cluster # 7527

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Anopheles gambiae
cluster # 7527 cluster # 7527 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7527#0 length = 848 sequences # 1
consensus_7527#1 length = 476 sequences # 4

consensus_7527#2 length = 353 sequences # 1
consensus_7527#3 length = 110 sequences # 1

consensusID : consensus_7527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 848
fasta sequence

                              [GCTCAGCAGATGCCCGNNGGTTAATNAAGTAGCGAAAGCGCAGGCAGCAGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTACCTGCGCAAGACCATTCCGCCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGCAGTGAAGGGTTCCGTGTCGTACATCAACGAACTGGCCAAGAACGGTGCCCAGATCAGGTTNTACNCATCTGCATCTGCACTNTCCTCGNGCCGGGACGGCAGCATAGCANNATCTTGNGAACCGCACGAGGGCTNAACACGCAGAATNGTAGGCTTGGCTTGCCCACCGGCTAACGGCCCTGGNGCATTAAANGCAAGATAGCTNTACTAGTAATNCAAAACAAAATCGGCNANANAATAATTCAGACACTNACCACCTANGCGANCACCCACCAANCTGGAAAAACCGGGCACAANATTGGTCNCANNNGGGCGCACNACCACCANACACACNAACCACNACANCNCCCNACAACAGACANACCANCAAAANNAAACCNCAAACGCAGGCCCACAACTATGGACAACACAGGCCGCAGCCCCCGCGCACACNGACCCCCCACANAACTANTACACCCCNCGCCATCCAAAACGCANGCAAGCGANGATCAACACCACACACACACACACANGCCANATNANGGGGACNAANNACCACTGGGCAGCCCCGGAAC]

[+] EMBL AL694729             [GCTCAGCAGATGCCCGNNGGTTAATNAAGTAGCGAAAGCGCAGGCAGCAGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTACCTGCGCAAGACCATTCCGCCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGCAGTGAAGGGTTCCGTGTCGTACATCAACGAACTGGCCAAGAACGGTGCCCAGATCAGGTTNTACNCATCTGCATCTGCACTNTCCTCGNGCCGGGACGGCAGCATAGCANNATCTTGNGAACCGCACGAGGGCTNAACACGCAGAATNGTAGGCTTGGCTTGCCCACCGGCTAACGGCCCTGGNGCATTAAANGCAAGATAGCTNTACTAGTAATNCAAAACAAAATCGGCNANANAATAATTCAGACACTNACCACCTANGCGANCACCCACCAANCTGGAAAAACCGGGCACAANATTGGTCNCANNNGGGCGCACNACCACCANACACACNAACCACNACANCNCCCNACAACAGACANACCANCAAAANNAAACCNCAAACGCAGGCCCACAACTATGGACAACACAGGCCGCAGCCCCCGCGCACACNGACCCCCCACANAACTANTACACCCCNCGCCATCCAAAACGCANGCAAGCGANGATCAACACCACACACACACACACANGCCANATNANGGGGACNAANNACCACTGGGCAGCCCCGGAAC]




>consensus_7527#0
GCTCAGCAGATGCCCGNNGGTTAATNAAGTAGCGAAAGCGCAGGCAGCAGATGCCTCAGC
AAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGA
GGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGT
GATTACCTGCGCAAGACCATTCCGCCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCT
GCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGCAGTGAA
GGGTTCCGTGTCGTACATCAACGAACTGGCCAAGAACGGTGCCCAGATCAGGTTNTACNC
ATCTGCATCTGCACTNTCCTCGNGCCGGGACGGCAGCATAGCANNATCTTGNGAACCGCA
CGAGGGCTNAACACGCAGAATNGTAGGCTTGGCTTGCCCACCGGCTAACGGCCCTGGNGC
ATTAAANGCAAGATAGCTNTACTAGTAATNCAAAACAAAATCGGCNANANAATAATTCAG
ACACTNACCACCTANGCGANCACCCACCAANCTGGAAAAACCGGGCACAANATTGGTCNC
ANNNGGGCGCACNACCACCANACACACNAACCACNACANCNCCCNACAACAGACANACCA
NCAAAANNAAACCNCAAACGCAGGCCCACAACTATGGACAACACAGGCCGCAGCCCCCGC
GCACACNGACCCCCCACANAACTANTACACCCCNCGCCATCCAAAACGCANGCAAGCGAN
GATCAACACCACACACACACACACANGCCANATNANGGGGACNAANNACCACTGGGCAGC
CCCGGAAC

consensusID : consensus_7527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 476
fasta sequence

                              [CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTG---TT-TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGGAAATGTTATGG]

[+] EMBL BM584345             [CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACGATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCTCGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTG   TTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG           ]
[+] EMBL BM590876             [CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGATGGCAAGAACGGTGCCCAGTCTGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACACTGAGATTAGAGTGTTTG      TTTTGCAAATATCGAATAAAAAGACAACAGGGAACG            ]
[+] EMBL BM578394             [   ccgGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGATGGCAAGAACGGTGCCCAGTCTGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACACTGAGATTAGAGTGTTTG      TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGGAAATGTTATGG]
[+] EMBL BM589947             [          ccgGTAGCGAAAGCGCAGGCAGCAGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTGTTTTT TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGG           ]




