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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1302 fasta sequence
[AAGGTGAAACGATGCTATCGCCACTCGTAAGGTGTGGTCCTCAGGGAACGGAGTTTCTTAAACCGGTCACGCTCAACATACCACACGGTGCCGGCCGCACCGCTTCGCTGGGCCTTTCCCTTAAAGCCACCGACAGCGAGAAGAACCTGCAAACCGACGGGGAGGAAATCGACCTGCCCAGCAATACGGCGGCCCACACCGTCTCGGTCAAGGGGGACCACTTTTAACAACAGCAAACGAGTGTTGTGGAATCGTTCTACCCCCGCAGTCAGCTTAGCATTTTGTTCGGCGAAATAGCGTTTGCTGTCCTTCCTGCCAAT------TGATCATGATGATGACGATGATTACCATCAATGTTACAAGCCGTACTGAACAGTAGTGCCTTTTCCCCTGCAGCCGTGTGCATCCGCAATTAAGTTTGATCCAGGGGTCAGTCTAAGGCCGCTGCCACATCTCTCAAGAAGGAGCTTGATGGAGCGGAGTAGGAATAGTAAAATCTAAACTGTGTGTATTGCTTACCAACGCATCTTTGCCATTTTATCGTAGAATAGACACATTTTTTTAGGTGTAAGGCAGGGACGTTTTCTGACACACTTTTTAACACACTCTGTACATAAAAGCAAAGGCGGCGCATCGGATGTCGAACAAATGCATCGTTTTGATGAAGTGTACTTTTGCATCCACCGTGGAGGAAGCAGTAGACGTTTTATATTATCTTACAAAAAACAAACAAACAAACAAAAGATAAGGCGTAGGCCACAGTTTTTCGTGATAGTTTTACCATGTAAATAGCTAAAATCTCGAACCGGATCGAGTTTATCGATCATATGGTGTACCATGCTTTTTCGCTTTTCTTGACACGTGAATCAACACTGCTCCTCAAGATCCGGATTAGTGAATAGAGCTAGCTTCTCCACTGTACAGCCATACCTAGATGAGCGAAAGAACCGCGGGTAATCCCGACAGCCGACAGAGTTGACCGGTGACATATTATACAGGAAAGCGATAGTTAATCAAGACGGCTACGTACGGGAACCACATCATTGTCTATTCATTTCCGCTGCCATTATGAGAGACACAATGTGTTTGTTTACACAGTACGCTTTGGCGCCATGTACCATGTGTGAAAGTGGTACAAACCGAGAAAGCCGGAAAGTAGAGACACAGAGCGAAGTGCGTAGCATTTTATAATATAACGAAACAAGATCGGAAAGTATTTTCTTATTAACCCTATTTCTGGAGAAAAAAAAACAAACAAAGTGAAAACAAGTTTATAAATTTTAGGTACGACGGTGTATGTTTTGT]
[+] EMBL BX610025 [AAGGTGAAACGATGCTATCGCCACTCGTAAGGTGTGGTCCTCAGGGAACGGAGTTTCTTAAACCGGTCACGCTCAACATACCACACGGTGCCGGCCGCACCGCTTCGCTGGGCCTTTCCCTTAAAGCCACCGACAGCGAGAAGAACCTGCAAACCGACGGGGAGGAAATCGACCTGCCCAGCAATACGGCGGCCCACACCGTCTCGGTCAAGGGGGACCACTTTTAACAACAGCAAACGAGTGTTGTGGAATCGTTCTACCCCCGCAGTCAGCTTAGCATTTTGTTCGGCGAAATAGCGTTTGCTGTCCTTCCTGCCAAT TGATCATGATGATGACGATGATTACCATCAATGTTACAAGCCGTACTGAACAGTAGTGCCTTTTTCCCTGCAGCCGTGTGCATTCGCAATTAAGTTTGATCCAGGGGTCAGTCTAGGGCCGCTCTCACATCCCTCAAGAAGGAGCTTGATGGAGCGGAGTAGGAATAGTAAAATCT ]
