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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1246 fasta sequence
[CCGAAAACAACGCGCAACAGAGTTTGGTTTGTGAATTTCTACAATTTACCGAAAGTTTCCGTAATATTCCACCATGGCGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAGTAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT-CGAAACGG-CCGACCG-GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA-CCCCGGACGG-TGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTAGATCAGTCCCTGGGCGAATCGCCACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCCCCTGCCCGGGCGTTACGGACAGTCCGCTGTTTACGTGGGGTGAGATCGAAGGCACTCCGTTCCGGTTGGACGGCGGAGACACACCGCTCCATCCGTCGGCCGGTGGACCGTCGTTCCGTATCATGGAAACGTCGAAGCGCGAAAATTTGGCCCTACAGCTGGCGGAAAAGGCGGCCGAGCAGTCGCGGGAGAAGAAAGCGAAGGCGATCGAAGCGGCACGGCGCAACATTGCGTCACCGCTGGTGCGCAGCTCGTTC]
[+] EMBL BM633213 [CCGAAAACAACGCGCAACAGAGTTTGGTTTGTGAATTTCTACAATTTACCGAAAGTTTCCGTAATATTCCACCATGGCGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAGTAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGTGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCTGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCGAGAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGC ]
[+] EMBL BX620006 [ CGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAGTAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGTGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCTGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCANCGAGGACAATGACAGCTTCCAGGAGATCATCCGAAACGGCCCGACCG GANGCTGCGTCAAAAGTTTG ]
[+] EMBL BX607347 [ CAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGAGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCG GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA CCCCGGACGG TGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTAGATCAGTCCCTGGGCGAATCGCCACAG ]
[+] EMBL BX607869 [ CAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTGTAGCAAGTCCCGCCACATTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCG GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA CCCCGGACGG TGTGGAGCTGACCAAGGAGGAGCAGCTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTGGATCAGTCTCTGGGCGAATCGCCACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCC ]
[+] EMBL BX607229 [ GTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGAGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCG GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACACCCCCGGACGGTTGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGC ]
[+] EMBL BX602309 [ TGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCATCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA CCCCGGACGG TGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTAGATCAGTCCCTGGGCGAATCGCCACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCCCCTGCCCGGGCGTTACGGACAGTCCGCTGTTTACGTGGGGTGAGATCGAAGGCACTCCGTTCCGGTTGGACGGCGGAGACACACCGCTCCATCCGTCGGCCGGTGGACCGTCGTTCCGTATCATGGAAACGTCGAAGCGCGAAAATTTGGCCCTACAGCTGGCGGAAAAGGCGGCCGAGCAGTCGCGGGAGAAGAAAGCGAAGGCGATCGAAGCGGCACGGCGCAACATTGCGTCACCGCTGGTGCGCAGCTCGTTC]
consensusID : consensus_7522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[AGAATCGGCACAGGCGTNTNACAGTCCCGCCACATTCGAGACACCACTACCGGAAGCGAGCACCAGCCAGGCGAAGCGCCACCATCGATCCGGTCGANCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGTCGAGGACAATGACAGCTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAATGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACACCCCGGACGGTGTGTAGCGTGACCAAGGAGGAGCAGCTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCAGCAGACAGCTACGCGCCTCCAGTCGACAATCCGTTCAACGAGCAAGACAGCCGGCATGCGATCGTGGANCGCGGCCAACANCGCAGGCCGAAAGCATCTGCCGGAGANAACATCGGGCGCTGGACTGTCCGGTGGTGGATCAGGTCTCTGGGCGAATCGCCTACAGGTGCGNGGCTTCGGGTTCGAT]
[+] EMBL BX466375 [AGAATCGGCACAGGCGTNTNACAGTCCCGCCACATTCGAGACACCACTACCGGAAGCGAGCACCAGCCAGGCGAAGCGCCACCATCGATCCGGTCGANCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGTCGAGGACAATGACAGCTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAATGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACACCCCGGACGGTGTGTAGCGTGACCAAGGAGGAGCAGCTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCAGCAGACAGCTACGCGCCTCCAGTCGACAATCCGTTCAACGAGCAAGACAGCCGGCATGCGATCGTGGANCGCGGCCAACANCGCAGGCCGAAAGCATCTGCCGGAGANAACATCGGGCGCTGGACTGTCCGGTGGTGGATCAGGTCTCTGGGCGAATCGCCTACAGGTGCGNGGCTTCGGGTTCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7522#0 CCGAAAACAACGCGCAACAGAGTTTGGTTTGTGAATTTCTACAATTTACCGAAAGTTTCC 60