>consensus_7527#1
CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTT
TGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGT
TGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGAC
CATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCT
CGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAA
CGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTGCATCTGCACTTCCTCGGCGGACG
GCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAG
TGTTTGTTTTTTGCAAATATCGAATAAAAAGACAACAGGGAACGGAAATGTTATGG

consensusID : consensus_7527#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCTCGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTGTTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG]

[+] EMBL BM598080             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCTCGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTGTTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG]




>consensus_7527#2
CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACCGGTACACTTCCTCGTGATCCCGC
GCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATT
TGATGCTCGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCG
TCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCG
GCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAG
ATAAGAGTGTTTGTTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG

consensusID : consensus_7527#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 110
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGAAAATGTCGGATGAAGTAGCGAAAGACGCGCAGGCAGCAGATGGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCA]

[+] EMBL BM592666             [CCGCGGACGCGTGGGCGGACGCGTGGGAAAATGTCGGATGAAGTAGCGAAAGACGCGCAGGCAGCAGATGGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCA]




>consensus_7527#3
CCGCGGACGCGTGGGCGGACGCGTGGGAAAATGTCGGATGAAGTAGCGAAAGACGCGCAG
GCAGCAGATGGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7527#0      ------------------------------------------------------------
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTT 60
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      ------------------------------------------------------------
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      TGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGT 120
consensus_7527#2      ----------------------------------------------------CCGCG-GA 7
                                                                                  

consensus_7527#0      -------------GC-TCAGCAGATGCCCGNNGG------TTAATNAAGTAGCGAAAG-- 38
consensus_7527#3      -----CCGCGGACGCGTGGGCGGACGCGTGGGAAAATGT-CGGATGAAGTAGCGAAAGAC 54
consensus_7527#1      TGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGAC 180
consensus_7527#2      CGCGTGGGCGGACGCGTGGGCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGAC 67
                                   *      *  * **                 * *    *** ***  

consensus_7527#0      -----CGCAGGCAGCAGA--TG-CCTCAGCAAACGATACCATTTTTGG------GAAGAT 84
consensus_7527#3      G----CGCAGGCAGCAGA--TGGCCTCAGCAAACGATACCATTTTTGG------GAAGAT 102
consensus_7527#1      CATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCT 240
consensus_7527#2      CATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCT 127
                           *****  * *  *   * *   **   ****  *  *  * **      ** * *

consensus_7527#0      TCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAA 144
consensus_7527#3      TCTACGCA---------------------------------------------------- 110
consensus_7527#1      CGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAA 300
consensus_7527#2      CGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAA 187
                        *  ***                                                    

consensus_7527#0      CGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTACCTGCGCAAGACCATTCCG 204
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      CGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTGCATCTGCACTTCCTCGGCGGACG 360
consensus_7527#2      CGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACG 247
                                                                                  

consensus_7527#0      CCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGG 264
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      GCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCT-GCACGTACGCTGAGATAAGA 419
consensus_7527#2      GCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCT-GCACGTACGCTGAGATAAGA 306
                                                                                  

consensus_7527#0      CAAGAAGGTGGCCGCCGAGCAAGGCATGGCAGTGAAGGGTTCCGTGTCGTACATCAACGA 324
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      GTGTTTGTT-TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGGAAATGTTATGG-- 476
consensus_7527#2      GTGTTTGTTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG------------- 353
                                                                                  

consensus_7527#0      ACTGGCCAAGAACGGTGCCCAGATCAGGTTNTACNCATCTGCATCTGCACTNTCCTCGNG 384
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      CCGGGACGGCAGCATAGCANNATCTTGNGAACCGCACGAGGGCTNAACACGCAGAATNGT 444
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      AGGCTTGGCTTGCCCACCGGCTAACGGCCCTGGNGCATTAAANGCAAGATAGCTNTACTA 504
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      GTAATNCAAAACAAAATCGGCNANANAATAATTCAGACACTNACCACCTANGCGANCACC 564
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      CACCAANCTGGAAAAACCGGGCACAANATTGGTCNCANNNGGGCGCACNACCACCANACA 624
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      CACNAACCACNACANCNCCCNACAACAGACANACCANCAAAANNAAACCNCAAACGCAGG 684
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      CCCACAACTATGGACAACACAGGCCGCAGCCCCCGCGCACACNGACCCCCCACANAACTA 744
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      NTACACCCCNCGCCATCCAAAACGCANGCAAGCGANGATCAACACCACACACACACACAC 804
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      ANGCCANATNANGGGGACNAANNACCACTGGGCAGCCCCGGAAC 848
consensus_7527#3      --------------------------------------------
consensus_7527#1      --------------------------------------------
consensus_7527#2      --------------------------------------------