[+] EMBL BM577346 [ ccGGTGGACCACTTTTAACAACAGCAAACGAGTGTTGTGGAATCGTTCTACCCCCGCAGTCAGCTTAGCATTTTGTTCGGCGAAATAGCGTGTGCTGTCCTTCCTGCCAATTGATCATGATCATGATGATGATGATGATTACCATCAATGTTACAAGCCGTACTGAACAGTAGTGCCTTTTCCCCTGCAGCCGTGTGCATCCGCAATTAGGTTTGATCCAGGGGTCAGTCTAAGGCCGCTGCCACATCTCTCAAGAAGGAGCTTGATGGAGCGGAGTAGGAATAGTAAAATCTAAACTGTGTGTATTGCTTACCAACGCATCTTTGCCATTTTATCGTAGAATAGACACATTTTTTTAGGTGTAAGGCAGGGACGTTTTCTGACACACTTTTTGACACACTCTGTACATAAAAGCAAAGGCGGCGCATCGGACGTCGAACAAATGCATCGTTTTCATGAAGTGTAGTTTTGCATCCACCGTGGAGGAAGCAGTAGACGTTTTATATTATCTTACAAAAAACAAACAAACAAACAAAAGATAAGGCGTAGGCCACAGTTTTTCGTGATAGTTTTACCATGTAAATAGCTAAAATCTCGAACCGGATCGAGTTCATCGATCATATGGTGTACCATGCTTTTTCGCTTTTCTTGACACGTGAATCAACACTGCTCCTCAAGATCCGGATTAGTGAATAG ]
[+] EMBL BM590394 [ ccgAACGAGTGTTGTGGAATCGTTCTACCCCCGCAGTCAGCTTAGCATTTTGTTCGGCGAAATAGCGTTTGCTGTCCTTCCTGCCAAT TGATCATGATGATGACGATGATTACCATCAATGTTACAAGCCGTACTGAACAGTAGTGCCTTTTCCCCTGCAGCCGTGTGCATCCGCAATTAAGTTTGATACAGGGGTCAGTCTAAGGCCGCTGCCACATCTCTCAAGAAGGAGCTTGATGGAGCGGAGTAGGAATAGTAAAATCTAAACTGTGTGTATTGCTTACCAACGCATCTTTGCCATTTTATCGTAGAATAGACACATTTTTTTAGGTGTAAGGCAGGGACGTTTTCTGACACACTTTTTAACACACTCTGTACATAAAAGCAAAGGCGGCGCATCGGATGTCGAACAAATGCATCGTTTTGATGAAGTGTACTTTTGCATCCACCGTGGAGGAAGCAGTAGACGTTTTATATTATCTTACAAAAAACAAACAAACAAACAAAAGATAAGGCGTAGGCCACAGTTTTTCGTGATAGTTTTACCATGTAAATAGCTAAAATCTCGAACCGGATCGAGTTTATCGATCATATGGTGTACCATGCTTTTTCGCTTTTCTTGACACGTGAATCAACACTGCTCTTCAAGATCCGGATTAGTGAATAGAGCTAGCTTCTCCACTGTAC ]
[+] EMBL BM623718 [ ccgATTGCTTACCAACGCATCTTTGCCATTTTATCGTAGAATAGACACATTTTTTTAGGTGTAAGGCAGGGACGTTTTCTGACACACTTTTTAACACACTCTGTACATAAAAGCAAAGGCGGCGCATCGGATGTCGAACAAATGCATCGTTTTGATGAAGTGTACTTTTGCATCCACCGTGGAGGAAGCAGTAGACGTTTTATATTATCTTACAAAAAACAAACAAACAAACAAAAGATAAGGCGTAGGCCACAGTTTTTCGTGATAGTTTTACCATGTAAATAGCTAAAATCTCGAACCGGATCGAGTTTATCGATCATATGGTGTACCATGCTTTTTCGCTTTTCTTGACACGTGAATCAACACTGCTCTTCAAGATCCGGATTAGTGAATAGAGCTAGCTTCTCCACTGTACAGCCATACCTAGATGAGCGAAAGAACCGCGGGTAATCCCGACAGCCGACAGAGTTAACCGGTGACATATTATACAGGAAAGCGATAGTTAATCAAGACGGCTACGTACGGGAACCACATCATTGTCTATTCATTTCCGCTGCCATTATGAGAGACACA ]