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 GTAATATTCCACCATGGCGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAG 120
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 TAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAAT 180
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 CATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTT 240
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 TCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGA 300
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 TGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCG 360
consensus_7522#1 -------------------------------------------AGAATCGGCACAGGC-G 16
*** * ** * *
consensus_7522#0 TTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGA-CACCAGCCAG-CGAA 418
consensus_7522#1 TNTNAC-AGTCCCGCCACATTCGAGACACCACTACCGGAAGCGAGCACCAGCCAGGCGAA 75
* * * *********** ************************* ********** ****
consensus_7522#0 GCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTC 478
consensus_7522#1 GCGCCACCATCGATCCGGTCGANCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTC 135
********************** *************************************
consensus_7522#0 GGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAG-CGAGGACAATGACAG 537
consensus_7522#1 GGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGTCGAGGACAATGACAG 195
***************************** ************** ***************
consensus_7522#0 CTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAA-GTTTGCCGTGCTGT 596
consensus_7522#1 CTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAATGTTTGCCGTGCTGT 255
********************************************* **************
consensus_7522#0 ACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCG 656
consensus_7522#1 ACCAAGCCGAAGGTACGACCGC-ATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCG 314
********************** *************************************
consensus_7522#0 AGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACA 716
consensus_7522#1 AGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACA 374
************************************************************
consensus_7522#0 AAAACTACATCATGTACACCCCGGACGGTGTGGAGC-TGACCAAGGAGGAGCAGTTGGAA 775
consensus_7522#1 AAAACTACATCATGTACACCCCGGACGGTGTGTAGCGTGACCAAGGAGGAGCAGCTGGAA 434
******************************** *** ***************** *****
consensus_7522#0 ATGGCAAAGCGGAAGCAGGAAATCAACCAC--AACAGC-ACGCGCCTCCATC--ACAATC 830
consensus_7522#1 ATGGCAAAGCGGAAGCAGGAAATCAACCAGCAGACAGCTACGCGCCTCCAGTCGACAATC 494
***************************** ***** *********** ******
consensus_7522#0 CGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAG-GCGGCCAA-AACGCAGGCCAA 888
consensus_7522#1 CGTTCAACGAGCAAGACAGCCGGCATGCGATCGTGGANCGCGGCCAACANCGCAGGCCGA 554
************************* *********** ******** * ******** *
consensus_7522#0 A--CATCTGCCGGAGAAAATC---GGCG-TGGACGGTCGGGTGGTAGATCAG-TCCCTGG 941
consensus_7522#1 AAGCATCTGCCGGAGANAACATCGGGCGCTGGACTGTCCGGTGGTGGATCAGGTCTCTGG 614
* ************* ** **** ***** *** ****** ****** ** ****
consensus_7522#0 GCGAATCGCC-ACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCCCCTGCCCGGGC 1000
consensus_7522#1 GCGAATCGCCTACAGGTGCGNGGCTTCGGGTTCGAT------------------------ 650
********** ********* *************
consensus_7522#0 GTTACGGACAGTCCGCTGTTTACGTGGGGTGAGATCGAAGGCACTCCGTTCCGGTTGGAC 1060
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 GGCGGAGACACACCGCTCCATCCGTCGGCCGGTGGACCGTCGTTCCGTATCATGGAAACG 1120
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 TCGAAGCGCGAAAATTTGGCCCTACAGCTGGCGGAAAAGGCGGCCGAGCAGTCGCGGGAG 1180
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 AAGAAAGCGAAGGCGATCGAAGCGGCACGGCGCAACATTGCGTCACCGCTGGTGCGCAGC 1240
consensus_7522#1 ------------------------------------------------------------
consensus_7522#0 TCGTTC 1246
consensus_7522#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||