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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 950 fasta sequence
[CCGCTCGGAGTCGGATGCTAAAACGGTGCGCGGATCAGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGA---TGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATCATGCGCCAGATATTCGAGGGCGTCGACTACATCCATTCGAAGAACATTGTGCATCGCGAT]
[+] EMBL BM639734 [CCGCTCGGAGTCGGATGCTAAAACGGTGCGCGGATCAGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCT ]
[+] EMBL BM648308 [ CTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACTAGGTCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACGCAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCATCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACGACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTA ]
[+] EMBL BM648856 [ ccGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGC AAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGA TGCGTT ]
[+] EMBL AL696114 [ cgaggnngTTATCATCGAGCTGCAGGATGTGTTCGAATCGGAAATTGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATCATGCGCCAGATATTCGAGGGCGTCGACTACATCCATTCGAAGAACATTGTGCATCGCGAT]
consensusID : consensus_7514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 869 fasta sequence
[CCGCGGATGCTAAAACGGTGCGCGGATCGGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTCGTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATC]
[+] EMBL BM596411 [CCGCGGATGCTAAAACGGTGCGCGGATCGGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTCGTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCA ]
[+] EMBL BM637215 [ ccgGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTCGTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATC]
consensusID : consensus_7514#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTCAGCTCGGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACCTCGCTAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACATAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGT]
[+] EMBL BM578383 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTCAGCTCGGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACCTCGCTAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACATAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7514#0 CCGCTCGGAGTCGGATGCTAAAACGGTGCGCGGATCAGGAGATACCGGTGCGCACATACA 60
consensus_7514#1 --------CCGCGGATGCTAAAACGGTGCGCGGATCGGGAGATACCGGTGCGCACATACA 52
consensus_7514#2 ------------------------------------------------------------
consensus_7514#0 CACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAG 120
consensus_7514#1 CACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAG 112
consensus_7514#2 ------------------------------------------------------------
consensus_7514#0 GCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGT 180
consensus_7514#1 GCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGT 172
consensus_7514#2 -----------------------------------CCGCG----GACGCGTG-GGCGGAC 20
***** ** ** * *
consensus_7514#0 GCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGT 240
consensus_7514#1 GCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGT 232
consensus_7514#2 GCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGG-GCTCAGCTCG-GTCGGT 78
** *** * * * * ** *** ** *** *** * ** ******
consensus_7514#0 GCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACAC 300
consensus_7514#1 GCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACAC 292
consensus_7514#2 GCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACAC 138
************************************************************
consensus_7514#0 AAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTC 360
consensus_7514#1 AAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTC------ 346
consensus_7514#2 AAGTGCCAGTGGTGACTCCAGCTCAAC------CTCGCTAGCAGCATCAGCGTCATCGTC 192
*************************** *** * ***************
consensus_7514#0 GTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCC 420
consensus_7514#1 ------GTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCC 400
consensus_7514#2 GTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCC 252
********** *******************************************
consensus_7514#0 GGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAA 480
consensus_7514#1 GGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAA 460
consensus_7514#2 GGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAA 312
************************************************************
consensus_7514#0 AATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGA 540
consensus_7514#1 AATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGA 520
consensus_7514#2 AATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGA 372
************************************************************
consensus_7514#0 TGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAG 600
consensus_7514#1 TGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAG 580
consensus_7514#2 TGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAG 432
************************************************************
consensus_7514#0 CTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAAGATCA 660
consensus_7514#1 CTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAA-GATCA 639
consensus_7514#2 CTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAA-GATCA 491
****************************************************** *****
consensus_7514#0 TCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGG 720
consensus_7514#1 TCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGG 699
consensus_7514#2 TCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGG 551
************************************************************
consensus_7514#0 AAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGT 780
consensus_7514#1 AAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGT 759
consensus_7514#2 AAATTCAAATCCTGCGCCAAGTGATGGGACATAAGTTTATCATCGAGCTGCAGGATGTGT 611
******************************* ****************************
consensus_7514#0 TCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCG 840
consensus_7514#1 TCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCG 819
consensus_7514#2 TCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGT--------------------- 650
***************************************
consensus_7514#0 ATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATCATGCGCCAGA 900
consensus_7514#1 ATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATC---------- 869
consensus_7514#2 ------------------------------------------------------------
consensus_7514#0 TATTCGAGGGCGTCGACTACATCCATTCGAAGAACATTGTGCATCGCGAT 950
consensus_7514#1 --------------------------------------------------
consensus_7514#2 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||