[+] EMBL BX609324 [ GCAGGGACGTTTTCTGACACACTTTTTAACACACTCTGTACATAAAAGCAAAGGCGGCGCATCGGATGTCGAACAAATGCATCGTTTTGATGAAGTGTACTTTTGCATCCACCGTGGAGGAAGCAGTAGACGTTTTATATTATCTTACAAAAAACAAACAAACAAACAAAAGATAAGGCGTAGGCCACATTTTTTCGTGATAGTTTTACCATGTAAATAGCTAAAATCTCGAACCGGATCGAGTTTATCGATCATATGGTGTACCATGCTTTTTCGCTTTTCTTGACACGTGAATCAACGCTGCTCCTCAAGATCCGGATTAGTGAATAGA TAGCTTCCCCACTGTACAGTCATACCTAGATGAGCGAAAGAACCGCGGGTAATCCCGACATCCGACAGAGTTGACCGGTGACATATTATACAGGAAAGCGATAGTTAATCAAGACGGCTACGTACGGGAACCACATCATTGTCTATTCATTTCCGCTGCCATTATGAGAGACACAATGTGTTTGTTTACACAGTACGCTTTGGCGCCATGTACCATGTGTGAAAGTGGTACAAACCGAGAAAGCCGGAAAGTAGAGACACAGAGCGAAGTGCGTAGCATTTTATAATATAACGAAACAAGATCGGAAAGTATTTTCTTATTAACCCT ]
[+] EMBL BM648038 [ ccgGCCATACCTAGATGAGCGAAAGAACCGCGGGTAATCCCGACAGCCGACAGAGTTGACCGGTGACATATTATACAGGAAAGCGATAGTTAATCAAGACGGCTACGTACGGGAACCACATCATTGTCTATTCATTTCCGCTGCCATTATGAGAGACACAATG TGTTTACACAGGACGCTTTGGCGCCATGTACCATGTGTGAAAGTGGTACAAACCGAGAAAGCCGGAAAGTAGAGACACAGAGCGAAGTGCGTAGCATTTTATAATATAACGAAACAAGATCGGAAAGTATTTTCTTATTAGCCCTATTTCTGGAGAAAAAAAAACAAACAAAGTGAAAACAAGTTTATAAATTTTAGGTACGACGGTGTATGTTTTGT]
consensusID : consensus_7537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1148 fasta sequence
[CAGAATCCCGCGGTTATAGTCAGCTTANCATNTTGTCCGGGAANAAGCGTTTGCTGTACTTCCTGGCCAATTGATCATGATGATGACGATGATTACCATACAATGTTACAAGCCGTACTGAACAGTAGTGCCTTTTTCCCTGCAGCCGTGTGCATTCGCAATTAAGTTTGATACCAGGGGTCAGTCTAGGGCCGCTCTACACATCCCTCAAGAAGGAGCTTGATGGAAGACGGAGTAGAATAGTAAAATCTAAACTGTGTGTATTTGTTANCAAATGCATCTTTTGCCATTTATATCGTAAGAATAGACACATTTATNTAGGTGTAAGGGCNGGGGAACAGTTATACCCTNGAACAACACCTATTTTATAAACAACAAACCTACTGTAACACTAAACAGCCAAAACNGGCCGGGAGCATTCGGGAATGGTCGCACACCCANAAATGCCTTCGTTATCTAGGACTTGCANNAGCGTTGTCACCTTTCTGGACACTTACCCAACCCGGTGGGCACGGGANAAGCCAGGCACAGAACCGNTNTTCTTGCACTACTTCAATTACTTATTAACCAACACAACAAACAAANACCACACACCCCACACCACACACAGGAATTTAAACGGGGCGGCTTCAAAGGCCCCACACAGGCGAATNANACACCCGGTNGGCACTACGACTCTCTCAACCCCCNTGGTTAGAACTNAGGCTAAAGAAAAATCNTTCGGAAACCTGGGCCTCCGCAGNTCTTCATCGGATCCNACTAATGGTNGGTTACCCAANTGGCCTACTATGTACGGNCTCTACACTCACNTCAGGCAACCACACCGGATTGCAAATCACAAAAAGANCTGGCATCCCTTCCAACAGAATNACNCNGGACTTAGTNGGCCACTTTCACTCANCGCTCTTCACCCCCCNACTGGANNACCAGGCTCGCCNTCACNCCNTAAGAATGAANAGCAGGGAACAACAGANACCCGCCGCGNCTTAACACTACCCGCCACCAATTTCCCGAAACCACGAAGTCTGGACCCCCGGCCTGACACNNTNANTCAATCACCAGGGAACAAGCGCAAAGANAGNACAAATCCCAAGNACGGCGCTAACGCNAACGGGAAAAACACAAAAACCNATAGGCCTNACACNCNT]
