These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 785 fasta sequence [TTTATCGCTGACTTCAGAGTGTACAAGGCGCTTCGTAGACGAAACCCCCAGTCGCAACGATGCCGAAACCTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGG-AAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCGCTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGCTTTATCCCGATGGAAAGGTCCGAGTTCCCGCGGGTGCACGGGTGGATCGAGCGGATGAAGCAGTTGCCGTACTATGAGGAGATCAACGGTGCCGGTGCCACAGAGCTGGCCGAGTTCATTGTGGATATGTTGGCGAAGAATGCAAAACTGTAACAGGGTCATGCTATTCGCGGTTGTTAACTAGTCNAATAAAGTGTAGGATTT] [+] EMBL BX627468 [TTTATCGCTGACTTCAGAGTGTACAAGGCGCTTCGTAGACGAAACCCCCAGTCGCAACGATGCCGAAACCTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGGAAAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCGCTGACCTGAGCTGCATTTC ] [+] EMBL BX616021 [ AGGCGCTTCGTAGACGAAACCCCCAGTCGCAACGATGCCGAAACCTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGG ] [+] EMBL AL933312 [ ccgaggtCTTCGTAGACGAAACCCCCAGTCGCAACGATGCCGAAACCTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGG AAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGA ] [+] EMBL AF316635 [ CCTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGG AAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCGCTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGCTTTATCCCGATGGAAAGGTCCGAGTTCCCGCGGGTGCACGGGTGGATCGAGCGGATGAAGCAGTTGCCGTACTATGAGGAGATCAACGGTGCCGGTGCCACAGAGCTGGCCGAGTTCATTGTGGATATGTTGGCGAAGAATGC ] [+] EMBL BX624503 [ ATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGG AAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCGCTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGCTTTATCCCGATGGAAAGGTCCGAGTTCCCGCGGGTGCACGGGTGGATCGAGCGGATGAAGCAGTTGCCGTACTATGAGGAGATCAACGGTGCCGGTGCCACAGAGCTGGCCGAGTTCATTGTGGATATGTTGGCGAAGAATGCAAAACTGTAACAGGGTCATGCTATTCGCGGTTGTTAACTAGTCNAATAAAGTGTAGGATTT] [+] EMBL BX628863 [ CGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGG AAGACTCGCTGCAGAACGATTACGTANCCGGATCACNCATGACGATCGCTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGCTTTATCCCGATGGAANGGTCCNAGTTCCCGCGGGTGCACGGGTGGATCCAGCGGATGAAGCAGTTGCCGTACTATGAGGAGATCAACGGTGCCNGTGCCACAGAGCTGGCCGAGTTCATTGTGGATATGTTGGCGANAAATGCAAAACTGTAACAGGNTCATGCTATTCG ] consensusID : consensus_7526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CAAGAATCGGCACGNAGGCAGTCGCAACGATGCCGAAACTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGGAAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCGCTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGCGTTTATACCCGATTGGAAAAGGTCCGAGTTCCCCGCGGGTGCACAGGGTGGATCGAAGCGGATNAAGCAGTTGCGTACTATGAGGAGATCAACGGTGCCGGTGCCAACAGAGCTGGCCGAAGNTCATGTGGNATATTGTGGG] [+] EMBL BX469882 [CAAGAATCGGCACGNAGGCAGTCGCAACGATGCCGAAACTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGACGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAAATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATAATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCCAGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATGAGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGGTATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGTACCGGTTGCTGGAAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCGCTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGCGTTTATACCCGATTGGAAAAGGTCCGAGTTCCCCGCGGGTGCACAGGGTGGATCGAAGCGGATNAAGCAGTTGCGTACTATGAGGAGATCAACGGTGCCGGTGCCAACAGAGCTGGCCGAAGNTCATGTGGNATATTGTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7526#0 TTTATCGCTGACTTCAGAGTGTACAAGGCGCTTCGTAGACGAAACCCCCAGTCGCAACGA 60 consensus_7526#1 -----------------------CAAGAATCGGCACGNAGG-------CAGTCGCAACGA 30 **** * * * * ************ consensus_7526#0 TGCCGAAACCTGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGA 120 consensus_7526#1 TGCCGAAAC-TGTGCTATACACGGTTCATCTGAGCCCACCGTGCCGTGCCGTGGAGCTGA 89 ********* ************************************************** consensus_7526#0 CGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAA 180 consensus_7526#1 CGGCAAAAGCGCTTGGATTGGAGTTAGAGCGCAAGCTTGTGAACTTACTTGCTGGGGAAA 149 ************************************************************ consensus_7526#0 ATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATA 240 consensus_7526#1 ATTTAACACCTGAGTTCTTGAAGCTCAATCCTAAGCATACGATCCCCGTGCTGGACGATA 209 ************************************************************ consensus_7526#0 ATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCC 300 consensus_7526#1 ATGGGACGATCATCAGCGAAAGCCACGCGATCATGATCTATCTCGTGCGTAAGTACGGCC 269 ************************************************************ consensus_7526#0 AGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATG 360 consensus_7526#1 AGGGCGAAGGGAAGGATGCGCTGTACCCAACGGACATTGTCGAGCAGGCTCGGGTCAATG 329 ************************************************************ consensus_7526#0 AGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGG 420 consensus_7526#1 AGGCACTGCACTTCGAGTCCGGTGTGCTGTTTGCTCGGTTGCGATTCATTACCGAGCTGG 389 ************************************************************ consensus_7526#0 TATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGT 480 consensus_7526#1 TATTTTTCGCACGCAAACCAGAAATTCCGGAAGATCGCATCGAGTACGTTCGTACGGCGT 449 ************************************************************ consensus_7526#0 ACCGGTTGCTGGAAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCG 540 consensus_7526#1 ACCGGTTGCTGGAAGACTCGCTGCAGAGCGATTACGTAGCCGGATCACGCATGACGATCG 509 ************************************************************ consensus_7526#0 CTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGC-TTTAT-CCCGAT--GGAA 596 consensus_7526#1 CTGACCTGAGCTGCATTTCCTCGGTCGCCTCTATGGTGGGCGTTTATACCCGATTGGAAA 569 ***************************************** ***** ****** * ** consensus_7526#0 AGGTCCGAGTTCCC-GCGGGTGCAC-GGGTGGATCGA-GCGGATGAAGCAGTTGCCGTAC 653 consensus_7526#1 AGGTCCGAGTTCCCCGCGGGTGCACAGGGTGGATCGAAGCGGATNAAGCAGTTGC-GTAC 628 ************** ********** *********** ****** ********** **** consensus_7526#0 TATGAGGAGATCAACGGTGCCGGTGCCA-CAGAGCTGGCCGAGTTCATTGTGGATATGTT 712 consensus_7526#1 TATGAGGAGATCAACGGTGCCGGTGCCAACAGAGCTGGCCGAAGNTCATGTGGN-ATATT 687 **************************** ************* ***** ** ** consensus_7526#0 GGCGAAGAATGCAAAACTGTAACAGGGTCATGCTATTCGCGGTTGTTAACTAGTCNAATA 772 consensus_7526#1 GTGGG------------------------------------------------------- 692 * * consensus_7526#0 AAGTGTAGGATTT 785 consensus_7526#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||