAGCAAATGTATATTGTATGTAAATAGTAAACACAATTACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGCTGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCTATGTTGCGCAGGCAGCGAGCATAATGTAGACAAGTTTTCCATAGTCTTCGTACGTTTCTCAACCATTTGTAGCAATACTATCGTTTATATCACTATTTCTTTTCGCTCTGTGATGGCAACGGGGGACACGACCTCCGAGATTCATTGTCGCCTCTGCATTATTACACATTCTTTCTAAAACCTGTAAACGTTTAAGCAATGCCAGCGCTATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGA]
[+] EMBL BM601474 [CCGACAGTGTTGTATATTCATGTGTAAAGCATGTAGGCATAAGTGATAATAATTTCCGAGTGACAAGGGTATGTGTGTGAGTGTATAGGTGCGTAGTACATAAGATACATGGTTGGTGGATGAACGCGCGCGCAGCAAGAAAAAGAAAGCACCAATGTTTTGCGGCGAACGCGTTTCTTTGTCTCTCAAACCTGTAGATCTGTGCTGATCTATGAACAGCGCGATAAAAAAGAGGTTCAGTCGTGTGCATGAGTGTGTATTGGCATTGTGTAAGCCAAATTGAACTTGAAGTTTCATGTTTGACGCTTTCGTAGGAAGAAGAGAAAATAACCAGAAAGTCAATCAAACGCTTGTCGATGGACGGCAAATTGTGTCACACTGTATGAGATATGGATAAGAATAAGTGTGACAGAAATCAGTGCACTGGCTAACGCTAGGATTAACGCAACAGTTAATGCAAATT GGTCGGAGTATAACGCATTGGAAAAAAGCGACAGCGCAGCAAATGTATATTGTATGTAAATAGTAAACACAATTACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGCTGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCT ]
[+] EMBL BX614557 [ TGCAAATTCGGTCGGAGTATAACGCATTGGAAAAAAGCGACAGCGCATCAAATGTATATTGTATGTAAATAGTAAACACAATTACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGCTGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCTATGTTGCGCAGGCAGCGAGCATAATGTAGACAAGTTTTCCATAGTCTTCGTACGTTTCTCAACCATTTGTAGCAATACTATCGTTTATATCACTATTTCTTTTCGCTCTGTGATGGCAACGGGGGACACGACCTCCGAGATTCATTGTCGCCTCTGCATTATTACACATTCTTTCTAAAACCTGTAAACGTTTAAGCAATGCCAGCGCTATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGA]
consensusID : consensus_7507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CCGCCCACGCGTCCGACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAGTGCGGAAACACCTACCCGGTACGATGCCAAGCAGCTGTACCAAGTATGTGGCAGGGCAGCTTGGAACAGAAGTTGCCCGCGAT]
[+] EMBL BM600787 [CCGCCCACGCGTCCGACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAGTGCGGAAACACCTACCCGGTACGATGCCAAGCAGCTGTACCAAGTATGTGGCAGGGCAGCTTGGAACAGAAGTTGCCCGCGAT]
consensusID : consensus_7507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 667 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCAGGC-TGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCC-TGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAG]
[+] EMBL BM576857 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAGCTGCCTTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGTGACTCGAGTGAGGAAGAGTCCATACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTGTACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCGGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTGTCCGAC ]
[+] EMBL BM641818 [ CCGCCCACGCGTCCG GGC TGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCC TGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTG ]
[+] EMBL BM603592 [ cgaCCCACGCGTCCGAGATGGC TGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCC TGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAG]
consensusID : consensus_7507#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[CCGCGGACGCGTGGGCGCTCGTACTGTGAAGATGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCG]
[+] EMBL BM584884 [CCGCGGACGCGTGGGCGCTCGTACTGTGAAGATGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7507#2 ----------------------------CCGCCCACGCGTC--CGCCCACGCGTCCGCCC 30
consensus_7507#3 ----------------------------CCGCGGACGCGTGGGCGCTCGTACTGTGAAGA 32
consensus_7507#1 ------------------------------------------------------------
consensus_7507#0 CCGACAGTGTTGTATATTCATGTGTAAAGCATGTAGGCATAAGTGATAATAATTTCCGAG 60
consensus_7507#2 AGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGG 90
consensus_7507#3 TGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGG 92
consensus_7507#1 --------------------------------------------------CCGCCCACG- 9
consensus_7507#0 TGACAAGGGTATGTGTGTGAGTGTATAGGTGCGTAGTACATAAGATAC-ATGGTTGGTGG 119
* *
consensus_7507#2 CCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGC-AGCTCGAAGC-- 147
consensus_7507#3 CCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGC-AGCTCGAAGC-- 149
consensus_7507#1 CGTCCGACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGC-AGCTCGAAGC-- 66
consensus_7507#0 ATGAACGCGCGCGCAGCAAGAAAAAGAAAGCACCAATGTTTTGCGGCGAACGCGTTTCTT 179
* * * ** * ** * * * *** * * ** *
consensus_7507#2 -GTTCCTCGCGCCGACCGAAGGGCGTCAATAT-TGAGATCTACCATCCGAAGGGTGT--G 203