[+] EMBL AL692445 [CAGAATCCCGCGGTTATAGTCAGCTTANCATNTTGTCCGGGAANAAGCGTTTGCTGTACTTCCTGGCCAATTGATCATGATGATGACGATGATTACCATACAATGTTACAAGCCGTACTGAACAGTAGTGCCTTTTTCCCTGCAGCCGTGTGCATTCGCAATTAAGTTTGATACCAGGGGTCAGTCTAGGGCCGCTCTACACATCCCTCAAGAAGGAGCTTGATGGAAGACGGAGTAGAATAGTAAAATCTAAACTGTGTGTATTTGTTANCAAATGCATCTTTTGCCATTTATATCGTAAGAATAGACACATTTATNTAGGTGTAAGGGCNGGGGAACAGTTATACCCTNGAACAACACCTATTTTATAAACAACAAACCTACTGTAACACTAAACAGCCAAAACNGGCCGGGAGCATTCGGGAATGGTCGCACACCCANAAATGCCTTCGTTATCTAGGACTTGCANNAGCGTTGTCACCTTTCTGGACACTTACCCAACCCGGTGGGCACGGGANAAGCCAGGCACAGAACCGNTNTTCTTGCACTACTTCAATTACTTATTAACCAACACAACAAACAAANACCACACACCCCACACCACACACAGGAATTTAAACGGGGCGGCTTCAAAGGCCCCACACAGGCGAATNANACACCCGGTNGGCACTACGACTCTCTCAACCCCCNTGGTTAGAACTNAGGCTAAAGAAAAATCNTTCGGAAACCTGGGCCTCCGCAGNTCTTCATCGGATCCNACTAATGGTNGGTTACCCAANTGGCCTACTATGTACGGNCTCTACACTCACNTCAGGCAACCACACCGGATTGCAAATCACAAAAAGANCTGGCATCCCTTCCAACAGAATNACNCNGGACTTAGTNGGCCACTTTCACTCANCGCTCTTCACCCCCCNACTGGANNACCAGGCTCGCCNTCACNCCNTAAGAATGAANAGCAGGGAACAACAGANACCCGCCGCGNCTTAACACTACCCGCCACCAATTTCCCGAAACCACGAAGTCTGGACCCCCGGCCTGACACNNTNANTCAATCACCAGGGAACAAGCGCAAAGANAGNACAAATCCCAAGNACGGCGCTAACGCNAACGGGAAAAACACAAAAACCNATAGGCCTNACACNCNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7537#0 AAGGTGAAACGATGCTATCGCCACTCGTAAGGTGTGGTCCTCAGGGAACGGAGTTTCTTA 60
consensus_7537#1 ------------------------------------------------------------
consensus_7537#0 AACCGGTCACGCTCAACATACCACACGGTGCCGGCCGCACCGCTTCGCTGGGCCTTTCCC 120
consensus_7537#1 ------------------------------------------------------------
consensus_7537#0 TTAAAGCCACCGACAGCGAGAAGAACCTGCAAACCGACGGGGAGGAAATCGACCTGCCCA 180
consensus_7537#1 ------------------------------------------------------------
consensus_7537#0 GCAATACGGCGGCCCACACCGTCTCGGTCAAGGGGGACCACTTTTAACAACAGCAAACGA 240
consensus_7537#1 ------------------------------------------------------------