consensus_7507#3 -GTTCCTCGCGCCGACCGAAGGGCGTCAATAT-TGAGATCTACCATCCGAAGGGTGT--G 205
consensus_7507#1 -GTTCCTCGCGCCGACCGAAGGGCGTCAATAT-TGAGATCTACCATCCGAAGGGTGT--G 122
consensus_7507#0 TGTCTCTCAAACCTGTAGATCTGTGCTGATCTATGAACAGCGCGATAAAAAAGAGGTTCA 239
** *** ** ** * * ** * *** * ** ** * **
consensus_7507#2 ATGGTGTG---------GTACCCGTACCGTGCCGGC---ATGGAACTG-----TTCGGCA 246
consensus_7507#3 ATGGTGTG---------GTACCCGTACCGTGCCGGC---ATGGAACTG-----TTCGGCA 248
consensus_7507#1 ATGGTGTG---------GTACCCGTACCGTGCCGGC---ATGGAACTG-----TTCGGCA 165
consensus_7507#0 GTCGTGTGCATGAGTGTGTATTGGCATTGTGTAAGCCAAATTGAACTTGAAGTTTCATGT 299
* ***** *** * * *** ** ** ***** ***
consensus_7507#2 TCGAGATTTTCATC--AACAAGGCAAACCAACCGTC--GTCG-TCGGGCGACT-CGAGTG 300
consensus_7507#3 TCGAGATTTTCATC--AACAAGGCAAACCAACCGTC--GTCG-TCGGGCGACT-CGAGTG 302
consensus_7507#1 TCGAGATTTTCATC--AACAAGGCAAACCAACCGTC--GTCG-TCGGGCGACT-CGAGTG 219
consensus_7507#0 TTGACGCTTTCGTAGGAAGAAGAGAAAATAACCAGAAAGTCAATCAAACGCTTGTCGATG 359
* ** **** * ** *** *** **** *** ** ** * **
consensus_7507#2 AGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACG 360
consensus_7507#3 AGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACG 362
consensus_7507#1 AGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACG 279
consensus_7507#0 GACGGCAAATTGTGTCAC-ACTGTATGAGATATGGATAAGAATAAGTGTGACAGAAATCA 418
* * * *** *** ** ** * * * * * *
consensus_7507#2 GCAAGTTTA-TACTGCGCAGCGAGGACGCCGTGATC--CGCAGCCGGGACCACGTATACT 417
consensus_7507#3 GCAAGTTTA-TACTGCGCAGCGAGGACGCCGTGATC--CGCAGCCGGGACCACGTATACT 419
consensus_7507#1 GCAAGTTTA-TACTGCGCAGCGAGGACGCCGTGATC--CGCAGCCGGGACCACGTATACT 336
consensus_7507#0 GTGCACTGGCTAACGC-TAGGATTAACGCAACAGTTAATGCAAATTGGTCGGAGTATAAC 477
* * ** ** ** **** * *** ** * *****
consensus_7507#2 ACAATGCGATCGTGAAGAAAACCAGCG---GCAAGGCGTACGTGTCCCGATCGAACGATT 474
consensus_7507#3 ACAATGCGATCGTGAAGAAAACCAGCG--------------------------------- 446
consensus_7507#1 ACAATGCGATCGTGAAGAAAACCAGCG---GCAAGGCGTACGTGTCCCGATCGAACGATT 393
consensus_7507#0 GCATTGGAAAAAAGCGACAGCGCAGCAAATGTATATTGTATGTAAATAGTAAACACAATT 537
** ** * * * ****
consensus_7507#2 TCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGAT-ATGACGGAAAAGGCTAGCTCGTGC 533
consensus_7507#3 ------------------------------------------------------------
consensus_7507#1 TCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGAT-ATGACGGAAAAGGCTAGCTCGTGC 452
consensus_7507#0 ACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGC 597
consensus_7507#2 AATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGA--------TAAGCGGCTG---- 581
consensus_7507#3 ------------------------------------------------------------
consensus_7507#1 AATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGA--------TAAGCGGCTG---- 500
consensus_7507#0 TGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCTATGTT 657
consensus_7507#2 GCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCC 641
consensus_7507#3 ------------------------------------------------------------
consensus_7507#1 GCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCC 560
consensus_7507#0 GCGCAGGCAGCGAGCATAATGTAGACAAGTTTTC-CATAGTCTTCGTACGTTTCTCAACC 716
consensus_7507#2 AATCGTACCAAGCAGTTGCTGCTGAG---------------------------------- 667
consensus_7507#3 ------------------------------------------------------------
consensus_7507#1 AATCGTACCAAGCAGTTGCTGCTGAGTGCGGAAACACCTACCCGGTACGATGCCAAGCAG 620
consensus_7507#0 ATTTGTAGCAA-TACTATCGTTTATATCACTATTTCTTTTCGCTCTGTGATGGCAACGGG 775
consensus_7507#2 ------------------------------------------------------------
consensus_7507#3 ------------------------------------------------------------
consensus_7507#1 CTGTACCAAGTATGTGGCAGGGCAGCTTGGAACAGAAGTTGCCCGCGAT----------- 669
consensus_7507#0 GGACACGACCTCCGAGATTCATTGTCGCCTCTGCATTATTACACATTCTTTCTAAAACCT 835
consensus_7507#2 ------------------------------------------------------------
consensus_7507#3 ------------------------------------------------------------
consensus_7507#1 ------------------------------------------------------------
consensus_7507#0 GTAAACGTTTAAGCAATGCCAGCGCTATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAA 895
consensus_7507#2 --------------
consensus_7507#3 --------------
consensus_7507#1 --------------
consensus_7507#0 AGGGTAAGGCTGGA 909
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||