consensus_7537#0 GTGTTGTGGAATCGTTCTACCCCCGCAGTCAGCTTAGCATTTTGTTCGGCGAAATAGCGT 300
consensus_7537#1 ------CAGAATC---CCGCGGTTATAGTCAGCTTANCATNTTGTCCGG-GAANAAGCGT 50
***** * * ********** *** **** *** *** *****
consensus_7537#0 TTGCTGTCCTTCCTG-CCAATTGATCATGATGATGACGATGATTACCAT-CAATGTTACA 358
consensus_7537#1 TTGCTGTACTTCCTGGCCAATTGATCATGATGATGACGATGATTACCATACAATGTTACA 110
******* ******* ********************************* **********
consensus_7537#0 AGCCGTACTGAACAGTAGTGCCTTTTCCCCTGCAGCCGTGTGCATCCGCAATTAAGTTTG 418
consensus_7537#1 AGCCGTACTGAACAGTAGTGCCTTTTTCCCTGCAGCCGTGTGCATTCGCAATTAAGTTTG 170
************************** ****************** **************
consensus_7537#0 AT-CCAGGGGTCAGTCTAAGGCCGCTGC-CACATCTCTCAAGAAGGAGCTTGATGGAG-- 474
consensus_7537#1 ATACCAGGGGTCAGTCTAGGGCCGCTCTACACATCCCTCAAGAAGGAGCTTGATGGAAGA 230
** *************** ******* ****** *********************
consensus_7537#0 CGGAGTAGGAATAGTAAAATCTAAACTGTGTGTATTGCTTACCAA-CGCATCTTT-GCCA 532
consensus_7537#1 CGGAGTAG-AATAGTAAAATCTAAACTGTGTGTATTTGTTANCAAATGCATCTTTTGCCA 289
******** *************************** *** *** ******** ****
consensus_7537#0 TTT-TATCGTA-GAATAGACACATTTTTTTAGGTGTAAGGCAGGGACGTTTTCTGACACA 590
consensus_7537#1 TTTATATCGTAAGAATAGACACATTTATNTAGGTGTAAGGGCNGGGGAA---CAGTTATA 346
*** ******* ************** * *********** ** * * * *
consensus_7537#0 CTTTTTAACA-CACTCTGTACATAAA-AGCAAAGGCGGCG---CATCGGATGTCGAACAA 645
consensus_7537#1 CCCTNGAACAACACCTATTTTATAAACAACAAACCTACTGTAACACTAAACAGCCAAAAC 406
* * **** *** * ***** * **** * ** * * ** *
consensus_7537#0 ATGC----ATCGTTTTGATGAAGT-GTACTTTTGCA------TCCACCGTGGAGGAA--G 692
consensus_7537#1 NGGCCGGGAGCATTCGGGAATGGTCGCACACCCANAAATGCCTTCGTTATCTAGGACTTG 466
** * * ** * ** * ** * * * * **** *
consensus_7537#0 CAGTAGACGTTTTATATTATCTTACAAAAAACAAAC-----AAACAAACAAAAGATAAGG 747
consensus_7537#1 CANNAGCGTTGTCACCTTTCTGGACACTTACCCAACCCGGTGGGCACGGGANAAGCCAGG 526
** ** * * * ** *** * * *** ** * * ***
consensus_7537#0 CGTAGGCCACAGTTTTTCGTGATAGTTTTACCATGTAAATAGCTAAAATCTCGAACCGGA 807
consensus_7537#1 CACAGAACCGNTNTTCTTGCACTACTTCAATTAC-TTATTAACCAACACAACAAACAAAN 585
* ** * ** * * ** ** * * * * ** * ** * * ***
consensus_7537#0 TCGAGTTTATCGAT----CATATGG-----TGTACCATGCTTTTTCGCTTTTCTTG-ACA 857
consensus_7537#1 ACCACACACCCCACACCACACACAGGAATTTAAACGGGGCGGCTTCAAAGGCCCCACACA 645
* * * * ** * * * ** ** *** * ***
consensus_7537#0 CGTGAATCAACACTGCTCCTCAAGATCCGGATTAGTGAAT----AGAGCTAGCTTCTCCA 913
consensus_7537#1 GGCGAATNANACACCCGGTNGGCACTACGACTCTCTCAACCCCCNTGGTTAGAACTNAGG 705
* **** * * * ** * * ** * ***
consensus_7537#0 CTGTACAGCCATACCTAGATGAGCGAAAGAACCGCGGGTAATC-------CCGACAGCCG 966
consensus_7537#1 CTAAAGAAAAATCNTTCGGAAACCTGGGCCTCCGCAGNTCTTCATCGGATCCNACTAATG 765
** * * ** * * * * **** * * ** ** ** *
consensus_7537#0 ACAGAGTTGACCGGTGACATATTATACAGGAAAGCGATAGTTAATCAAGACGGCTACGTA 1026
consensus_7537#1 GTNGGTTACCCAANTGGCCTACTATGTACGGNCTCTACACTCACNTCAGGCAACCACACC 825
* * * ** * ** *** * * * * * * * ** * * **
consensus_7537#0 CGG----GAACCACATCATTGTCTAT--TCATTTCCGCTGCCATTATGAGAGACACAATG 1080
consensus_7537#1 GGATTGCAAATCACAAAAAGANCTGGCATCCCTTCCAACAGAATNACNCNGGACTTAGTN 885
* ** **** * ** ** **** ** * *** * *
consensus_7537#0 TGTTTGTTT-ACACAGTACGCTTTGGCGCCATGTACCATGTGTGAAAGTGGTACAAACCG 1139
consensus_7537#1 GGCCACTTTCACTCANCGCTCTTCACCCCCCNACTGGANNACCAGGCTCGCCNTCACNCC 945
* *** ** ** * *** * ** * * * *
consensus_7537#0 AGAAAGCCGGAAAGTAGAGAC--ACAGAG---CGAAGTGCGT-AGCATTTTATAATAT-A 1192
consensus_7537#1 NTAAGAATGAANAGCAGGGAACAACAGANACCCGCCGCGNCTTAACACTACCCGCCACCA 1005
** * * ** ** ** ***** ** * * * * ** * * *
consensus_7537#0 ACGAAACAAGATCGGAAAGTATTTTCTTATTAACCCTATTTCTGGAGAAAAAAAAACAAA 1252
consensus_7537#1 ATTTCCCGAAACCACGAAGTCTGGACCCCCGGCCTGACACNNTNANTCAATCACCAGGGA 1065
* * * * * **** * * * * ** * * *
consensus_7537#0 CAAAGTGAAAACAAGTTTATAAATTTTAGGTACGACGGTGTATGTTTTGT---------- 1302
consensus_7537#1 ACAAGCGCAAA-GANAGNACAAATCCCAAGNACGGCGCTAACGCNAACGGGAAAAACACA 1124
*** * *** * * **** * * *** ** * *
consensus_7537#0 ------------------------
consensus_7537#1 AAAACCNATAGGCCTNACACNCNT 1148
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||